Protein–RNA interactions for Protein: Q8WZA2

RAPGEF4, Rap guanine nucleotide exchange factor 4, humanhuman

Predictions only

Length 1,011 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RAPGEF4Q8WZA2 CCM2-201ENST00000258781 1894 ntAPPRIS P3 TSL 1 (best) BASIC35.16■■■■□ 3.22
RAPGEF4Q8WZA2 SLC35D2-203ENST00000375259 1361 ntTSL 1 (best) BASIC35.15■■■■□ 3.22
RAPGEF4Q8WZA2 ARL8A-204ENST00000614750 1727 ntTSL 3 BASIC35.15■■■■□ 3.22
RAPGEF4Q8WZA2 FKBP1A-210ENST00000614856 562 ntTSL 2 BASIC35.13■■■■□ 3.21
RAPGEF4Q8WZA2 ING2-201ENST00000302327 1189 ntAPPRIS P1 TSL 1 (best) BASIC35.12■■■■□ 3.21
RAPGEF4Q8WZA2 CLDND1-226ENST00000513287 999 ntAPPRIS P1 TSL 2 BASIC35.12■■■■□ 3.21
RAPGEF4Q8WZA2 HSD17B1P1-201ENST00000590052 955 ntBASIC35.12■■■■□ 3.21
RAPGEF4Q8WZA2 MTCP1-202ENST00000369476 2274 ntAPPRIS P1 TSL 3 BASIC35.12■■■■□ 3.21
RAPGEF4Q8WZA2 EBPL-201ENST00000242827 914 ntAPPRIS P1 TSL 1 (best) BASIC35.11■■■■□ 3.21
RAPGEF4Q8WZA2 NIT1-201ENST00000368007 1749 ntTSL 2 BASIC35.11■■■■□ 3.21
RAPGEF4Q8WZA2 EI24-212ENST00000615917 1407 ntTSL 2 BASIC35.1■■■■□ 3.21
RAPGEF4Q8WZA2 BATF3-201ENST00000243440 980 ntAPPRIS P1 TSL 1 (best) BASIC35.1■■■■□ 3.21
RAPGEF4Q8WZA2 MYLIP-202ENST00000356840 1666 ntAPPRIS P1 TSL 1 (best) BASIC35.09■■■■□ 3.21
RAPGEF4Q8WZA2 FTCD-202ENST00000397743 1834 ntTSL 1 (best) BASIC35.09■■■■□ 3.21
RAPGEF4Q8WZA2 H2AFV-204ENST00000350771 687 ntTSL 2 BASIC35.08■■■■□ 3.21
RAPGEF4Q8WZA2 RANBP1-202ENST00000402752 1132 ntAPPRIS ALT1 TSL 1 (best) BASIC35.08■■■■□ 3.21
RAPGEF4Q8WZA2 PLEKHG6-206ENST00000536531 1683 ntTSL 1 (best) BASIC35.08■■■■□ 3.21
RAPGEF4Q8WZA2 NOG-201ENST00000332822 1892 ntAPPRIS P1 BASIC35.07■■■■□ 3.21
RAPGEF4Q8WZA2 DUX4L13-201ENST00000554103 1267 ntBASIC35.07■■■■□ 3.2
RAPGEF4Q8WZA2 DUX4L15-201ENST00000611059 1267 ntBASIC35.07■■■■□ 3.2
RAPGEF4Q8WZA2 DUX4L23-201ENST00000615195 1269 ntBASIC35.07■■■■□ 3.2
RAPGEF4Q8WZA2 DUX4L24-201ENST00000617576 1269 ntBASIC35.07■■■■□ 3.2
RAPGEF4Q8WZA2 DUX4L22-201ENST00000618238 1269 ntBASIC35.07■■■■□ 3.2
RAPGEF4Q8WZA2 DUX4L20-201ENST00000619712 1269 ntBASIC35.07■■■■□ 3.2
