Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 MAPK3-205ENST00000395202 1008 ntTSL 1 (best) BASIC37.61■■■■□ 3.61
MSH6P52701 PTPMT1-203ENST00000426530 1014 ntTSL 1 (best) BASIC37.61■■■■□ 3.61
MSH6P52701 FOXD1-202ENST00000615637 2272 ntAPPRIS P1 BASIC37.61■■■■□ 3.61
MSH6P52701 CTDNEP1-201ENST00000318988 1549 ntAPPRIS P1 TSL 1 (best) BASIC37.61■■■■□ 3.61
MSH6P52701 U2AF1-203ENST00000398137 1019 ntTSL 1 (best) BASIC37.57■■■■□ 3.61
MSH6P52701 U2AF1L5-212ENST00000639996 1019 ntTSL 1 (best) BASIC37.57■■■■□ 3.61
MSH6P52701 BRF1-221ENST00000619151 1530 ntTSL 5 BASIC37.57■■■■□ 3.6
MSH6P52701 GPX1-201ENST00000419349 1106 ntBASIC37.55■■■■□ 3.6
MSH6P52701 POLR3H-201ENST00000337566 1330 ntTSL 1 (best) BASIC37.53■■■■□ 3.6
MSH6P52701 CHML-204ENST00000638121 920 ntTSL 2 BASIC37.53■■■■□ 3.6
MSH6P52701 UBA52-204ENST00000595158 743 ntAPPRIS P1 TSL 3 BASIC37.52■■■■□ 3.6
MSH6P52701 RNF126P1-201ENST00000567452 1320 ntBASIC37.51■■■■□ 3.6
MSH6P52701 SSTR4-201ENST00000255008 1427 ntAPPRIS P1 BASIC37.51■■■■□ 3.6
MSH6P52701 MAP3K8-203ENST00000375322 932 ntTSL 2 BASIC37.51■■■■□ 3.59
MSH6P52701 ZBTB25-202ENST00000555220 1440 ntTSL 1 (best) BASIC37.48■■■■□ 3.59
MSH6P52701 PKIG-207ENST00000372894 1191 ntAPPRIS P1 TSL 1 (best) BASIC37.46■■■■□ 3.59
MSH6P52701 RPS20-211ENST00000524349 752 ntTSL 1 (best) BASIC37.46■■■■□ 3.59
MSH6P52701 RNF130-201ENST00000261947 1766 ntTSL 1 (best) BASIC37.45■■■■□ 3.59
MSH6P52701 CTXN1-201ENST00000318978 1274 ntAPPRIS P1 TSL 1 (best) BASIC37.44■■■■□ 3.58
MSH6P52701 IGFBP2-201ENST00000233809 1439 ntAPPRIS P1 TSL 1 (best) BASIC37.43■■■■□ 3.58
MSH6P52701 B4GALT2-203ENST00000372324 2203 ntAPPRIS P1 TSL 1 (best) BASIC37.43■■■■□ 3.58
MSH6P52701 AC005540.1-201ENST00000413911 919 ntTSL 3 BASIC37.43■■■■□ 3.58
MSH6P52701 SLC9A3R2-202ENST00000432365 1564 ntTSL 1 (best) BASIC37.42■■■■□ 3.58
MSH6P52701 CDKN3-202ENST00000335183 893 ntAPPRIS P2 TSL 1 (best) BASIC37.42■■■■□ 3.58
MSH6P52701 CDKN3-211ENST00000611205 874 ntAPPRIS ALT2 TSL 5 BASIC37.42■■■■□ 3.58
MSH6P52701 BLOC1S3-202ENST00000587722 732 ntAPPRIS P1 BASIC37.41■■■■□ 3.58
MSH6P52701 AP000251.1-201ENST00000433071 822 ntTSL 1 (best) BASIC37.4■■■■□ 3.58
MSH6P52701 TPT1-202ENST00000379055 948 ntTSL 2 BASIC37.39■■■■□ 3.58
MSH6P52701 CBWD5-202ENST00000377384 1347 ntTSL 1 (best) BASIC37.39■■■■□ 3.58
MSH6P52701 GALK1-205ENST00000588479 1866 ntAPPRIS P1 TSL 1 (best) BASIC37.38■■■■□ 3.57
MSH6P52701 AC012354.3-201ENST00000623734 483 ntBASIC37.37■■■■□ 3.57
MSH6P52701 EI24-212ENST00000615917 1407 ntTSL 2 BASIC37.35■■■■□ 3.57
MSH6P52701 NTF6A-201ENST00000591175 560 ntBASIC37.35■■■■□ 3.57
MSH6P52701 HNRNPUL1-221ENST00000617305 1018 ntTSL 1 (best) BASIC37.35■■■■□ 3.57
