Protein–RNA interactions for Protein: A2RU48

SMCO3, Single-pass membrane and coiled-coil domain-containing protein 3, humanhuman

Predictions only

Length 225 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMCO3A2RU48 HMGXB3-206ENST00000613459 5567 ntAPPRIS ALT2 TSL 5 BASIC16.84■□□□□ 0.29
SMCO3A2RU48 BMP8B-201ENST00000372827 4822 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
SMCO3A2RU48 PRELID1-203ENST00000503216 1171 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
SMCO3A2RU48 KCTD15-202ENST00000430256 2555 ntAPPRIS P1 TSL 2 BASIC16.84■□□□□ 0.29
SMCO3A2RU48 ECEL1-201ENST00000304546 2865 ntAPPRIS P3 TSL 1 (best) BASIC16.84■□□□□ 0.29
SMCO3A2RU48 HLA-C-203ENST00000383329 1554 ntAPPRIS ALT2 BASIC16.84■□□□□ 0.29
SMCO3A2RU48 FARSA-201ENST00000314606 1814 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
SMCO3A2RU48 RASSF1-203ENST00000359365 1923 ntAPPRIS ALT1 TSL 1 (best) BASIC16.84■□□□□ 0.29
SMCO3A2RU48 ZNF821-202ENST00000425432 2000 ntAPPRIS P1 TSL 5 BASIC16.84■□□□□ 0.29
SMCO3A2RU48 PKMYT1-201ENST00000262300 2171 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
SMCO3A2RU48 CBWD3-201ENST00000360171 2165 ntAPPRIS P2 TSL 1 (best) BASIC16.84■□□□□ 0.29
SMCO3A2RU48 TMEM198-202ENST00000373883 2218 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
SMCO3A2RU48 ARRDC2-201ENST00000222250 2503 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
SMCO3A2RU48 CERCAM-202ENST00000372842 5201 ntAPPRIS ALT2 TSL 5 BASIC16.83■□□□□ 0.29
SMCO3A2RU48 PACS2-203ENST00000447393 6365 ntTSL 1 (best) BASIC16.83■□□□□ 0.29
SMCO3A2RU48 UBE2QL1-201ENST00000399816 4317 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.29
SMCO3A2RU48 FBXL7-202ENST00000504595 4562 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.29
SMCO3A2RU48 FAM124A-202ENST00000322475 4761 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.29
SMCO3A2RU48 NID1-202ENST00000366595 5412 ntTSL 1 (best) BASIC16.83■□□□□ 0.29
SMCO3A2RU48 SMPD2-201ENST00000258052 1645 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
SMCO3A2RU48 PDLIM3-203ENST00000284771 1672 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
SMCO3A2RU48 EIF4E3-201ENST00000295612 2764 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
SMCO3A2RU48 GMPPB-202ENST00000308388 1582 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
SMCO3A2RU48 RMI2-201ENST00000312499 1457 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
SMCO3A2RU48 MVB12A-201ENST00000317040 2223 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
SMCO3A2RU48 ALDH6A1-201ENST00000350259 1869 ntAPPRIS ALT2 TSL 2 BASIC16.83■□□□□ 0.28
SMCO3A2RU48 ERLEC1-203ENST00000405123 1756 ntTSL 5 BASIC16.83■□□□□ 0.28
SMCO3A2RU48 PRR16-202ENST00000407149 1747 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
SMCO3A2RU48 CDK18-203ENST00000429964 1648 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
SMCO3A2RU48 RBM38-205ENST00000440234 686 ntTSL 2 BASIC16.83■□□□□ 0.28
