Protein–RNA interactions for Protein: Q9HAW0

BRF2, Transcription factor IIIB 50 kDa subunit, humanhuman

Predictions only

Length 419 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRF2Q9HAW0 GSC2-201ENST00000086933 1033 ntAPPRIS P1 TSL 5 BASIC25.22■■□□□ 1.63
BRF2Q9HAW0 BCL7C-201ENST00000215115 1740 ntAPPRIS P1 TSL 1 (best) BASIC25.22■■□□□ 1.63
BRF2Q9HAW0 AC139426.1-201ENST00000568218 2529 ntBASIC25.21■■□□□ 1.63
BRF2Q9HAW0 YAP1-204ENST00000526343 2393 ntTSL 5 BASIC25.21■■□□□ 1.63
BRF2Q9HAW0 ARTN-204ENST00000438616 889 ntTSL 1 (best) BASIC25.21■■□□□ 1.63
BRF2Q9HAW0 RRAGC-201ENST00000373001 2732 ntAPPRIS P1 TSL 1 (best) BASIC25.2■■□□□ 1.62
BRF2Q9HAW0 RTN4R-201ENST00000043402 2157 ntAPPRIS P2 TSL 1 (best) BASIC25.2■■□□□ 1.62
BRF2Q9HAW0 FGF18-201ENST00000274625 1986 ntAPPRIS P1 TSL 1 (best) BASIC25.19■■□□□ 1.62
BRF2Q9HAW0 TPGS1-201ENST00000359315 1114 ntAPPRIS P1 TSL 1 (best) BASIC25.19■■□□□ 1.62
BRF2Q9HAW0 MARCH2-202ENST00000381035 1192 ntTSL 5 BASIC25.19■■□□□ 1.62
BRF2Q9HAW0 SECTM1-201ENST00000269389 2235 ntAPPRIS P2 TSL 1 (best) BASIC25.18■■□□□ 1.62
BRF2Q9HAW0 PSMG4-205ENST00000419065 629 ntTSL 2 BASIC25.18■■□□□ 1.62
BRF2Q9HAW0 MKNK2-202ENST00000309340 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC25.17■■□□□ 1.62
BRF2Q9HAW0 SIGMAR1-203ENST00000378892 1743 ntTSL 2 BASIC25.17■■□□□ 1.62
BRF2Q9HAW0 ECI1-207ENST00000570258 1512 ntAPPRIS ALT2 TSL 5 BASIC25.17■■□□□ 1.62
BRF2Q9HAW0 PLEKHG6-206ENST00000536531 1683 ntTSL 1 (best) BASIC25.17■■□□□ 1.62
BRF2Q9HAW0 EXOC3L4-201ENST00000380069 2293 ntAPPRIS P1 TSL 1 (best) BASIC25.17■■□□□ 1.62
BRF2Q9HAW0 ST6GALNAC6-203ENST00000373142 2448 ntTSL 1 (best) BASIC25.17■■□□□ 1.62
BRF2Q9HAW0 AC092755.2-201ENST00000560199 402 ntTSL 3 BASIC25.16■■□□□ 1.62
BRF2Q9HAW0 STUB1-205ENST00000565677 1560 ntTSL 1 (best) BASIC25.16■■□□□ 1.62
BRF2Q9HAW0 FSD1L-208ENST00000495708 1906 ntTSL 1 (best) BASIC25.16■■□□□ 1.62
BRF2Q9HAW0 MZT2B-202ENST00000409255 769 ntAPPRIS ALT2 TSL 5 BASIC25.15■■□□□ 1.62
BRF2Q9HAW0 ZNF787-203ENST00000610935 1925 ntAPPRIS P1 TSL 1 (best) BASIC25.15■■□□□ 1.62
