Protein–RNA interactions for Protein: A0A5B6

TCRBV3S1, T-cell receptor beta variable 28 (Fragment), humanhuman

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TCRBV3S1A0A5B6 FGF2-203ENST00000614010 867 ntTSL 1 (best) BASIC24.79■■□□□ 1.56
TCRBV3S1A0A5B6 IHH-201ENST00000295731 2023 ntAPPRIS P1 TSL 1 (best) BASIC24.79■■□□□ 1.56
TCRBV3S1A0A5B6 NRGN-201ENST00000284292 1306 ntAPPRIS P1 TSL 1 (best) BASIC24.79■■□□□ 1.56
TCRBV3S1A0A5B6 TMEM55B-201ENST00000250489 1961 ntAPPRIS P3 TSL 1 (best) BASIC24.78■■□□□ 1.56
TCRBV3S1A0A5B6 CYBA-201ENST00000261623 797 ntAPPRIS P1 TSL 1 (best) BASIC24.78■■□□□ 1.56
TCRBV3S1A0A5B6 BCL7C-201ENST00000215115 1740 ntAPPRIS P1 TSL 1 (best) BASIC24.78■■□□□ 1.56
TCRBV3S1A0A5B6 CLK2-201ENST00000355560 2120 ntAPPRIS ALT1 TSL 5 BASIC24.77■■□□□ 1.56
TCRBV3S1A0A5B6 SERPING1-205ENST00000403558 2231 ntTSL 5 BASIC24.77■■□□□ 1.56
TCRBV3S1A0A5B6 FAM107B-205ENST00000378467 2374 ntAPPRIS P1 TSL 1 (best) BASIC24.76■■□□□ 1.55
TCRBV3S1A0A5B6 PHF23-205ENST00000571362 1768 ntTSL 2 BASIC24.75■■□□□ 1.55
TCRBV3S1A0A5B6 ZNF768-201ENST00000380412 2315 ntAPPRIS P2 TSL 1 (best) BASIC24.75■■□□□ 1.55
TCRBV3S1A0A5B6 SOX1-201ENST00000330949 2842 ntAPPRIS P1 BASIC24.75■■□□□ 1.55
TCRBV3S1A0A5B6 GUSB-202ENST00000421103 1742 ntTSL 2 BASIC24.75■■□□□ 1.55
TCRBV3S1A0A5B6 FADD-201ENST00000301838 1841 ntAPPRIS P1 TSL 1 (best) BASIC24.75■■□□□ 1.55
TCRBV3S1A0A5B6 SHF-207ENST00000560540 2062 ntTSL 5 BASIC24.74■■□□□ 1.55
TCRBV3S1A0A5B6 ZFAND2B-208ENST00000409594 2021 ntTSL 2 BASIC24.73■■□□□ 1.55
TCRBV3S1A0A5B6 CHMP4B-201ENST00000217402 1646 ntAPPRIS P1 TSL 1 (best) BASIC24.73■■□□□ 1.55
TCRBV3S1A0A5B6 RSG1-201ENST00000375599 1545 ntAPPRIS P1 TSL 1 (best) BASIC24.73■■□□□ 1.55
TCRBV3S1A0A5B6 CYB5R3-201ENST00000352397 2124 ntAPPRIS P1 TSL 1 (best) BASIC24.72■■□□□ 1.55
TCRBV3S1A0A5B6 RHEB-201ENST00000262187 2075 ntAPPRIS P1 TSL 1 (best) BASIC24.72■■□□□ 1.55
TCRBV3S1A0A5B6 CPNE1-202ENST00000352393 2147 ntAPPRIS P1 TSL 1 (best) BASIC24.71■■□□□ 1.55
TCRBV3S1A0A5B6 SDCCAG3-201ENST00000298537 2314 ntTSL 1 (best) BASIC24.7■■□□□ 1.55
TCRBV3S1A0A5B6 RCAN1-201ENST00000313806 2490 ntTSL 1 (best) BASIC24.7■■□□□ 1.54
TCRBV3S1A0A5B6 TLE6-201ENST00000246112 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC24.7■■□□□ 1.54