SMCO3A2RU48 MFSD7-209ENST00000515118 1556 ntTSL 5 BASIC16.83■□□□□ 0.28
SMCO3A2RU48 TMEM218-209ENST00000529583 848 ntAPPRIS P1 TSL 3 BASIC16.83■□□□□ 0.28
SMCO3A2RU48 OAS3-205ENST00000548514 1392 ntTSL 2 BASIC16.83■□□□□ 0.28
SMCO3A2RU48 NNT-AS1-206ENST00000606697 1945 ntTSL 2 BASIC16.83■□□□□ 0.28
SMCO3A2RU48 NR2F1-AS1-210ENST00000606739 1431 ntTSL 2 BASIC16.83■□□□□ 0.28
SMCO3A2RU48 TPCN2-208ENST00000637342 2856 ntTSL 5 BASIC16.83■□□□□ 0.28
SMCO3A2RU48 SMCHD1-201ENST00000320876 8821 ntAPPRIS P1 TSL 5 BASIC16.83■□□□□ 0.28
SMCO3A2RU48 ANKLE1-204ENST00000594072 2294 ntTSL 5 BASIC16.82■□□□□ 0.28
SMCO3A2RU48 INPP1-202ENST00000392329 2162 ntAPPRIS P1 TSL 5 BASIC16.82■□□□□ 0.28
SMCO3A2RU48 EVX2-201ENST00000308618 4203 ntAPPRIS P1 TSL 5 BASIC16.82■□□□□ 0.28
SMCO3A2RU48 AL034417.2-201ENST00000445300 2044 ntTSL 2 BASIC16.82■□□□□ 0.28
SMCO3A2RU48 PTCH1-201ENST00000331920 8057 ntAPPRIS P1 TSL 5 BASIC16.82■□□□□ 0.28
SMCO3A2RU48 ALX3-201ENST00000369792 1859 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
SMCO3A2RU48 EFR3A-201ENST00000254624 5438 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
SMCO3A2RU48 MEIS3-202ENST00000441740 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
SMCO3A2RU48 RNF166-202ENST00000537718 1525 ntTSL 2 BASIC16.82■□□□□ 0.28
SMCO3A2RU48 GRM5-201ENST00000305432 4475 ntAPPRIS P3 TSL 1 (best) BASIC16.82■□□□□ 0.28
SMCO3A2RU48 PCSK5-201ENST00000376752 5756 ntAPPRIS P3 TSL 1 (best) BASIC16.82■□□□□ 0.28
SMCO3A2RU48 GFRA4-201ENST00000290417 1427 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
SMCO3A2RU48 ARRDC1-AS1-201ENST00000371417 1409 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
SMCO3A2RU48 FAM107A-203ENST00000447756 1432 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
SMCO3A2RU48 RDX-202ENST00000405097 2761 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
SMCO3A2RU48 DISC1-215ENST00000602281 2761 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
SMCO3A2RU48 CLDN15-201ENST00000308344 1370 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
SMCO3A2RU48 HAUS7-202ENST00000370211 1363 ntAPPRIS P2 TSL 1 (best) BASIC16.82■□□□□ 0.28
SMCO3A2RU48 PLEKHF1-204ENST00000592810 1357 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
SMCO3A2RU48 TST-201ENST00000249042 1211 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
SMCO3A2RU48 AC239859.2-201ENST00000444165 318 ntBASIC16.82■□□□□ 0.28
SMCO3A2RU48 AC084116.4-201ENST00000524320 484 ntTSL 2 BASIC16.82■□□□□ 0.28
SMCO3A2RU48 PTPA-223ENST00000452489 2526 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
SMCO3A2RU48 ALDOA-221ENST00000566897 2448 ntAPPRIS P2 TSL 2 BASIC16.82■□□□□ 0.28
SMCO3A2RU48 DVL1-204ENST00000610709 2268 ntTSL 2 BASIC16.82■□□□□ 0.28
SMCO3A2RU48 AP000679.1-202ENST00000319763 2081 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
SMCO3A2RU48 FOXD4L3-201ENST00000342833 2039 ntAPPRIS P1 BASIC16.82■□□□□ 0.28
SMCO3A2RU48 ZNF773-204ENST00000598770 2019 ntAPPRIS ALT2 TSL 2 BASIC16.82■□□□□ 0.28
