Protein–RNA interactions for Protein: O75351

VPS4B, Vacuolar protein sorting-associated protein 4B, humanhuman

Predictions only

Length 444 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4BO75351 HAUS7-201ENST00000370210 1593 ntAPPRIS ALT2 TSL 2 BASIC25.63■■□□□ 1.69
VPS4BO75351 GKAP1-203ENST00000376371 1778 ntAPPRIS P1 TSL 1 (best) BASIC25.63■■□□□ 1.69
VPS4BO75351 ATPAF1-202ENST00000371937 1827 ntAPPRIS P1 TSL 1 (best) BASIC25.63■■□□□ 1.69
VPS4BO75351 FAM89B-201ENST00000316409 1409 ntTSL 1 (best) BASIC25.62■■□□□ 1.69
VPS4BO75351 AL391121.1-201ENST00000607967 1349 ntBASIC25.62■■□□□ 1.69
VPS4BO75351 ITGA9-203ENST00000422441 2282 ntTSL 1 (best) BASIC25.61■■□□□ 1.69
VPS4BO75351 SEC61G-204ENST00000450622 512 ntAPPRIS P1 TSL 2 BASIC25.61■■□□□ 1.69
VPS4BO75351 RNF150-204ENST00000507500 1530 ntTSL 1 (best) BASIC25.61■■□□□ 1.69
VPS4BO75351 SLC30A10-202ENST00000366926 1915 ntAPPRIS P1 TSL 1 (best) BASIC25.61■■□□□ 1.69
VPS4BO75351 TMEM9-201ENST00000367330 1959 ntAPPRIS P3 TSL 1 (best) BASIC25.6■■□□□ 1.69
VPS4BO75351 ARHGAP22-202ENST00000374170 2107 ntTSL 5 BASIC25.59■■□□□ 1.69
VPS4BO75351 GNPTAB-202ENST00000392919 760 ntTSL 1 (best) BASIC25.59■■□□□ 1.69
VPS4BO75351 ABHD17AP4-201ENST00000411545 909 ntBASIC25.59■■□□□ 1.69
VPS4BO75351 ZFP90-204ENST00000564323 560 ntTSL 4 BASIC25.59■■□□□ 1.69
VPS4BO75351 ZFP90-219ENST00000611381 695 ntTSL 1 (best) BASIC25.59■■□□□ 1.69
VPS4BO75351 HNRNPLP2-201ENST00000568980 1570 ntBASIC25.59■■□□□ 1.69
VPS4BO75351 GUSB-202ENST00000421103 1742 ntTSL 2 BASIC25.59■■□□□ 1.69
VPS4BO75351 TP53I13-201ENST00000301057 1530 ntAPPRIS P2 TSL 1 (best) BASIC25.58■■□□□ 1.69
VPS4BO75351 IL17D-201ENST00000304920 1861 ntAPPRIS P1 TSL 1 (best) BASIC25.58■■□□□ 1.69
VPS4BO75351 RDX-210ENST00000530301 1549 ntTSL 1 (best) BASIC25.58■■□□□ 1.68
VPS4BO75351 AC009097.4-201ENST00000566738 777 ntTSL 2 BASIC25.57■■□□□ 1.68
VPS4BO75351 CDKN2D-202ENST00000393599 1422 ntAPPRIS P1 TSL 1 (best) BASIC25.56■■□□□ 1.68
VPS4BO75351 PQLC1-203ENST00000397778 2555 ntAPPRIS P3 TSL 1 (best) BASIC25.56■■□□□ 1.68
VPS4BO75351 CGREF1-204ENST00000402550 1575 ntTSL 2 BASIC25.55■■□□□ 1.68
VPS4BO75351 MIR3665-201ENST00000578708 105 ntBASIC25.54■■□□□ 1.68
VPS4BO75351 WASH5P-204ENST00000632292 975 ntBASIC25.54■■□□□ 1.68
VPS4BO75351 JAG2-201ENST00000331782 5835 ntAPPRIS P1 TSL 1 (best) BASIC25.54■■□□□ 1.68
VPS4BO75351 TESK1-201ENST00000336395 2421 ntAPPRIS P1 TSL 1 (best) BASIC25.54■■□□□ 1.68
VPS4BO75351 FAAP20-204ENST00000400919 1413 ntTSL 3 BASIC25.54■■□□□ 1.68
VPS4BO75351 ADGRB2-204ENST00000398542 5176 ntTSL 5 BASIC25.53■■□□□ 1.68
VPS4BO75351 ARHGEF7-205ENST00000375739 5375 ntTSL 1 (best) BASIC25.53■■□□□ 1.68
VPS4BO75351 RASSF8-202ENST00000381352 2320 ntTSL 1 (best) BASIC25.52■■□□□ 1.68