RAPGEF4Q8WZA2 DUX4L21-201ENST00000622058 1269 ntBASIC35.07■■■■□ 3.2
RAPGEF4Q8WZA2 DUX4L10-201ENST00000622460 1267 ntBASIC35.07■■■■□ 3.2
RAPGEF4Q8WZA2 DUX4L25-201ENST00000624915 1269 ntBASIC35.07■■■■□ 3.2
RAPGEF4Q8WZA2 OLFM2-201ENST00000264833 2019 ntAPPRIS P1 TSL 1 (best) BASIC35.06■■■■□ 3.2
RAPGEF4Q8WZA2 NPTXR-202ENST00000640136 1503 ntAPPRIS P2 TSL 1 (best) BASIC35.06■■■■□ 3.2
RAPGEF4Q8WZA2 RRAD-202ENST00000420652 1476 ntAPPRIS P1 TSL 1 (best) BASIC35.04■■■■□ 3.2
RAPGEF4Q8WZA2 SIAH1-203ENST00000394725 2147 ntAPPRIS P3 TSL 1 (best) BASIC35.03■■■■□ 3.2
RAPGEF4Q8WZA2 VEGFA-208ENST00000417285 1081 ntAPPRIS ALT2 TSL 1 (best) BASIC35.02■■■■□ 3.2
RAPGEF4Q8WZA2 CNIH2-203ENST00000528852 1524 ntAPPRIS ALT1 TSL 1 (best) BASIC35.01■■■■□ 3.2
RAPGEF4Q8WZA2 MSRB2-201ENST00000376510 1803 ntAPPRIS P1 TSL 1 (best) BASIC35.01■■■■□ 3.19
RAPGEF4Q8WZA2 ABHD12-201ENST00000339157 2117 ntAPPRIS P1 TSL 2 BASIC35■■■■□ 3.19
RAPGEF4Q8WZA2 RHOC-202ENST00000339083 1418 ntAPPRIS P1 TSL 1 (best) BASIC35■■■■□ 3.19
RAPGEF4Q8WZA2 C11orf95-204ENST00000546282 390 ntTSL 3 BASIC35■■■■□ 3.19
RAPGEF4Q8WZA2 AP002884.3-203ENST00000419895 1711 ntTSL 2 BASIC35■■■■□ 3.19
RAPGEF4Q8WZA2 CAAP1-205ENST00000520187 773 ntTSL 5 BASIC34.99■■■■□ 3.19
RAPGEF4Q8WZA2 METRNL-202ENST00000570778 967 ntTSL 5 BASIC34.99■■■■□ 3.19
RAPGEF4Q8WZA2 GLRX5-201ENST00000331334 1564 ntAPPRIS P1 TSL 1 (best) BASIC34.98■■■■□ 3.19
RAPGEF4Q8WZA2 GLRB-203ENST00000509282 1757 ntAPPRIS P1 TSL 1 (best) BASIC34.97■■■■□ 3.19
RAPGEF4Q8WZA2 ABHD17AP3-201ENST00000503096 1137 ntBASIC34.97■■■■□ 3.19
RAPGEF4Q8WZA2 BRD4-212ENST00000630599 726 ntTSL 2 BASIC34.97■■■■□ 3.19
RAPGEF4Q8WZA2 DTNBP1-212ENST00000622898 1305 ntTSL 1 (best) BASIC34.97■■■■□ 3.19
RAPGEF4Q8WZA2 U2AF1-201ENST00000291552 962 ntAPPRIS P3 TSL 1 (best) BASIC34.96■■■■□ 3.19
RAPGEF4Q8WZA2 HES6-205ENST00000409356 528 ntTSL 2 BASIC34.96■■■■□ 3.19
RAPGEF4Q8WZA2 STARD10-220ENST00000545082 1085 ntTSL 3 BASIC34.96■■■■□ 3.19
RAPGEF4Q8WZA2 U2AF1L5-202ENST00000619610 813 ntAPPRIS ALT2 TSL 1 (best) BASIC34.96■■■■□ 3.19
RAPGEF4Q8WZA2 XKR6-201ENST00000297303 1550 ntTSL 1 (best) BASIC34.95■■■■□ 3.18
