Protein–RNA interactions for Protein: Q96NR3

PTCHD1, Patched domain-containing protein 1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD1Q96NR3 BOD1-206ENST00000480951 814 ntTSL 2 BASIC24.79■■□□□ 1.56
PTCHD1Q96NR3 AC108673.1-201ENST00000510422 1159 ntBASIC24.79■■□□□ 1.56
PTCHD1Q96NR3 VAX2-201ENST00000234392 1147 ntAPPRIS P1 TSL 1 (best) BASIC24.78■■□□□ 1.56
PTCHD1Q96NR3 COPRS-202ENST00000378634 1041 ntTSL 2 BASIC24.78■■□□□ 1.56
PTCHD1Q96NR3 ATRNL1-207ENST00000527407 1583 ntTSL 5 BASIC24.77■■□□□ 1.56
PTCHD1Q96NR3 BATF3-201ENST00000243440 980 ntAPPRIS P1 TSL 1 (best) BASIC24.77■■□□□ 1.56
PTCHD1Q96NR3 UBE2S-203ENST00000589978 496 ntTSL 5 BASIC24.77■■□□□ 1.56
PTCHD1Q96NR3 PLPPR3-204ENST00000520876 2328 ntAPPRIS ALT2 TSL 1 (best) BASIC24.77■■□□□ 1.56
PTCHD1Q96NR3 CHPT1-201ENST00000229266 1585 ntAPPRIS P2 TSL 1 (best) BASIC24.76■■□□□ 1.55
PTCHD1Q96NR3 GXYLT1-201ENST00000280876 1937 ntAPPRIS ALT2 TSL 1 (best) BASIC24.76■■□□□ 1.55
PTCHD1Q96NR3 RCE1-201ENST00000309657 1485 ntAPPRIS P1 TSL 1 (best) BASIC24.76■■□□□ 1.55
PTCHD1Q96NR3 GAL3ST1-204ENST00000402369 1712 ntAPPRIS P1 TSL 3 BASIC24.75■■□□□ 1.55
PTCHD1Q96NR3 ANGPTL6-201ENST00000253109 1900 ntAPPRIS P1 TSL 1 (best) BASIC24.75■■□□□ 1.55
PTCHD1Q96NR3 VEGFA-207ENST00000413642 1197 ntAPPRIS ALT2 TSL 1 (best) BASIC24.74■■□□□ 1.55
PTCHD1Q96NR3 MIR6090-201ENST00000622481 60 ntBASIC24.74■■□□□ 1.55
PTCHD1Q96NR3 PPP3CC-204ENST00000518852 1598 ntTSL 2 BASIC24.74■■□□□ 1.55
PTCHD1Q96NR3 LRRC10B-201ENST00000378075 2219 ntAPPRIS P1 BASIC24.73■■□□□ 1.55
PTCHD1Q96NR3 AC010864.1-201ENST00000609407 1511 ntBASIC24.73■■□□□ 1.55
PTCHD1Q96NR3 AL135925.1-201ENST00000605920 1701 ntBASIC24.72■■□□□ 1.55
PTCHD1Q96NR3 MISP3-202ENST00000587086 1535 ntAPPRIS P2 TSL 1 (best) BASIC24.72■■□□□ 1.55
PTCHD1Q96NR3 ZFAND2B-206ENST00000409336 944 ntAPPRIS P1 TSL 5 BASIC24.72■■□□□ 1.55
PTCHD1Q96NR3 ZFAND2B-221ENST00000621130 1070 ntTSL 5 BASIC24.72■■□□□ 1.55
PTCHD1Q96NR3 CARS2-201ENST00000257347 1879 ntAPPRIS P1 TSL 1 (best) BASIC24.72■■□□□ 1.55
PTCHD1Q96NR3 ECI1-207ENST00000570258 1512 ntAPPRIS ALT2 TSL 5 BASIC24.71■■□□□ 1.55