BRF2Q9HAW0 EFNA1-202ENST00000368407 1926 ntAPPRIS P1 TSL 1 (best) BASIC25.14■■□□□ 1.62
BRF2Q9HAW0 FEV-201ENST00000295727 1879 ntAPPRIS P1 TSL 1 (best) BASIC25.14■■□□□ 1.61
BRF2Q9HAW0 MYLIP-202ENST00000356840 1666 ntAPPRIS P1 TSL 1 (best) BASIC25.13■■□□□ 1.61
BRF2Q9HAW0 HOXB3-212ENST00000498678 2196 ntAPPRIS P1 TSL 2 BASIC25.13■■□□□ 1.61
BRF2Q9HAW0 SEC61G-204ENST00000450622 512 ntAPPRIS P1 TSL 2 BASIC25.13■■□□□ 1.61
BRF2Q9HAW0 SLC30A10-202ENST00000366926 1915 ntAPPRIS P1 TSL 1 (best) BASIC25.12■■□□□ 1.61
BRF2Q9HAW0 HNRNPAB-205ENST00000506259 1674 ntAPPRIS ALT2 TSL 1 (best) BASIC25.11■■□□□ 1.61
BRF2Q9HAW0 CIB1-201ENST00000328649 1247 ntAPPRIS P1 TSL 1 (best) BASIC25.11■■□□□ 1.61
BRF2Q9HAW0 AC012615.2-201ENST00000586259 447 ntTSL 4 BASIC25.11■■□□□ 1.61
BRF2Q9HAW0 CIB1-202ENST00000612800 1096 ntTSL 1 (best) BASIC25.11■■□□□ 1.61
BRF2Q9HAW0 ATF4-201ENST00000337304 2019 ntAPPRIS P1 TSL 1 (best) BASIC25.1■■□□□ 1.61
BRF2Q9HAW0 CERS2-205ENST00000368954 2505 ntAPPRIS P1 TSL 1 (best) BASIC25.1■■□□□ 1.61
BRF2Q9HAW0 BATF3-201ENST00000243440 980 ntAPPRIS P1 TSL 1 (best) BASIC25.1■■□□□ 1.61
BRF2Q9HAW0 ABL1-201ENST00000318560 5766 ntTSL 1 (best) BASIC25.09■■□□□ 1.61
BRF2Q9HAW0 ABHD17A-202ENST00000292577 1757 ntAPPRIS P1 TSL 1 (best) BASIC25.09■■□□□ 1.61
BRF2Q9HAW0 NMB-202ENST00000394588 1017 ntTSL 1 (best) BASIC25.09■■□□□ 1.61
BRF2Q9HAW0 AL139393.2-201ENST00000608721 2025 ntBASIC25.08■■□□□ 1.61
BRF2Q9HAW0 RUNX2-205ENST00000465038 1770 ntAPPRIS P4 TSL 5 BASIC25.08■■□□□ 1.61
BRF2Q9HAW0 AL133346.1-201ENST00000435287 495 ntTSL 2 BASIC25.08■■□□□ 1.61
BRF2Q9HAW0 SHF-206ENST00000560471 2499 ntTSL 5 BASIC25.07■■□□□ 1.6
BRF2Q9HAW0 ARHGAP22-202ENST00000374170 2107 ntTSL 5 BASIC25.06■■□□□ 1.6
BRF2Q9HAW0 MISP3-201ENST00000269720 1424 ntAPPRIS ALT2 TSL 5 BASIC25.04■■□□□ 1.6
BRF2Q9HAW0 NOXA1-201ENST00000341349 1678 ntAPPRIS P1 TSL 1 (best) BASIC25.04■■□□□ 1.6
BRF2Q9HAW0 MIR762-201ENST00000390236 83 ntBASIC25.04■■□□□ 1.6
BRF2Q9HAW0 SUZ12P1-203ENST00000578195 985 ntBASIC25.04■■□□□ 1.6
BRF2Q9HAW0 AC012629.2-201ENST00000606513 377 ntTSL 5 BASIC25.04■■□□□ 1.6