RAPGEF4Q8WZA2 JMJD8-216ENST00000609261 1901 ntAPPRIS ALT2 TSL 1 (best) BASIC34.94■■■■□ 3.18
RAPGEF4Q8WZA2 CHML-204ENST00000638121 920 ntTSL 2 BASIC34.94■■■■□ 3.18
RAPGEF4Q8WZA2 AP000251.1-201ENST00000433071 822 ntTSL 1 (best) BASIC34.93■■■■□ 3.18
RAPGEF4Q8WZA2 NOP53-201ENST00000246802 1528 ntAPPRIS P1 TSL 1 (best) BASIC34.91■■■■□ 3.18
RAPGEF4Q8WZA2 GUSB-202ENST00000421103 1742 ntTSL 2 BASIC34.9■■■■□ 3.18
RAPGEF4Q8WZA2 EIF5A-208ENST00000573542 1089 ntAPPRIS P1 TSL 2 BASIC34.9■■■■□ 3.18
RAPGEF4Q8WZA2 AVEN-201ENST00000306730 1605 ntAPPRIS P1 TSL 1 (best) BASIC34.9■■■■□ 3.18
RAPGEF4Q8WZA2 BCL7B-201ENST00000223368 1975 ntAPPRIS P1 TSL 1 (best) BASIC34.9■■■■□ 3.18
RAPGEF4Q8WZA2 TCEA2-204ENST00000395053 1733 ntTSL 1 (best) BASIC34.89■■■■□ 3.18
RAPGEF4Q8WZA2 PPP4R4-202ENST00000328839 876 ntTSL 1 (best) BASIC34.89■■■■□ 3.18
RAPGEF4Q8WZA2 AL161658.1-201ENST00000623641 1967 ntBASIC34.88■■■■□ 3.17
RAPGEF4Q8WZA2 WHRN-203ENST00000374057 1718 ntTSL 2 BASIC34.88■■■■□ 3.17
RAPGEF4Q8WZA2 BCL7B-202ENST00000411832 1458 ntTSL 2 BASIC34.87■■■■□ 3.17
RAPGEF4Q8WZA2 RUNX2-203ENST00000371436 1588 ntAPPRIS ALT2 TSL 5 BASIC34.87■■■■□ 3.17
RAPGEF4Q8WZA2 MSX1-201ENST00000382723 1939 ntAPPRIS P1 TSL 1 (best) BASIC34.86■■■■□ 3.17
RAPGEF4Q8WZA2 HES7-202ENST00000541682 1674 ntAPPRIS ALT1 TSL 1 (best) BASIC34.85■■■■□ 3.17
RAPGEF4Q8WZA2 RBPMS-209ENST00000520161 842 ntTSL 2 BASIC34.84■■■■□ 3.17
RAPGEF4Q8WZA2 GATA6-202ENST00000581694 2057 ntAPPRIS P1 TSL 1 (best) BASIC34.84■■■■□ 3.17
RAPGEF4Q8WZA2 ARL6IP4-211ENST00000454885 1318 ntAPPRIS ALT2 TSL 1 (best) BASIC34.83■■■■□ 3.17
RAPGEF4Q8WZA2 AP000911.3-201ENST00000526377 1130 ntTSL 3 BASIC34.83■■■■□ 3.17
RAPGEF4Q8WZA2 TMEM229A-201ENST00000455783 2108 ntAPPRIS P1 BASIC34.82■■■■□ 3.17
RAPGEF4Q8WZA2 UCK1-201ENST00000372208 2063 ntTSL 1 (best) BASIC34.82■■■■□ 3.16
RAPGEF4Q8WZA2 TPRA1-201ENST00000296210 1725 ntTSL 1 (best) BASIC34.81■■■■□ 3.16
RAPGEF4Q8WZA2 SMDT1-201ENST00000331479 1567 ntAPPRIS P1 TSL 1 (best) BASIC34.8■■■■□ 3.16
RAPGEF4Q8WZA2 MRPL51-201ENST00000229238 1234 ntAPPRIS P1 TSL 1 (best) BASIC34.8■■■■□ 3.16