MSH6P52701 RUNX2-203ENST00000371436 1588 ntAPPRIS ALT2 TSL 5 BASIC37.34■■■■□ 3.57
MSH6P52701 AC092902.2-221ENST00000628476 965 ntTSL 5 BASIC37.34■■■■□ 3.57
MSH6P52701 GNPTAB-206ENST00000549940 1678 ntTSL 1 (best) BASIC37.34■■■■□ 3.57
MSH6P52701 ABHD17A-201ENST00000250974 1630 ntTSL 1 (best) BASIC37.34■■■■□ 3.57
MSH6P52701 ATP6V1E2-204ENST00000522587 1559 ntAPPRIS P1 TSL 3 BASIC37.34■■■■□ 3.57
MSH6P52701 BMP7-202ENST00000395864 1746 ntTSL 5 BASIC37.32■■■■□ 3.56
MSH6P52701 RUNX2-211ENST00000625924 1458 ntAPPRIS ALT2 TSL 1 (best) BASIC37.31■■■■□ 3.56
MSH6P52701 ATP8B2-201ENST00000368487 1523 ntTSL 1 (best) BASIC37.31■■■■□ 3.56
MSH6P52701 SSBP4-202ENST00000348495 1721 ntAPPRIS ALT1 TSL 2 BASIC37.31■■■■□ 3.56
MSH6P52701 CPNE1-203ENST00000397442 1695 ntTSL 5 BASIC37.3■■■■□ 3.56
MSH6P52701 AGO3-204ENST00000397828 1035 ntTSL 2 BASIC37.29■■■■□ 3.56
MSH6P52701 MXD3-203ENST00000439742 1483 ntAPPRIS P1 TSL 1 (best) BASIC37.27■■■■□ 3.56
MSH6P52701 RPRML-201ENST00000322329 1093 ntAPPRIS P1 BASIC37.27■■■■□ 3.56
MSH6P52701 CLTA-207ENST00000470744 1102 ntTSL 2 BASIC37.27■■■■□ 3.56
MSH6P52701 CEP120-209ENST00000515110 606 ntTSL 3 BASIC37.26■■■■□ 3.55
MSH6P52701 BANF1-208ENST00000533166 1135 ntAPPRIS P1 TSL 2 BASIC37.26■■■■□ 3.55
MSH6P52701 AGPAT2-202ENST00000371696 1512 ntAPPRIS P1 TSL 1 (best) BASIC37.25■■■■□ 3.55
MSH6P52701 AC231981.1-201ENST00000450917 974 ntTSL 3 BASIC37.25■■■■□ 3.55
MSH6P52701 CHST11-202ENST00000546689 756 ntTSL 2 BASIC37.25■■■■□ 3.55
MSH6P52701 TWIST1-201ENST00000242261 1666 ntAPPRIS P1 TSL 1 (best) BASIC37.24■■■■□ 3.55
MSH6P52701 NOXA1-201ENST00000341349 1678 ntAPPRIS P1 TSL 1 (best) BASIC37.24■■■■□ 3.55
MSH6P52701 BTBD19-203ENST00000450269 1572 ntAPPRIS P1 TSL 5 BASIC37.24■■■■□ 3.55
MSH6P52701 AC073111.5-206ENST00000642087 859 ntAPPRIS P1 BASIC37.21■■■■□ 3.55
MSH6P52701 CHPT1-201ENST00000229266 1585 ntAPPRIS P2 TSL 1 (best) BASIC37.21■■■■□ 3.55
MSH6P52701 RAD51-210ENST00000557850 1397 ntTSL 2 BASIC37.21■■■■□ 3.55
MSH6P52701 C1orf122-201ENST00000373042 973 ntAPPRIS P3 TSL 1 (best) BASIC37.2■■■■□ 3.55
MSH6P52701 PTCH1-210ENST00000468211 1254 ntTSL 1 (best) BASIC37.19■■■■□ 3.54
MSH6P52701 KHSRP-213ENST00000619396 2226 ntAPPRIS ALT2 TSL 5 BASIC37.19■■■■□ 3.54
MSH6P52701 METTL24-201ENST00000338882 1119 ntAPPRIS P1 TSL 5 BASIC37.18■■■■□ 3.54
MSH6P52701 FAM168B-201ENST00000389915 944 ntAPPRIS P1 TSL 3 BASIC37.18■■■■□ 3.54
MSH6P52701 MDFIC-208ENST00000614186 1068 ntTSL 1 (best) BASIC37.18■■■■□ 3.54
MSH6P52701 WHRN-203ENST00000374057 1718 ntTSL 2 BASIC37.17■■■■□ 3.54
MSH6P52701 MXD3-208ENST00000513063 861 ntAPPRIS P1 TSL 5 BASIC37.17■■■■□ 3.54