PTCHD1Q96NR3 FTCD-204ENST00000397748 1955 ntTSL 1 (best) BASIC24.71■■□□□ 1.55
PTCHD1Q96NR3 CIB2-204ENST00000557846 934 ntTSL 3 BASIC24.71■■□□□ 1.55
PTCHD1Q96NR3 PELI3-203ENST00000524466 1671 ntTSL 1 (best) BASIC24.71■■□□□ 1.55
PTCHD1Q96NR3 KLC2-205ENST00000394078 1557 ntTSL 5 BASIC24.71■■□□□ 1.55
PTCHD1Q96NR3 SH3GL3-202ENST00000427482 1806 ntAPPRIS P1 TSL 1 (best) BASIC24.7■■□□□ 1.55
PTCHD1Q96NR3 HDAC11-206ENST00000405025 576 ntTSL 4 BASIC24.7■■□□□ 1.54
PTCHD1Q96NR3 PI4KAP2-202ENST00000450651 2294 ntTSL 5 BASIC24.69■■□□□ 1.54
PTCHD1Q96NR3 TMEM158-201ENST00000503771 1813 ntAPPRIS P1 BASIC24.69■■□□□ 1.54
PTCHD1Q96NR3 GLTP-201ENST00000318348 2356 ntAPPRIS P1 TSL 1 (best) BASIC24.67■■□□□ 1.54
PTCHD1Q96NR3 POLR1D-201ENST00000302979 1166 ntAPPRIS P2 TSL 1 (best) BASIC24.67■■□□□ 1.54
PTCHD1Q96NR3 UBE2A-207ENST00000628549 934 ntTSL 2 BASIC24.66■■□□□ 1.54
PTCHD1Q96NR3 STUB1-205ENST00000565677 1560 ntTSL 1 (best) BASIC24.66■■□□□ 1.54
PTCHD1Q96NR3 DTNBP1-202ENST00000344537 1403 ntAPPRIS P1 TSL 1 (best) BASIC24.65■■□□□ 1.54
PTCHD1Q96NR3 DOCK5-202ENST00000410074 786 ntTSL 2 BASIC24.65■■□□□ 1.54
PTCHD1Q96NR3 TPM2-203ENST00000378292 2147 ntAPPRIS ALT1 TSL 1 (best) BASIC24.64■■□□□ 1.54
PTCHD1Q96NR3 ABCB10P1-201ENST00000614297 2181 ntBASIC24.64■■□□□ 1.53
PTCHD1Q96NR3 HAUS7-201ENST00000370210 1593 ntAPPRIS ALT2 TSL 2 BASIC24.63■■□□□ 1.53
PTCHD1Q96NR3 MLEC-202ENST00000412616 841 ntTSL 3 BASIC24.63■■□□□ 1.53
PTCHD1Q96NR3 LDB1-202ENST00000425280 2089 ntTSL 5 BASIC24.62■■□□□ 1.53
PTCHD1Q96NR3 HSPB11-201ENST00000194214 915 ntAPPRIS P1 TSL 1 (best) BASIC24.62■■□□□ 1.53
PTCHD1Q96NR3 DUX4L29-201ENST00000425409 679 ntBASIC24.62■■□□□ 1.53
PTCHD1Q96NR3 AP002884.3-203ENST00000419895 1711 ntTSL 2 BASIC24.61■■□□□ 1.53
PTCHD1Q96NR3 NME2-202ENST00000393190 866 ntAPPRIS P1 TSL 1 (best) BASIC24.61■■□□□ 1.53
PTCHD1Q96NR3 PABPC1L2B-AS1-201ENST00000416989 1167 ntTSL 3 BASIC24.61■■□□□ 1.53
PTCHD1Q96NR3 AL662864.1-201ENST00000454388 1167 ntTSL 3 BASIC24.61■■□□□ 1.53
PTCHD1Q96NR3 ZNF706-207ENST00000519882 959 ntAPPRIS P1 TSL 3 BASIC24.61■■□□□ 1.53
PTCHD1Q96NR3 ZNF706-213ENST00000521272 732 ntAPPRIS P1 TSL 5 BASIC24.61■■□□□ 1.53