TCRBV3S1A0A5B6 HDAC3-201ENST00000305264 1959 ntAPPRIS P1 TSL 1 (best) BASIC24.69■■□□□ 1.54
TCRBV3S1A0A5B6 VIPR2-203ENST00000402066 1926 ntAPPRIS ALT2 TSL 5 BASIC24.69■■□□□ 1.54
TCRBV3S1A0A5B6 ARTN-203ENST00000414809 1943 ntAPPRIS P4 TSL 3 BASIC24.69■■□□□ 1.54
TCRBV3S1A0A5B6 AC006077.2-201ENST00000623591 457 ntBASIC24.69■■□□□ 1.54
TCRBV3S1A0A5B6 RAB40C-204ENST00000538492 2569 ntAPPRIS P1 TSL 2 BASIC24.69■■□□□ 1.54
TCRBV3S1A0A5B6 ZDHHC23-206ENST00000498275 2055 ntAPPRIS ALT2 TSL 2 BASIC24.68■■□□□ 1.54
TCRBV3S1A0A5B6 SLC16A3-214ENST00000582743 2002 ntAPPRIS P1 TSL 1 (best) BASIC24.67■■□□□ 1.54
TCRBV3S1A0A5B6 KANSL1L-207ENST00000452086 2334 ntTSL 1 (best) BASIC24.66■■□□□ 1.54
TCRBV3S1A0A5B6 CAMKK1-201ENST00000158166 2459 ntTSL 1 (best) BASIC24.66■■□□□ 1.54
TCRBV3S1A0A5B6 EBPL-203ENST00000378270 579 ntTSL 2 BASIC24.65■■□□□ 1.54
TCRBV3S1A0A5B6 ANKS1B-202ENST00000333732 1675 ntTSL 2 BASIC24.65■■□□□ 1.54
TCRBV3S1A0A5B6 FTCD-201ENST00000291670 1905 ntAPPRIS P1 TSL 1 (best) BASIC24.64■■□□□ 1.53
TCRBV3S1A0A5B6 AC005524.1-203ENST00000586528 451 ntTSL 3 BASIC24.63■■□□□ 1.53
TCRBV3S1A0A5B6 CARS2-201ENST00000257347 1879 ntAPPRIS P1 TSL 1 (best) BASIC24.63■■□□□ 1.53
TCRBV3S1A0A5B6 AC135731.1-201ENST00000569415 2548 ntBASIC24.63■■□□□ 1.53
TCRBV3S1A0A5B6 GSTZ1-201ENST00000216465 1338 ntAPPRIS P2 TSL 1 (best) BASIC24.62■■□□□ 1.53
TCRBV3S1A0A5B6 CHST14-202ENST00000559991 1968 ntTSL 5 BASIC24.62■■□□□ 1.53
TCRBV3S1A0A5B6 PLEKHG6-206ENST00000536531 1683 ntTSL 1 (best) BASIC24.62■■□□□ 1.53
TCRBV3S1A0A5B6 PSMG1-201ENST00000331573 2154 ntAPPRIS P1 TSL 1 (best) BASIC24.61■■□□□ 1.53
TCRBV3S1A0A5B6 FRAT2-201ENST00000371019 2213 ntAPPRIS P1 BASIC24.61■■□□□ 1.53
TCRBV3S1A0A5B6 EVC-203ENST00000509451 1960 ntTSL 1 (best) BASIC24.61■■□□□ 1.53
TCRBV3S1A0A5B6 FAM220A-206ENST00000616824 2211 ntTSL 1 (best) BASIC24.59■■□□□ 1.53
TCRBV3S1A0A5B6 TMEM185A-207ENST00000600449 2840 ntAPPRIS P1 TSL 1 (best) BASIC24.58■■□□□ 1.53
TCRBV3S1A0A5B6 ABHD17A-202ENST00000292577 1757 ntAPPRIS P1 TSL 1 (best) BASIC24.58■■□□□ 1.53
TCRBV3S1A0A5B6 RHOQ-201ENST00000238738 2975 ntAPPRIS P1 TSL 1 (best) BASIC24.58■■□□□ 1.53
