Protein–RNA interactions for Protein: Q02388

COL7A1, Collagen alpha-1(VII) chain, humanhuman

Predictions only

Length 2,944 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1Q02388 NOXA1-201ENST00000341349 1678 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
COL7A1Q02388 ACTR3B-202ENST00000377776 1566 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
COL7A1Q02388 CAAP1-205ENST00000520187 773 ntTSL 5 BASIC19.41■□□□□ 0.7
COL7A1Q02388 KIAA2013-203ENST00000616327 2170 ntAPPRIS P1 TSL 5 BASIC19.4■□□□□ 0.7
COL7A1Q02388 MAP3K8-203ENST00000375322 932 ntTSL 2 BASIC19.4■□□□□ 0.7
COL7A1Q02388 AC004837.3-201ENST00000420748 565 ntTSL 4 BASIC19.4■□□□□ 0.7
COL7A1Q02388 PTCH1-210ENST00000468211 1254 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
COL7A1Q02388 C1orf232-201ENST00000634842 643 ntAPPRIS P5 TSL 5 BASIC19.4■□□□□ 0.7
COL7A1Q02388 RNF130-201ENST00000261947 1766 ntTSL 1 (best) BASIC19.39■□□□□ 0.7
COL7A1Q02388 CTDNEP1-210ENST00000574322 1708 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
COL7A1Q02388 NTF6A-201ENST00000591175 560 ntBASIC19.39■□□□□ 0.69
COL7A1Q02388 UBA52-204ENST00000595158 743 ntAPPRIS P1 TSL 3 BASIC19.38■□□□□ 0.69
COL7A1Q02388 UBE2L6-201ENST00000287156 1354 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
COL7A1Q02388 FAM78B-202ENST00000354422 1475 ntAPPRIS P1 TSL 2 BASIC19.37■□□□□ 0.69
COL7A1Q02388 PKIG-207ENST00000372894 1191 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
COL7A1Q02388 EBPL-201ENST00000242827 914 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
COL7A1Q02388 SLC9A3R2-202ENST00000432365 1564 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
COL7A1Q02388 MXD3-208ENST00000513063 861 ntAPPRIS P1 TSL 5 BASIC19.35■□□□□ 0.69
COL7A1Q02388 CPNE1-203ENST00000397442 1695 ntTSL 5 BASIC19.35■□□□□ 0.69
COL7A1Q02388 SDCCAG3-204ENST00000371725 2129 ntAPPRIS ALT2 TSL 5 BASIC19.34■□□□□ 0.69
COL7A1Q02388 AC068134.2-201ENST00000437095 576 ntTSL 3 BASIC19.33■□□□□ 0.68
COL7A1Q02388 C11orf96-203ENST00000617612 1294 ntAPPRIS P1 BASIC19.33■□□□□ 0.68
COL7A1Q02388 BRF1-221ENST00000619151 1530 ntTSL 5 BASIC19.33■□□□□ 0.68
COL7A1Q02388 VEGFA-202ENST00000324450 954 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
COL7A1Q02388 CDKN3-202ENST00000335183 893 ntAPPRIS P2 TSL 1 (best) BASIC19.32■□□□□ 0.68
COL7A1Q02388 VEGFA-203ENST00000372055 1286 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
COL7A1Q02388 VEGFA-213ENST00000482630 1146 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
COL7A1Q02388 CDKN3-211ENST00000611205 874 ntAPPRIS ALT2 TSL 5 BASIC19.32■□□□□ 0.68
COL7A1Q02388 VEGFA-227ENST00000615393 984 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
COL7A1Q02388 VEGFA-228ENST00000617771 1116 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
COL7A1Q02388 VEGFA-229ENST00000621747 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
COL7A1Q02388 VEGFA-230ENST00000640482 1065 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
COL7A1Q02388 VEGFA-232ENST00000640653 1170 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
COL7A1Q02388 RUNX2-203ENST00000371436 1588 ntAPPRIS ALT2 TSL 5 BASIC19.32■□□□□ 0.68
COL7A1Q02388 ATP6V1E2-204ENST00000522587 1559 ntAPPRIS P1 TSL 3 BASIC19.31■□□□□ 0.68
COL7A1Q02388 AC012354.3-201ENST00000623734 483 ntBASIC19.31■□□□□ 0.68
COL7A1Q02388 LINC01918-201ENST00000436841 797 ntTSL 2 BASIC19.31■□□□□ 0.68
COL7A1Q02388 METTL24-201ENST00000338882 1119 ntAPPRIS P1 TSL 5 BASIC19.3■□□□□ 0.68
COL7A1Q02388 RPS20-211ENST00000524349 752 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
COL7A1Q02388 MMP28-203ENST00000612672 1092 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
COL7A1Q02388 SCX-201ENST00000567180 999 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
COL7A1Q02388 GNPTAB-206ENST00000549940 1678 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
COL7A1Q02388 NADK2-202ENST00000381937 2243 ntAPPRIS P1 TSL 2 BASIC19.29■□□□□ 0.68
COL7A1Q02388 MXD3-203ENST00000439742 1483 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
COL7A1Q02388 ACOT1-202ENST00000557556 1271 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
COL7A1Q02388 CRNDE-206ENST00000559432 587 ntTSL 3 BASIC19.28■□□□□ 0.68
COL7A1Q02388 CTXN1-201ENST00000318978 1274 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
COL7A1Q02388 NPW-202ENST00000566435 991 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