PTCHD1Q96NR3 ABHD17A-202ENST00000292577 1757 ntAPPRIS P1 TSL 1 (best) BASIC24.61■■□□□ 1.53
PTCHD1Q96NR3 MAF-201ENST00000326043 2646 ntAPPRIS P3 TSL 1 (best) BASIC24.61■■□□□ 1.53
PTCHD1Q96NR3 AC004540.2-201ENST00000451368 611 ntTSL 2 BASIC24.6■■□□□ 1.53
PTCHD1Q96NR3 MPST-206ENST00000429360 1331 ntTSL 1 (best) BASIC24.6■■□□□ 1.53
PTCHD1Q96NR3 HNRNPAB-204ENST00000504898 1785 ntAPPRIS P4 TSL 1 (best) BASIC24.59■■□□□ 1.53
PTCHD1Q96NR3 TRAM2-AS1-201ENST00000453216 664 ntTSL 3 BASIC24.59■■□□□ 1.53
PTCHD1Q96NR3 ABHD17AP4-201ENST00000411545 909 ntBASIC24.58■■□□□ 1.53
PTCHD1Q96NR3 AC021231.2-201ENST00000594613 730 ntBASIC24.57■■□□□ 1.52
PTCHD1Q96NR3 COL13A1-210ENST00000517713 2007 ntAPPRIS ALT2 TSL 5 BASIC24.57■■□□□ 1.52
PTCHD1Q96NR3 ATPAF1-202ENST00000371937 1827 ntAPPRIS P1 TSL 1 (best) BASIC24.56■■□□□ 1.52
PTCHD1Q96NR3 SLC35D2-202ENST00000375257 889 ntTSL 2 BASIC24.56■■□□□ 1.52
PTCHD1Q96NR3 HGH1-207ENST00000628266 258 ntTSL 5 BASIC24.56■■□□□ 1.52
PTCHD1Q96NR3 RASSF8-202ENST00000381352 2320 ntTSL 1 (best) BASIC24.55■■□□□ 1.52
PTCHD1Q96NR3 ST7-AS1-201ENST00000456775 1889 ntBASIC24.55■■□□□ 1.52
PTCHD1Q96NR3 GAL3ST1-205ENST00000406361 1819 ntAPPRIS P1 TSL 2 BASIC24.54■■□□□ 1.52
PTCHD1Q96NR3 TM6SF1-202ENST00000322019 2074 ntAPPRIS P1 TSL 1 (best) BASIC24.54■■□□□ 1.52
PTCHD1Q96NR3 CCDC149-203ENST00000502801 1079 ntTSL 1 (best) BASIC24.54■■□□□ 1.52
PTCHD1Q96NR3 ARL8A-201ENST00000272217 1793 ntAPPRIS P1 TSL 1 (best) BASIC24.54■■□□□ 1.52
PTCHD1Q96NR3 PCSK6-201ENST00000331826 2309 ntTSL 5 BASIC24.53■■□□□ 1.52
PTCHD1Q96NR3 ZNF513-201ENST00000323703 2139 ntAPPRIS P1 TSL 1 (best) BASIC24.53■■□□□ 1.52
PTCHD1Q96NR3 FSD1L-208ENST00000495708 1906 ntTSL 1 (best) BASIC24.53■■□□□ 1.52
PTCHD1Q96NR3 FOXA2-202ENST00000419308 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC24.52■■□□□ 1.52
PTCHD1Q96NR3 SLC52A2-201ENST00000329994 1896 ntAPPRIS P1 TSL 1 (best) BASIC24.52■■□□□ 1.52
PTCHD1Q96NR3 DNLZ-201ENST00000371738 724 ntAPPRIS P1 TSL 1 (best) BASIC24.52■■□□□ 1.52
PTCHD1Q96NR3 HNRNPAB-202ENST00000358344 1796 ntAPPRIS P4 TSL 1 (best) BASIC24.52■■□□□ 1.52