MSH6P52701 TMEM80-202ENST00000397512 1572 ntAPPRIS ALT2 TSL 1 (best) BASIC37.16■■■■□ 3.54
MSH6P52701 MAPK3-201ENST00000263025 1861 ntAPPRIS P3 TSL 1 (best) BASIC37.16■■■■□ 3.54
MSH6P52701 KCNQ5-204ENST00000370392 1469 ntTSL 1 (best) BASIC37.14■■■■□ 3.54
MSH6P52701 S1PR4-201ENST00000246115 1565 ntAPPRIS P1 BASIC37.13■■■■□ 3.54
MSH6P52701 ENHO-201ENST00000399775 1082 ntAPPRIS P1 TSL 2 BASIC37.13■■■■□ 3.53
MSH6P52701 ACOT1-202ENST00000557556 1271 ntTSL 1 (best) BASIC37.13■■■■□ 3.53
MSH6P52701 INO80B-WBP1-202ENST00000452361 2040 ntAPPRIS P5 TSL 2 BASIC37.13■■■■□ 3.53
MSH6P52701 LIME1-206ENST00000487026 805 ntAPPRIS ALT2 TSL 5 BASIC37.09■■■■□ 3.53
MSH6P52701 KMT2E-AS1-201ENST00000453677 736 ntTSL 3 BASIC37.08■■■■□ 3.53
MSH6P52701 C2orf88-204ENST00000409870 1441 ntAPPRIS P1 TSL 2 BASIC37.07■■■■□ 3.52
MSH6P52701 PIK3R2-208ENST00000617642 1446 ntTSL 5 BASIC37.07■■■■□ 3.52
MSH6P52701 ZSCAN1-202ENST00000391700 952 ntTSL 1 (best) BASIC37.06■■■■□ 3.52
MSH6P52701 LINC01918-201ENST00000436841 797 ntTSL 2 BASIC37.06■■■■□ 3.52
MSH6P52701 SNX5-219ENST00000606602 885 ntTSL 1 (best) BASIC37.06■■■■□ 3.52
MSH6P52701 AC018358.1-201ENST00000631079 1402 ntBASIC37.06■■■■□ 3.52
MSH6P52701 TMEM251-202ENST00000415050 1303 ntTSL 2 BASIC37.06■■■■□ 3.52
MSH6P52701 MRPL23-202ENST00000381519 643 ntAPPRIS P1 TSL 3 BASIC37.05■■■■□ 3.52
MSH6P52701 HSD17B12-202ENST00000395700 994 ntTSL 1 (best) BASIC37.05■■■■□ 3.52
MSH6P52701 MRPL23-205ENST00000397298 736 ntAPPRIS P1 TSL 1 (best) BASIC37.05■■■■□ 3.52
MSH6P52701 ZDHHC16-201ENST00000345745 1519 ntTSL 1 (best) BASIC37.05■■■■□ 3.52
MSH6P52701 C11orf96-203ENST00000617612 1294 ntAPPRIS P1 BASIC37.04■■■■□ 3.52
MSH6P52701 AC022413.1-201ENST00000624602 984 ntBASIC37.04■■■■□ 3.52
MSH6P52701 KIAA2013-203ENST00000616327 2170 ntAPPRIS P1 TSL 5 BASIC37.04■■■■□ 3.52
MSH6P52701 TSR3-201ENST00000007390 1243 ntAPPRIS P1 TSL 1 (best) BASIC37.04■■■■□ 3.52
MSH6P52701 MANF-204ENST00000528157 1153 ntAPPRIS P1 TSL 1 (best) BASIC37.03■■■■□ 3.52
MSH6P52701 AC008813.1-201ENST00000536597 885 ntBASIC37.03■■■■□ 3.52
MSH6P52701 AL033527.3-201ENST00000566366 1196 ntBASIC37.02■■■■□ 3.52
MSH6P52701 CAPNS1-216ENST00000628306 1389 ntTSL 5 BASIC37.02■■■■□ 3.52
MSH6P52701 SLC2A4RG-201ENST00000266077 1731 ntAPPRIS P1 TSL 1 (best) BASIC37.01■■■■□ 3.52
MSH6P52701 VPS37D-201ENST00000324941 1624 ntAPPRIS P1 TSL 1 (best) BASIC37■■■■□ 3.51
MSH6P52701 KIF13A-207ENST00000502704 1330 ntTSL 1 (best) BASIC37■■■■□ 3.51
MSH6P52701 BAX-202ENST00000345358 793 ntAPPRIS P1 TSL 1 (best) BASIC37■■■■□ 3.51
MSH6P52701 HES4-202ENST00000428771 1040 ntTSL 2 BASIC37■■■■□ 3.51
Retrieved 100 of 98,524 protein–RNA pairs in 33.3 ms