COL7A1Q02388 ABHD17A-201ENST00000250974 1630 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
COL7A1Q02388 ATP8B2-201ENST00000368487 1523 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
COL7A1Q02388 MDFIC-208ENST00000614186 1068 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
COL7A1Q02388 WHRN-203ENST00000374057 1718 ntTSL 2 BASIC19.27■□□□□ 0.67
COL7A1Q02388 AGO3-204ENST00000397828 1035 ntTSL 2 BASIC19.26■□□□□ 0.67
COL7A1Q02388 AC012615.2-201ENST00000586259 447 ntTSL 4 BASIC19.26■□□□□ 0.67
COL7A1Q02388 LIME1-206ENST00000487026 805 ntAPPRIS ALT2 TSL 5 BASIC19.26■□□□□ 0.67
COL7A1Q02388 RASGEF1C-207ENST00000615330 2268 ntTSL 5 BASIC19.26■□□□□ 0.67
COL7A1Q02388 AP000251.1-201ENST00000433071 822 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
COL7A1Q02388 AL033527.3-201ENST00000566366 1196 ntBASIC19.25■□□□□ 0.67
COL7A1Q02388 CHPT1-201ENST00000229266 1585 ntAPPRIS P2 TSL 1 (best) BASIC19.24■□□□□ 0.67
COL7A1Q02388 SSBP4-202ENST00000348495 1721 ntAPPRIS ALT1 TSL 2 BASIC19.24■□□□□ 0.67
COL7A1Q02388 TRIM52-AS1-202ENST00000507434 672 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
COL7A1Q02388 S1PR4-201ENST00000246115 1565 ntAPPRIS P1 BASIC19.23■□□□□ 0.67
COL7A1Q02388 MRPL23-202ENST00000381519 643 ntAPPRIS P1 TSL 3 BASIC19.23■□□□□ 0.67
COL7A1Q02388 MRPL23-205ENST00000397298 736 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
COL7A1Q02388 TSR3-201ENST00000007390 1243 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
COL7A1Q02388 CBWD5-202ENST00000377384 1347 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
COL7A1Q02388 RPRML-201ENST00000322329 1093 ntAPPRIS P1 BASIC19.23■□□□□ 0.67
COL7A1Q02388 SDCCAG3-202ENST00000357365 2304 ntAPPRIS P4 TSL 5 BASIC19.23■□□□□ 0.67
COL7A1Q02388 TMEM114-202ENST00000568335 899 ntTSL 3 BASIC19.22■□□□□ 0.67
COL7A1Q02388 CHML-204ENST00000638121 920 ntTSL 2 BASIC19.22■□□□□ 0.67
COL7A1Q02388 TGIF1-202ENST00000343820 2076 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
COL7A1Q02388 KMT2E-AS1-201ENST00000453677 736 ntTSL 3 BASIC19.21■□□□□ 0.67
COL7A1Q02388 CTDNEP1-201ENST00000318988 1549 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
COL7A1Q02388 TPT1-202ENST00000379055 948 ntTSL 2 BASIC19.21■□□□□ 0.67
COL7A1Q02388 PXMP2-205ENST00000543589 632 ntTSL 3 BASIC19.21■□□□□ 0.67
COL7A1Q02388 C2orf88-204ENST00000409870 1441 ntAPPRIS P1 TSL 2 BASIC19.2■□□□□ 0.66
COL7A1Q02388 AC018358.1-201ENST00000631079 1402 ntBASIC19.2■□□□□ 0.66
COL7A1Q02388 CEP120-209ENST00000515110 606 ntTSL 3 BASIC19.2■□□□□ 0.66
COL7A1Q02388 TMEM251-202ENST00000415050 1303 ntTSL 2 BASIC19.2■□□□□ 0.66
COL7A1Q02388 BTBD19-203ENST00000450269 1572 ntAPPRIS P1 TSL 5 BASIC19.2■□□□□ 0.66
COL7A1Q02388 AC008813.1-201ENST00000536597 885 ntBASIC19.19■□□□□ 0.66
COL7A1Q02388 TMEM80-202ENST00000397512 1572 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
COL7A1Q02388 SNX5-219ENST00000606602 885 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
COL7A1Q02388 RAD51-210ENST00000557850 1397 ntTSL 2 BASIC19.19■□□□□ 0.66
COL7A1Q02388 ZSCAN1-202ENST00000391700 952 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
COL7A1Q02388 BANF1-208ENST00000533166 1135 ntAPPRIS P1 TSL 2 BASIC19.18■□□□□ 0.66
COL7A1Q02388 AC231981.1-201ENST00000450917 974 ntTSL 3 BASIC19.18■□□□□ 0.66
COL7A1Q02388 NOG-201ENST00000332822 1892 ntAPPRIS P1 BASIC19.18■□□□□ 0.66
COL7A1Q02388 CLTA-207ENST00000470744 1102 ntTSL 2 BASIC19.17■□□□□ 0.66
COL7A1Q02388 HOXB3-207ENST00000472863 1909 ntTSL 2 BASIC19.16■□□□□ 0.66
COL7A1Q02388 MANF-204ENST00000528157 1153 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
COL7A1Q02388 AC092902.2-221ENST00000628476 965 ntTSL 5 BASIC19.15■□□□□ 0.66
COL7A1Q02388 MYLIP-202ENST00000356840 1666 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
COL7A1Q02388 IL1R1-201ENST00000409288 1735 ntTSL 5 BASIC19.14■□□□□ 0.66
COL7A1Q02388 KIF13A-207ENST00000502704 1330 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
COL7A1Q02388 BMP7-202ENST00000395864 1746 ntTSL 5 BASIC19.13■□□□□ 0.65
COL7A1Q02388 SLC25A10-203ENST00000545862 1911 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
COL7A1Q02388 HYI-213ENST00000583037 1322 ntTSL 5 BASIC19.13■□□□□ 0.65
COL7A1Q02388 AGPAT2-202ENST00000371696 1512 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
COL7A1Q02388 PXMP2-201ENST00000317479 957 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 18.6 ms