VPS4BO75351 PDPK1-203ENST00000389224 2416 ntTSL 2 BASIC25.52■■□□□ 1.68
VPS4BO75351 HSPB11-201ENST00000194214 915 ntAPPRIS P1 TSL 1 (best) BASIC25.51■■□□□ 1.67
VPS4BO75351 H2AFV-205ENST00000381124 628 ntTSL 3 BASIC25.51■■□□□ 1.67
VPS4BO75351 PVT1-219ENST00000523427 938 ntTSL 3 BASIC25.51■■□□□ 1.67
VPS4BO75351 COX4I1-203ENST00000562336 873 ntAPPRIS P1 TSL 5 BASIC25.51■■□□□ 1.67
VPS4BO75351 GSC2-201ENST00000086933 1033 ntAPPRIS P1 TSL 5 BASIC25.51■■□□□ 1.67
VPS4BO75351 AP003068.2-202ENST00000526623 1662 ntTSL 2 BASIC25.51■■□□□ 1.67
VPS4BO75351 FGF18-201ENST00000274625 1986 ntAPPRIS P1 TSL 1 (best) BASIC25.51■■□□□ 1.67
VPS4BO75351 PLSCR3-209ENST00000574401 2032 ntAPPRIS P1 TSL 1 (best) BASIC25.51■■□□□ 1.67
VPS4BO75351 DPF1-202ENST00000412732 2303 ntTSL 1 (best) BASIC25.51■■□□□ 1.67
VPS4BO75351 YAP1-204ENST00000526343 2393 ntTSL 5 BASIC25.51■■□□□ 1.67
VPS4BO75351 MLEC-202ENST00000412616 841 ntTSL 3 BASIC25.5■■□□□ 1.67
VPS4BO75351 FAM185A-202ENST00000413034 1179 ntAPPRIS P4 TSL 5 BASIC25.5■■□□□ 1.67
VPS4BO75351 SLC9A3R2-202ENST00000432365 1564 ntTSL 1 (best) BASIC25.5■■□□□ 1.67
VPS4BO75351 NPTXR-202ENST00000640136 1503 ntAPPRIS P2 TSL 1 (best) BASIC25.5■■□□□ 1.67
VPS4BO75351 CCND3-203ENST00000372991 2085 ntAPPRIS P1 TSL 1 (best) BASIC25.49■■□□□ 1.67
VPS4BO75351 COL13A1-214ENST00000522165 2061 ntAPPRIS ALT2 TSL 5 BASIC25.49■■□□□ 1.67
VPS4BO75351 IRX1-201ENST00000302006 1858 ntAPPRIS P1 TSL 1 (best) BASIC25.49■■□□□ 1.67
VPS4BO75351 GLRB-203ENST00000509282 1757 ntAPPRIS P1 TSL 1 (best) BASIC25.49■■□□□ 1.67
VPS4BO75351 PCYT2-206ENST00000571105 1628 ntTSL 5 BASIC25.48■■□□□ 1.67
VPS4BO75351 MXD3-203ENST00000439742 1483 ntAPPRIS P1 TSL 1 (best) BASIC25.48■■□□□ 1.67
VPS4BO75351 SPIRE1-202ENST00000409402 5665 ntAPPRIS ALT2 TSL 1 (best) BASIC25.48■■□□□ 1.67
VPS4BO75351 TSPOAP1-AS1-203ENST00000579527 2042 ntTSL 2 BASIC25.47■■□□□ 1.67
VPS4BO75351 AC142086.6-201ENST00000621154 1765 ntBASIC25.47■■□□□ 1.67
VPS4BO75351 SHARPIN-202ENST00000398712 1765 ntAPPRIS P1 TSL 1 (best) BASIC25.46■■□□□ 1.67
VPS4BO75351 ZNF787-203ENST00000610935 1925 ntAPPRIS P1 TSL 1 (best) BASIC25.46■■□□□ 1.67
VPS4BO75351 XKR6-201ENST00000297303 1550 ntTSL 1 (best) BASIC25.46■■□□□ 1.67
VPS4BO75351 COL13A1-213ENST00000520267 2276 ntAPPRIS ALT2 TSL 5 BASIC25.46■■□□□ 1.67
VPS4BO75351 PLSCR3-202ENST00000535512 2067 ntAPPRIS P1 TSL 1 (best) BASIC25.45■■□□□ 1.66
VPS4BO75351 EXOC3-209ENST00000512944 2825 ntAPPRIS P1 TSL 1 (best) BASIC25.45■■□□□ 1.66
VPS4BO75351 FAAH-201ENST00000243167 2094 ntAPPRIS P1 TSL 1 (best) BASIC25.44■■□□□ 1.66
VPS4BO75351 ADAP1-201ENST00000265846 2363 ntAPPRIS P1 TSL 1 (best) BASIC25.44■■□□□ 1.66
VPS4BO75351 HLA-V-202ENST00000446817 847 ntBASIC25.44■■□□□ 1.66
VPS4BO75351 MSANTD2-203ENST00000524950 1109 ntTSL 2 BASIC25.44■■□□□ 1.66