BRF2Q9HAW0 COL13A1-214ENST00000522165 2061 ntAPPRIS ALT2 TSL 5 BASIC25.04■■□□□ 1.6
BRF2Q9HAW0 LANCL3-203ENST00000614025 1469 ntTSL 2 BASIC25.03■■□□□ 1.6
BRF2Q9HAW0 MTCH1-202ENST00000373627 2057 ntAPPRIS P1 TSL 1 (best) BASIC25.03■■□□□ 1.6
BRF2Q9HAW0 LMO1-202ENST00000428101 1038 ntAPPRIS ALT1 TSL 1 (best) BASIC25.03■■□□□ 1.6
BRF2Q9HAW0 CHML-205ENST00000638160 705 ntTSL 3 BASIC25.03■■□□□ 1.6
BRF2Q9HAW0 SPATA5L1-208ENST00000638607 1863 ntTSL 2 BASIC25.02■■□□□ 1.6
BRF2Q9HAW0 VEGFA-231ENST00000640499 1188 ntAPPRIS P3 TSL 1 (best) BASIC25.02■■□□□ 1.6
BRF2Q9HAW0 AMZ2-201ENST00000359783 1722 ntTSL 5 BASIC25.02■■□□□ 1.6
BRF2Q9HAW0 ATP6V1E2-204ENST00000522587 1559 ntAPPRIS P1 TSL 3 BASIC25.01■■□□□ 1.59
BRF2Q9HAW0 MNX1-207ENST00000543409 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC25.01■■□□□ 1.59
BRF2Q9HAW0 GRK6-206ENST00000507633 1660 ntTSL 5 BASIC25.01■■□□□ 1.59
BRF2Q9HAW0 PDCD2-215ENST00000614056 1287 ntTSL 2 BASIC25.01■■□□□ 1.59
BRF2Q9HAW0 ENKD1-201ENST00000243878 1579 ntAPPRIS P1 TSL 1 (best) BASIC25.01■■□□□ 1.59
BRF2Q9HAW0 MARCH11-201ENST00000332432 1741 ntAPPRIS P1 TSL 5 BASIC25■■□□□ 1.59
BRF2Q9HAW0 HNRNPAB-204ENST00000504898 1785 ntAPPRIS P4 TSL 1 (best) BASIC25■■□□□ 1.59
BRF2Q9HAW0 HDGF-210ENST00000537739 2073 ntAPPRIS P1 TSL 1 (best) BASIC25■■□□□ 1.59
BRF2Q9HAW0 HOPX-206ENST00000503639 1248 ntAPPRIS P1 TSL 1 (best) BASIC25■■□□□ 1.59
BRF2Q9HAW0 PDPK1-203ENST00000389224 2416 ntTSL 2 BASIC25■■□□□ 1.59
BRF2Q9HAW0 CHPT1-201ENST00000229266 1585 ntAPPRIS P2 TSL 1 (best) BASIC24.99■■□□□ 1.59
BRF2Q9HAW0 TESK1-201ENST00000336395 2421 ntAPPRIS P1 TSL 1 (best) BASIC24.99■■□□□ 1.59
BRF2Q9HAW0 SCX-201ENST00000567180 999 ntAPPRIS P1 TSL 1 (best) BASIC24.99■■□□□ 1.59
BRF2Q9HAW0 FZD2-201ENST00000315323 2112 ntAPPRIS P1 BASIC24.98■■□□□ 1.59
BRF2Q9HAW0 DPF1-202ENST00000412732 2303 ntTSL 1 (best) BASIC24.98■■□□□ 1.59
BRF2Q9HAW0 IL17D-201ENST00000304920 1861 ntAPPRIS P1 TSL 1 (best) BASIC24.98■■□□□ 1.59
BRF2Q9HAW0 SHARPIN-202ENST00000398712 1765 ntAPPRIS P1 TSL 1 (best) BASIC24.97■■□□□ 1.59
BRF2Q9HAW0 GFRA4-202ENST00000319242 900 ntAPPRIS P4 TSL 1 (best) BASIC24.96■■□□□ 1.59
