RNA–Protein interactions for RNA: ENST00000320876.10

SMCHD1-201, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

APPRIS P1 TSL 5 BASIC

Gene SMCHD1, Length 8,821 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-201ENST00000320876 DCAF8L2P0C7V8 631 aa27.71■■■□□ 2.03
SMCHD1-201ENST00000320876 PELP1Q8IZL8 1130 aaKnown RBP27.62■■■□□ 2.01
SMCHD1-201ENST00000320876 SUPT5HO00267 1087 aaKnown RBP26.69■■□□□ 1.86
SMCHD1-201ENST00000320876 ERICH6Q7L0X2 663 aa26.31■■□□□ 1.8
SMCHD1-201ENST00000320876 MYT1Q01538 1121 aa26.3■■□□□ 1.8
SMCHD1-201ENST00000320876 CCER1Q8TC90 406 aaPredicted RBP26.27■■□□□ 1.8
SMCHD1-201ENST00000320876 APLP2Q06481 763 aa26.16■■□□□ 1.78
SMCHD1-201ENST00000320876 CENPBP07199 599 aaPredicted RBP26.11■■□□□ 1.77
SMCHD1-201ENST00000320876 EHMT2Q96KQ7 1210 aa26.03■■□□□ 1.76
SMCHD1-201ENST00000320876 SHROOM4Q9ULL8 1493 aa25.99■■□□□ 1.75
SMCHD1-201ENST00000320876 NISCHQ9Y2I1 1504 aa25.9■■□□□ 1.74
SMCHD1-201ENST00000320876 ZEB1P37275 1124 aaPredicted RBP25.78■■□□□ 1.72
SMCHD1-201ENST00000320876 PCGF6Q9BYE7 350 aa25.69■■□□□ 1.7
SMCHD1-201ENST00000320876 FAM9AQ8IZU1 332 aaPredicted RBP25.64■■□□□ 1.7
SMCHD1-201ENST00000320876 NEFLP07196 543 aa25.55■■□□□ 1.68
SMCHD1-201ENST00000320876 TTBK1Q5TCY1 1321 aaPredicted RBP25.36■■□□□ 1.65
SMCHD1-201ENST00000320876 YTHDC1Q96MU7 727 aaKnown RBP25.14■■□□□ 1.61
SMCHD1-201ENST00000320876 DAXXQ9UER7 740 aaPredicted RBP25.08■■□□□ 1.61
SMCHD1-201ENST00000320876 RANGAP1P46060 587 aaPredicted RBP24.83■■□□□ 1.57
SMCHD1-201ENST00000320876 TRIM41Q8WV44 630 aa24.82■■□□□ 1.56
SMCHD1-201ENST00000320876 ATP1B4Q9UN42 357 aaPredicted RBP24.78■■□□□ 1.56
SMCHD1-201ENST00000320876 UBTFP17480 764 aaKnown RBP24.68■■□□□ 1.54
SMCHD1-201ENST00000320876 RTL5Q5HYW3 569 aaPredicted RBP24.56■■□□□ 1.52
SMCHD1-201ENST00000320876 TRIM26Q12899 539 aaPredicted RBP24.53■■□□□ 1.52
SMCHD1-201ENST00000320876 ZNF316A6NFI3 1004 aaPredicted RBP24.47■■□□□ 1.51
SMCHD1-201ENST00000320876 HRCP23327 699 aa24.4■■□□□ 1.5
SMCHD1-201ENST00000320876 POLR3GLQ9BT43 218 aa24.16■■□□□ 1.46
SMCHD1-201ENST00000320876 PPARGC1BQ86YN6 1023 aaKnown RBP24.15■■□□□ 1.46
SMCHD1-201ENST00000320876 CLSPNQ9HAW4 1339 aa24.14■■□□□ 1.46
SMCHD1-201ENST00000320876 DIEXFQ68CQ4 756 aaKnown RBP23.99■■□□□ 1.43
SMCHD1-201ENST00000320876 ITGAEP38570 1179 aa23.95■■□□□ 1.42