RAPGEF4Q8WZA2 C14orf80-202ENST00000334656 1358 ntAPPRIS ALT2 TSL 2 BASIC34.79■■■■□ 3.16
RAPGEF4Q8WZA2 CISD3-204ENST00000613478 2074 ntAPPRIS P1 TSL 2 BASIC34.79■■■■□ 3.16
RAPGEF4Q8WZA2 MLST8-203ENST00000397124 1691 ntAPPRIS P3 TSL 5 BASIC34.79■■■■□ 3.16
RAPGEF4Q8WZA2 CSPG5-205ENST00000610462 2073 ntTSL 5 BASIC34.78■■■■□ 3.16
RAPGEF4Q8WZA2 LINC02323-201ENST00000559946 1603 ntTSL 3 BASIC34.78■■■■□ 3.16
RAPGEF4Q8WZA2 PTPRF-216ENST00000617451 1129 ntTSL 5 BASIC34.78■■■■□ 3.16
RAPGEF4Q8WZA2 TMEM251-202ENST00000415050 1303 ntTSL 2 BASIC34.78■■■■□ 3.16
RAPGEF4Q8WZA2 FAM189B-210ENST00000621094 1335 ntTSL 1 (best) BASIC34.78■■■■□ 3.16
RAPGEF4Q8WZA2 CTXN1-201ENST00000318978 1274 ntAPPRIS P1 TSL 1 (best) BASIC34.77■■■■□ 3.16
RAPGEF4Q8WZA2 AC231981.1-201ENST00000450917 974 ntTSL 3 BASIC34.77■■■■□ 3.16
RAPGEF4Q8WZA2 AC009041.3-201ENST00000564390 879 ntTSL 5 BASIC34.77■■■■□ 3.16
RAPGEF4Q8WZA2 SULT4A1-201ENST00000330884 2468 ntAPPRIS P1 TSL 1 (best) BASIC34.75■■■■□ 3.15
RAPGEF4Q8WZA2 PPP3CC-204ENST00000518852 1598 ntTSL 2 BASIC34.74■■■■□ 3.15
RAPGEF4Q8WZA2 CRNDE-206ENST00000559432 587 ntTSL 3 BASIC34.74■■■■□ 3.15
RAPGEF4Q8WZA2 PI4KAP1-202ENST00000611748 1906 ntTSL 1 (best) BASIC34.73■■■■□ 3.15
RAPGEF4Q8WZA2 MAZ-208ENST00000563402 1461 ntTSL 5 BASIC34.72■■■■□ 3.15
RAPGEF4Q8WZA2 MAZ-210ENST00000566906 1455 ntTSL 5 BASIC34.72■■■■□ 3.15
RAPGEF4Q8WZA2 HNRNPAB-204ENST00000504898 1785 ntAPPRIS P4 TSL 1 (best) BASIC34.72■■■■□ 3.15
RAPGEF4Q8WZA2 LINC00273-201ENST00000539813 1452 ntBASIC34.71■■■■□ 3.15
RAPGEF4Q8WZA2 ZDHHC16-201ENST00000345745 1519 ntTSL 1 (best) BASIC34.71■■■■□ 3.15
RAPGEF4Q8WZA2 ATP8B2-201ENST00000368487 1523 ntTSL 1 (best) BASIC34.71■■■■□ 3.15
RAPGEF4Q8WZA2 CHST11-202ENST00000546689 756 ntTSL 2 BASIC34.71■■■■□ 3.15
RAPGEF4Q8WZA2 UBALD1-203ENST00000587649 707 ntTSL 3 BASIC34.71■■■■□ 3.15
RAPGEF4Q8WZA2 VEGFA-202ENST00000324450 954 ntTSL 1 (best) BASIC34.7■■■■□ 3.15
RAPGEF4Q8WZA2 VEGFA-203ENST00000372055 1286 ntTSL 1 (best) BASIC34.7■■■■□ 3.15
Retrieved 100 of 98,524 protein–RNA pairs in 19.2 ms