BRF2Q9HAW0 HNRNPLP2-201ENST00000568980 1570 ntBASIC24.96■■□□□ 1.59
BRF2Q9HAW0 H2AFV-205ENST00000381124 628 ntTSL 3 BASIC24.95■■□□□ 1.58
BRF2Q9HAW0 AP000547.3-202ENST00000592107 1019 ntTSL 1 (best) BASIC24.95■■□□□ 1.58
BRF2Q9HAW0 ADAP1-201ENST00000265846 2363 ntAPPRIS P1 TSL 1 (best) BASIC24.93■■□□□ 1.58
BRF2Q9HAW0 ITGA9-203ENST00000422441 2282 ntTSL 1 (best) BASIC24.92■■□□□ 1.58
BRF2Q9HAW0 RPS2-209ENST00000529806 993 ntTSL 3 BASIC24.92■■□□□ 1.58
BRF2Q9HAW0 TNFSF12-201ENST00000293825 1553 ntAPPRIS P1 TSL 1 (best) BASIC24.92■■□□□ 1.58
BRF2Q9HAW0 TOMM40-201ENST00000252487 1707 ntAPPRIS P2 TSL 1 (best) BASIC24.92■■□□□ 1.58
BRF2Q9HAW0 TOMM40-202ENST00000405636 1709 ntAPPRIS P2 TSL 1 (best) BASIC24.92■■□□□ 1.58
BRF2Q9HAW0 AGAP1-202ENST00000336665 5427 ntAPPRIS P3 TSL 1 (best) BASIC24.91■■□□□ 1.58
BRF2Q9HAW0 EBAG9-202ENST00000395785 1467 ntAPPRIS P1 TSL 1 (best) BASIC24.91■■□□□ 1.58
BRF2Q9HAW0 AC005559.1-201ENST00000589661 871 ntBASIC24.91■■□□□ 1.58
BRF2Q9HAW0 LYNX1-208ENST00000615007 1293 ntAPPRIS P1 TSL 1 (best) BASIC24.91■■□□□ 1.58
BRF2Q9HAW0 PQLC1-203ENST00000397778 2555 ntAPPRIS P3 TSL 1 (best) BASIC24.91■■□□□ 1.58
BRF2Q9HAW0 ZFAND2B-208ENST00000409594 2021 ntTSL 2 BASIC24.9■■□□□ 1.58
BRF2Q9HAW0 AP004833.2-201ENST00000532228 1454 ntBASIC24.89■■□□□ 1.58
BRF2Q9HAW0 THAP11-201ENST00000303596 2114 ntAPPRIS P1 BASIC24.89■■□□□ 1.58
BRF2Q9HAW0 TSEN34-203ENST00000396388 1349 ntAPPRIS P1 TSL 1 (best) BASIC24.88■■□□□ 1.57
BRF2Q9HAW0 PLSCR3-209ENST00000574401 2032 ntAPPRIS P1 TSL 1 (best) BASIC24.88■■□□□ 1.57
BRF2Q9HAW0 MISP3-202ENST00000587086 1535 ntAPPRIS P2 TSL 1 (best) BASIC24.88■■□□□ 1.57
BRF2Q9HAW0 ECI1-203ENST00000562238 948 ntTSL 1 (best) BASIC24.88■■□□□ 1.57
BRF2Q9HAW0 TMEM9-201ENST00000367330 1959 ntAPPRIS P3 TSL 1 (best) BASIC24.87■■□□□ 1.57
BRF2Q9HAW0 RCC1L-205ENST00000618035 1409 ntTSL 1 (best) BASIC24.87■■□□□ 1.57
BRF2Q9HAW0 AC127502.1-201ENST00000399971 1502 ntBASIC24.87■■□□□ 1.57
BRF2Q9HAW0 TNFRSF25-204ENST00000356876 1625 ntAPPRIS ALT2 TSL 1 (best) BASIC24.87■■□□□ 1.57
Retrieved 100 of 98,524 protein–RNA pairs in 57.9 ms