VPS4BO75351 CARS2-201ENST00000257347 1879 ntAPPRIS P1 TSL 1 (best) BASIC25.44■■□□□ 1.66
VPS4BO75351 BMP7-204ENST00000450594 1857 ntTSL 2 BASIC25.44■■□□□ 1.66
VPS4BO75351 SPATA5L1-208ENST00000638607 1863 ntTSL 2 BASIC25.44■■□□□ 1.66
VPS4BO75351 BCL7C-201ENST00000215115 1740 ntAPPRIS P1 TSL 1 (best) BASIC25.43■■□□□ 1.66
VPS4BO75351 COL13A1-203ENST00000398969 2267 ntAPPRIS ALT2 TSL 5 BASIC25.43■■□□□ 1.66
VPS4BO75351 MTCH1-202ENST00000373627 2057 ntAPPRIS P1 TSL 1 (best) BASIC25.43■■□□□ 1.66
VPS4BO75351 EBPL-202ENST00000378268 680 ntTSL 3 BASIC25.43■■□□□ 1.66
VPS4BO75351 AL133380.1-201ENST00000506013 324 ntBASIC25.43■■□□□ 1.66
VPS4BO75351 HDGF-210ENST00000537739 2073 ntAPPRIS P1 TSL 1 (best) BASIC25.43■■□□□ 1.66
VPS4BO75351 ECI1-203ENST00000562238 948 ntTSL 1 (best) BASIC25.42■■□□□ 1.66
VPS4BO75351 ARPC5L-202ENST00000353214 2507 ntAPPRIS P1 TSL 2 BASIC25.42■■□□□ 1.66
VPS4BO75351 THAP11-201ENST00000303596 2114 ntAPPRIS P1 BASIC25.41■■□□□ 1.66
VPS4BO75351 AP000911.1-206ENST00000531938 711 ntTSL 3 BASIC25.41■■□□□ 1.66
VPS4BO75351 HOXB3-212ENST00000498678 2196 ntAPPRIS P1 TSL 2 BASIC25.4■■□□□ 1.66
VPS4BO75351 AL139393.2-201ENST00000608721 2025 ntBASIC25.39■■□□□ 1.66
VPS4BO75351 MBP-237ENST00000579129 1052 ntTSL 5 BASIC25.39■■□□□ 1.66
VPS4BO75351 MTCH1-201ENST00000373616 2006 ntTSL 1 (best) BASIC25.39■■□□□ 1.65
VPS4BO75351 ACTR3B-201ENST00000256001 2216 ntAPPRIS P1 TSL 1 (best) BASIC25.39■■□□□ 1.65
VPS4BO75351 AGPAT2-202ENST00000371696 1512 ntAPPRIS P1 TSL 1 (best) BASIC25.38■■□□□ 1.65
VPS4BO75351 FOXG1-201ENST00000313071 4890 ntAPPRIS P1 BASIC25.38■■□□□ 1.65
VPS4BO75351 PGAM5-201ENST00000317555 1182 ntTSL 1 (best) BASIC25.37■■□□□ 1.65
VPS4BO75351 CCNYL1-205ENST00000420822 952 ntTSL 1 (best) BASIC25.37■■□□□ 1.65
VPS4BO75351 NOP53-201ENST00000246802 1528 ntAPPRIS P1 TSL 1 (best) BASIC25.37■■□□□ 1.65
VPS4BO75351 C1orf122-204ENST00000468084 1234 ntAPPRIS ALT2 TSL 2 BASIC25.36■■□□□ 1.65
VPS4BO75351 WHRN-203ENST00000374057 1718 ntTSL 2 BASIC25.36■■□□□ 1.65
VPS4BO75351 ZIC2-201ENST00000376335 2983 ntAPPRIS P1 TSL 1 (best) BASIC25.35■■□□□ 1.65
VPS4BO75351 ATF4-201ENST00000337304 2019 ntAPPRIS P1 TSL 1 (best) BASIC25.35■■□□□ 1.65
VPS4BO75351 AC087741.3-201ENST00000624270 1347 ntBASIC25.35■■□□□ 1.65
VPS4BO75351 COPRS-202ENST00000378634 1041 ntTSL 2 BASIC25.34■■□□□ 1.65
VPS4BO75351 AC044849.2-201ENST00000606596 710 ntBASIC25.34■■□□□ 1.65
VPS4BO75351 EMID1-203ENST00000404820 2118 ntTSL 5 BASIC25.33■■□□□ 1.65
VPS4BO75351 GPR75-ASB3-201ENST00000406625 2113 ntAPPRIS P1 TSL 2 BASIC25.33■■□□□ 1.65
VPS4BO75351 CIC-201ENST00000160740 6111 ntAPPRIS ALT1 TSL 5 BASIC25.33■■□□□ 1.65
VPS4BO75351 TNFSF12-201ENST00000293825 1553 ntAPPRIS P1 TSL 1 (best) BASIC25.33■■□□□ 1.65
Retrieved 100 of 98,524 protein–RNA pairs in 52.8 ms