TCRBV3S1A0A5B6 XKR6-201ENST00000297303 1550 ntTSL 1 (best) BASIC24.58■■□□□ 1.52
TCRBV3S1A0A5B6 NXPH3-201ENST00000328741 2179 ntAPPRIS P1 TSL 1 (best) BASIC24.57■■□□□ 1.52
TCRBV3S1A0A5B6 TMEM200C-201ENST00000383490 1920 ntAPPRIS P1 BASIC24.57■■□□□ 1.52
TCRBV3S1A0A5B6 SLC25A6-201ENST00000381401 2062 ntAPPRIS P1 TSL 1 (best) BASIC24.57■■□□□ 1.52
TCRBV3S1A0A5B6 NPTXR-202ENST00000640136 1503 ntAPPRIS P2 TSL 1 (best) BASIC24.56■■□□□ 1.52
TCRBV3S1A0A5B6 POU3F3-201ENST00000361360 3064 ntAPPRIS P1 BASIC24.56■■□□□ 1.52
TCRBV3S1A0A5B6 PCYT2-206ENST00000571105 1628 ntTSL 5 BASIC24.56■■□□□ 1.52
TCRBV3S1A0A5B6 BTBD7-201ENST00000298896 2621 ntTSL 1 (best) BASIC24.55■■□□□ 1.52
TCRBV3S1A0A5B6 CATIP-201ENST00000289388 1323 ntAPPRIS P1 TSL 1 (best) BASIC24.55■■□□□ 1.52
TCRBV3S1A0A5B6 HDGFL1-201ENST00000510882 2174 ntAPPRIS P1 BASIC24.53■■□□□ 1.52
TCRBV3S1A0A5B6 MKNK2-202ENST00000309340 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC24.53■■□□□ 1.52
TCRBV3S1A0A5B6 HNRNPAB-204ENST00000504898 1785 ntAPPRIS P4 TSL 1 (best) BASIC24.53■■□□□ 1.52
TCRBV3S1A0A5B6 GLRB-203ENST00000509282 1757 ntAPPRIS P1 TSL 1 (best) BASIC24.53■■□□□ 1.52
TCRBV3S1A0A5B6 DNAJC21-201ENST00000342382 2309 ntAPPRIS P1 TSL 1 (best) BASIC24.53■■□□□ 1.52
TCRBV3S1A0A5B6 REXO4-202ENST00000371942 2360 ntAPPRIS P1 TSL 1 (best) BASIC24.52■■□□□ 1.52
TCRBV3S1A0A5B6 TAZ-205ENST00000475699 1862 ntTSL 1 (best) BASIC24.52■■□□□ 1.52
TCRBV3S1A0A5B6 PLBD2-202ENST00000545182 2321 ntTSL 2 BASIC24.52■■□□□ 1.52
TCRBV3S1A0A5B6 C17orf97-201ENST00000360127 1839 ntAPPRIS P2 TSL 1 (best) BASIC24.51■■□□□ 1.51
TCRBV3S1A0A5B6 BX255925.1-201ENST00000566954 1854 ntBASIC24.51■■□□□ 1.51
TCRBV3S1A0A5B6 CDH23-208ENST00000461841 2000 ntTSL 5 BASIC24.51■■□□□ 1.51
TCRBV3S1A0A5B6 PELI3-203ENST00000524466 1671 ntTSL 1 (best) BASIC24.51■■□□□ 1.51
TCRBV3S1A0A5B6 TAZ-213ENST00000601016 1889 ntTSL 1 (best) BASIC24.51■■□□□ 1.51
TCRBV3S1A0A5B6 NDEL1-202ENST00000380025 2181 ntTSL 5 BASIC24.5■■□□□ 1.51
TCRBV3S1A0A5B6 SLC9A3R2-201ENST00000424542 2194 ntAPPRIS P1 TSL 1 (best) BASIC24.5■■□□□ 1.51
TCRBV3S1A0A5B6 GNAS-211ENST00000371095 1931 ntAPPRIS ALT1 TSL 1 (best) BASIC24.5■■□□□ 1.51
TCRBV3S1A0A5B6 FSD1L-208ENST00000495708 1906 ntTSL 1 (best) BASIC24.5■■□□□ 1.51