PTCHD1Q96NR3 EI24-212ENST00000615917 1407 ntTSL 2 BASIC24.52■■□□□ 1.52
PTCHD1Q96NR3 LSM14B-204ENST00000370915 1079 ntTSL 1 (best) BASIC24.51■■□□□ 1.51
PTCHD1Q96NR3 AGAP3-216ENST00000479901 1881 ntTSL 5 BASIC24.51■■□□□ 1.51
PTCHD1Q96NR3 HINT2-201ENST00000259667 628 ntAPPRIS P1 TSL 1 (best) BASIC24.5■■□□□ 1.51
PTCHD1Q96NR3 REPIN1-204ENST00000466559 1022 ntTSL 1 (best) BASIC24.5■■□□□ 1.51
PTCHD1Q96NR3 EBAG9-202ENST00000395785 1467 ntAPPRIS P1 TSL 1 (best) BASIC24.5■■□□□ 1.51
PTCHD1Q96NR3 ENKD1-201ENST00000243878 1579 ntAPPRIS P1 TSL 1 (best) BASIC24.5■■□□□ 1.51
PTCHD1Q96NR3 GSC-201ENST00000238558 1264 ntAPPRIS P1 TSL 1 (best) BASIC24.49■■□□□ 1.51
PTCHD1Q96NR3 PRSS41-201ENST00000399677 1127 ntAPPRIS P1 TSL 5 BASIC24.49■■□□□ 1.51
PTCHD1Q96NR3 TSPAN33-201ENST00000486685 1863 ntAPPRIS P1 TSL 1 (best) BASIC24.49■■□□□ 1.51
PTCHD1Q96NR3 BCL3-201ENST00000164227 2038 ntAPPRIS P1 TSL 1 (best) BASIC24.49■■□□□ 1.51
PTCHD1Q96NR3 TOMM40-201ENST00000252487 1707 ntAPPRIS P2 TSL 1 (best) BASIC24.48■■□□□ 1.51
PTCHD1Q96NR3 LZTS2-201ENST00000370220 5741 ntAPPRIS P1 TSL 1 (best) BASIC24.48■■□□□ 1.51
PTCHD1Q96NR3 RP9P-201ENST00000381639 1303 ntTSL 1 (best) BASIC24.48■■□□□ 1.51
PTCHD1Q96NR3 TOMM40-202ENST00000405636 1709 ntAPPRIS P2 TSL 1 (best) BASIC24.48■■□□□ 1.51
PTCHD1Q96NR3 ZNRF2P2-203ENST00000454624 420 ntBASIC24.48■■□□□ 1.51
PTCHD1Q96NR3 HNRNPAB-205ENST00000506259 1674 ntAPPRIS ALT2 TSL 1 (best) BASIC24.48■■□□□ 1.51
PTCHD1Q96NR3 UBALD1-202ENST00000587615 799 ntTSL 2 BASIC24.48■■□□□ 1.51
PTCHD1Q96NR3 VEGFA-226ENST00000611736 1239 ntTSL 1 (best) BASIC24.48■■□□□ 1.51
PTCHD1Q96NR3 C14orf80-202ENST00000334656 1358 ntAPPRIS ALT2 TSL 2 BASIC24.47■■□□□ 1.51
PTCHD1Q96NR3 ARHGDIG-201ENST00000219409 949 ntAPPRIS P1 TSL 1 (best) BASIC24.47■■□□□ 1.51
PTCHD1Q96NR3 U2AF1L5-201ENST00000610664 897 ntAPPRIS P5 TSL 1 (best) BASIC24.47■■□□□ 1.51
PTCHD1Q96NR3 AL451007.3-201ENST00000640271 588 ntAPPRIS P1 BASIC24.47■■□□□ 1.51
PTCHD1Q96NR3 QDPR-201ENST00000281243 1648 ntAPPRIS P1 TSL 1 (best) BASIC24.46■■□□□ 1.51
Retrieved 100 of 98,524 protein–RNA pairs in 31.9 ms