SMCHD1-201ENST00000320876 MYT1LQ9UL68 1186 aa23.85■■□□□ 1.41
SMCHD1-201ENST00000320876 CNGB1Q14028 1251 aaPredicted RBP23.8■■□□□ 1.4
SMCHD1-201ENST00000320876 CDK11AQ9UQ88 783 aaPredicted RBP23.78■■□□□ 1.4
SMCHD1-201ENST00000320876 SLC4A1APQ9BWU0 796 aaKnown RBP23.78■■□□□ 1.4
SMCHD1-201ENST00000320876 HNRNPUL2Q1KMD3 747 aaKnown RBP23.77■■□□□ 1.4
SMCHD1-201ENST00000320876 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP23.74■■□□□ 1.39
SMCHD1-201ENST00000320876 GTF3C3Q9Y5Q9 886 aa23.65■■□□□ 1.38
SMCHD1-201ENST00000320876 ZBTB47Q9UFB7 747 aaPredicted RBP23.63■■□□□ 1.37
SMCHD1-201ENST00000320876 BCANQ96GW7 911 aa23.55■■□□□ 1.36
SMCHD1-201ENST00000320876 ANP32AP39687 249 aaKnown RBP23.54■■□□□ 1.36
SMCHD1-201ENST00000320876 GLIPR1L2Q4G1C9 344 aa23.54■■□□□ 1.36
SMCHD1-201ENST00000320876 ANP32CO43423 234 aa23.52■■□□□ 1.36
SMCHD1-201ENST00000320876 LOC105371045A0A1W2PR82 267 aa23.5■■□□□ 1.35
SMCHD1-201ENST00000320876 CHIC1Q5VXU3 224 aa23.46■■□□□ 1.35
SMCHD1-201ENST00000320876 ANP32BQ92688 251 aaKnown RBP23.44■■□□□ 1.34
SMCHD1-201ENST00000320876 CANXP27824 592 aaKnown RBP23.4■■□□□ 1.34
SMCHD1-201ENST00000320876 EIF5BO60841 1220 aaKnown RBP23.36■■□□□ 1.33
SMCHD1-201ENST00000320876 FAM50AQ14320 339 aaKnown RBP23.35■■□□□ 1.33
SMCHD1-201ENST00000320876 NEUROD1Q13562 356 aa23.27■■□□□ 1.32
SMCHD1-201ENST00000320876 TRIM52Q96A61 297 aa23.26■■□□□ 1.31
SMCHD1-201ENST00000320876 ACIN1Q9UKV3 1341 aaKnown RBP23.21■■□□□ 1.31
SMCHD1-201ENST00000320876 NEFMP07197 916 aa23.16■■□□□ 1.3
SMCHD1-201ENST00000320876 HSP90AA1P07900 732 aaKnown RBP23.14■■□□□ 1.29
SMCHD1-201ENST00000320876 NPM2Q86SE8 214 aaKnown RBP23.11■■□□□ 1.29
SMCHD1-201ENST00000320876 ZNF326Q5BKZ1 582 aaKnown RBP23.09■■□□□ 1.29
SMCHD1-201ENST00000320876 UPF2Q9HAU5 1272 aaKnown RBP23.09■■□□□ 1.29
SMCHD1-201ENST00000320876 BCL11AQ9H165 835 aa23.06■■□□□ 1.28
SMCHD1-201ENST00000320876 SLC24A1O60721 1099 aa23.05■■□□□ 1.28
SMCHD1-201ENST00000320876 FKBP8Q14318 412 aa22.86■■□□□ 1.25
SMCHD1-201ENST00000320876 NBR1Q14596 966 aa22.82■■□□□ 1.24
SMCHD1-201ENST00000320876 GOLGA6L2Q8N9W4 650 aaPredicted RBP22.67■■□□□ 1.22
SMCHD1-201ENST00000320876 TNNT2P45379 298 aaPredicted RBP22.66■■□□□ 1.22
SMCHD1-201ENST00000320876 HNRNPUQ00839 825 aaKnown RBP eCLIP22.66■■□□□ 1.22
SMCHD1-201ENST00000320876 CCDC136Q96JN2 1154 aa22.66■■□□□ 1.22
SMCHD1-201ENST00000320876 TONSLQ96HA7 1378 aa22.64■■□□□ 1.21