SMCO3A2RU48 CPAMD8-203ENST00000443236 5992 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
SMCO3A2RU48 PBX1-222ENST00000627490 1769 ntTSL 2 BASIC16.82■□□□□ 0.28
SMCO3A2RU48 SOCS7-201ENST00000612932 7857 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
SMCO3A2RU48 SPATS2L-204ENST00000409140 2463 ntAPPRIS P1 TSL 2 BASIC16.81■□□□□ 0.28
SMCO3A2RU48 ACSL1-205ENST00000504900 1583 ntTSL 5 BASIC16.81■□□□□ 0.28
SMCO3A2RU48 TBX18-202ENST00000369663 6245 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
SMCO3A2RU48 CDHR5-201ENST00000349570 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
SMCO3A2RU48 CENPS-CORT-201ENST00000400900 1469 ntTSL 2 BASIC16.81■□□□□ 0.28
SMCO3A2RU48 RABL2B-206ENST00000395598 2169 ntAPPRIS P3 TSL 1 (best) BASIC16.81■□□□□ 0.28
SMCO3A2RU48 MATN4-204ENST00000372756 2077 ntAPPRIS P2 TSL 1 (best) BASIC16.81■□□□□ 0.28
SMCO3A2RU48 ZNF513-202ENST00000407879 2077 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
SMCO3A2RU48 TMUB1-201ENST00000297533 1353 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
SMCO3A2RU48 LYNX1-204ENST00000614491 4708 ntAPPRIS P1 TSL 2 BASIC16.81■□□□□ 0.28
SMCO3A2RU48 GRINA-201ENST00000313269 1968 ntAPPRIS P1 TSL 5 BASIC16.81■□□□□ 0.28
SMCO3A2RU48 TXNRD3-204ENST00000640433 1932 ntAPPRIS P4 TSL 1 (best) BASIC16.81■□□□□ 0.28
SMCO3A2RU48 LSM4-201ENST00000252816 986 ntTSL 2 BASIC16.81■□□□□ 0.28
SMCO3A2RU48 MRPL23-202ENST00000381519 643 ntAPPRIS P1 TSL 3 BASIC16.81■□□□□ 0.28
SMCO3A2RU48 MRPL23-205ENST00000397298 736 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
SMCO3A2RU48 AC006455.2-201ENST00000429931 906 ntBASIC16.81■□□□□ 0.28
SMCO3A2RU48 NKIRAS2-209ENST00000479407 992 ntTSL 3 BASIC16.81■□□□□ 0.28
SMCO3A2RU48 PHF20L1-209ENST00000395386 6237 ntAPPRIS P1 TSL 5 BASIC16.81■□□□□ 0.28
SMCO3A2RU48 PTGER2-201ENST00000245457 2383 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
SMCO3A2RU48 HSD3B7-202ENST00000297679 2172 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
SMCO3A2RU48 FAM129C-212ENST00000601861 2180 ntAPPRIS ALT2 TSL 2 BASIC16.81■□□□□ 0.28
SMCO3A2RU48 ARHGAP26-202ENST00000378004 9200 ntAPPRIS ALT1 TSL 1 (best) BASIC16.81■□□□□ 0.28
SMCO3A2RU48 NFIC-211ENST00000641145 8399 ntBASIC16.81■□□□□ 0.28
SMCO3A2RU48 GTSE1-AS1-202ENST00000623117 1518 ntBASIC16.8■□□□□ 0.28
SMCO3A2RU48 CAMKK2-208ENST00000412367 2006 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
SMCO3A2RU48 BHLHE22-201ENST00000321870 3262 ntAPPRIS P1 BASIC16.8■□□□□ 0.28
SMCO3A2RU48 LINC01547-202ENST00000397841 2303 ntTSL 2 BASIC16.8■□□□□ 0.28
SMCO3A2RU48 CYP27A1-201ENST00000258415 2286 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
SMCO3A2RU48 ZNF554-201ENST00000317243 2736 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
SMCO3A2RU48 AL049796.1-201ENST00000565336 1766 ntBASIC16.8■□□□□ 0.28
SMCO3A2RU48 FAM120B-204ENST00000625626 1794 ntAPPRIS ALT2 TSL 2 BASIC16.8■□□□□ 0.28
SMCO3A2RU48 BAD-203ENST00000394532 1157 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 85.5 ms