TCRBV3S1A0A5B6 RASSF5-204ENST00000580449 1932 ntTSL 1 (best) BASIC24.5■■□□□ 1.51
TCRBV3S1A0A5B6 MXD3-203ENST00000439742 1483 ntAPPRIS P1 TSL 1 (best) BASIC24.5■■□□□ 1.51
TCRBV3S1A0A5B6 RNF150-204ENST00000507500 1530 ntTSL 1 (best) BASIC24.5■■□□□ 1.51
TCRBV3S1A0A5B6 MARCH11-201ENST00000332432 1741 ntAPPRIS P1 TSL 5 BASIC24.49■■□□□ 1.51
TCRBV3S1A0A5B6 DYNLL1-207ENST00000549989 719 ntAPPRIS P1 TSL 1 (best) BASIC24.49■■□□□ 1.51
TCRBV3S1A0A5B6 DYNLL1-208ENST00000550178 581 ntBASIC24.49■■□□□ 1.51
TCRBV3S1A0A5B6 GAL3ST1-204ENST00000402369 1712 ntAPPRIS P1 TSL 3 BASIC24.49■■□□□ 1.51
TCRBV3S1A0A5B6 C11orf80-218ENST00000540737 1786 ntAPPRIS ALT2 TSL 2 BASIC24.49■■□□□ 1.51
TCRBV3S1A0A5B6 RTN2-202ENST00000344680 2063 ntAPPRIS P1 TSL 1 (best) BASIC24.49■■□□□ 1.51
TCRBV3S1A0A5B6 RAB3IL1-202ENST00000394836 2284 ntAPPRIS P1 TSL 1 (best) BASIC24.49■■□□□ 1.51
TCRBV3S1A0A5B6 DEAF1-201ENST00000382409 2500 ntAPPRIS P1 TSL 1 (best) BASIC24.49■■□□□ 1.51
TCRBV3S1A0A5B6 FAM89B-201ENST00000316409 1409 ntTSL 1 (best) BASIC24.48■■□□□ 1.51
TCRBV3S1A0A5B6 AJAP1-201ENST00000378190 2383 ntAPPRIS P1 TSL 5 BASIC24.48■■□□□ 1.51
TCRBV3S1A0A5B6 NREP-202ENST00000379671 2581 ntAPPRIS P1 TSL 1 (best) BASIC24.48■■□□□ 1.51
TCRBV3S1A0A5B6 OTUD5-202ENST00000376488 2692 ntAPPRIS ALT1 TSL 1 (best) BASIC24.48■■□□□ 1.51
TCRBV3S1A0A5B6 ABL2-203ENST00000392043 2140 ntTSL 1 (best) BASIC24.47■■□□□ 1.51
TCRBV3S1A0A5B6 HOMER2-202ENST00000450735 1950 ntAPPRIS ALT2 TSL 1 (best) BASIC24.47■■□□□ 1.51
TCRBV3S1A0A5B6 RPUSD1-207ENST00000565809 1918 ntTSL 2 BASIC24.47■■□□□ 1.51
TCRBV3S1A0A5B6 SLC16A8-201ENST00000320521 1878 ntAPPRIS P1 TSL 1 (best) BASIC24.47■■□□□ 1.51
TCRBV3S1A0A5B6 CGREF1-204ENST00000402550 1575 ntTSL 2 BASIC24.46■■□□□ 1.51
TCRBV3S1A0A5B6 SLC9A3R2-202ENST00000432365 1564 ntTSL 1 (best) BASIC24.46■■□□□ 1.51
TCRBV3S1A0A5B6 DEDD-212ENST00000545495 2329 ntAPPRIS P1 TSL 3 BASIC24.46■■□□□ 1.51
TCRBV3S1A0A5B6 NOP53-201ENST00000246802 1528 ntAPPRIS P1 TSL 1 (best) BASIC24.46■■□□□ 1.51
TCRBV3S1A0A5B6 BMP8A-201ENST00000331593 1692 ntAPPRIS P1 TSL 1 (best) BASIC24.46■■□□□ 1.51
TCRBV3S1A0A5B6 GNAS-207ENST00000354359 1975 ntTSL 1 (best) BASIC24.45■■□□□ 1.51
Retrieved 100 of 98,524 protein–RNA pairs in 17.9 ms