SMCHD1-201ENST00000320876 ARXQ96QS3 562 aa22.63■■□□□ 1.21
SMCHD1-201ENST00000320876 ANP32EQ9BTT0 268 aa22.59■■□□□ 1.21
SMCHD1-201ENST00000320876 TRIM44Q96DX7 344 aaPredicted RBP22.57■■□□□ 1.2
SMCHD1-201ENST00000320876 CDK11BP21127 795 aaKnown RBP22.57■■□□□ 1.2
SMCHD1-201ENST00000320876 DCAF1Q9Y4B6 1507 aa22.53■■□□□ 1.2
SMCHD1-201ENST00000320876 DDRGK1Q96HY6 314 aa22.53■■□□□ 1.2
SMCHD1-201ENST00000320876 BECN1Q14457 450 aa22.52■■□□□ 1.2
SMCHD1-201ENST00000320876 FAM9BQ8IZU0 186 aa22.5■■□□□ 1.19
SMCHD1-201ENST00000320876 MYH16Q9H6N6 1097 aa22.46■■□□□ 1.19
SMCHD1-201ENST00000320876 TMC1Q8TDI8 760 aa22.43■■□□□ 1.18
SMCHD1-201ENST00000320876 GOLGA6L22H0YM25 854 aa22.43■■□□□ 1.18
SMCHD1-201ENST00000320876 NCLP19338 710 aaKnown RBP22.4■■□□□ 1.18
SMCHD1-201ENST00000320876 WDR43Q15061 677 aaKnown RBP eCLIP22.38■■□□□ 1.174e-6■□□□□ 9.3
SMCHD1-201ENST00000320876 DDX10Q13206 875 aaKnown RBP22.36■■□□□ 1.17
SMCHD1-201ENST00000320876 CCDC180Q9P1Z9 1646 aa22.32■■□□□ 1.16
SMCHD1-201ENST00000320876 ERICH6BQ5W0A0 696 aa22.32■■□□□ 1.16
SMCHD1-201ENST00000320876 SCAF1Q9H7N4 1312 aaKnown RBP22.31■■□□□ 1.16
SMCHD1-201ENST00000320876 FBLN2P98095 1184 aa22.3■■□□□ 1.16
SMCHD1-201ENST00000320876 ZNF777Q9ULD5 760 aaPredicted RBP22.28■■□□□ 1.16
SMCHD1-201ENST00000320876 SALL2Q9Y467 1007 aaPredicted RBP22.28■■□□□ 1.16
SMCHD1-201ENST00000320876 PTMAP06454 111 aaKnown RBP22.26■■□□□ 1.15
SMCHD1-201ENST00000320876 MRS2Q9HD23 443 aa22.26■■□□□ 1.15
SMCHD1-201ENST00000320876 DNTTIP2Q5QJE6 756 aaKnown RBP22.25■■□□□ 1.15
SMCHD1-201ENST00000320876 ZRSR1Q15695 479 aaKnown RBP22.25■■□□□ 1.15
SMCHD1-201ENST00000320876 ESF1Q9H501 851 aaKnown RBP22.22■■□□□ 1.15
SMCHD1-201ENST00000320876 NAP1L5Q96NT1 182 aaPredicted RBP22.19■■□□□ 1.14
SMCHD1-201ENST00000320876 CASC1Q6TDU7 716 aa22.19■■□□□ 1.14
SMCHD1-201ENST00000320876 P3H3Q8IVL6 736 aa22.19■■□□□ 1.14
SMCHD1-201ENST00000320876 STAG3Q9UJ98 1225 aa22.19■■□□□ 1.14
SMCHD1-201ENST00000320876 CSRNP3Q8WYN3 585 aa22.16■■□□□ 1.14
SMCHD1-201ENST00000320876 ARID3CA6NKF2 412 aa22.16■■□□□ 1.14
SMCHD1-201ENST00000320876 PPM1GO15355 546 aaPredicted RBP22.15■■□□□ 1.14
SMCHD1-201ENST00000320876 IRX6P78412 446 aaPredicted RBP22.13■■□□□ 1.13
SMCHD1-201ENST00000320876 GOLGA6L6A8MZA4 724 aa22.1■■□□□ 1.13
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms