RNA–Protein interactions for RNA: ENST00000613459.4

HMGXB3-206, Transcript of HMG-box containing 3, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene HMGXB3, Length 5,567 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGXB3-206ENST00000613459 DCAF8L2P0C7V8 631 aa29.31■■■□□ 2.28
HMGXB3-206ENST00000613459 NISCHQ9Y2I1 1504 aa28.18■■■□□ 2.1
HMGXB3-206ENST00000613459 SUPT5HO00267 1087 aaKnown RBP28.02■■■□□ 2.08
HMGXB3-206ENST00000613459 PELP1Q8IZL8 1130 aaKnown RBP27.95■■■□□ 2.07
HMGXB3-206ENST00000613459 SHROOM4Q9ULL8 1493 aa27.37■■□□□ 1.97
HMGXB3-206ENST00000613459 APLP2Q06481 763 aa27.24■■□□□ 1.95
HMGXB3-206ENST00000613459 FAM9AQ8IZU1 332 aaPredicted RBP26.94■■□□□ 1.9
HMGXB3-206ENST00000613459 EHMT2Q96KQ7 1210 aa26.88■■□□□ 1.89
HMGXB3-206ENST00000613459 ERICH6Q7L0X2 663 aa26.7■■□□□ 1.86
HMGXB3-206ENST00000613459 CENPBP07199 599 aaPredicted RBP26.69■■□□□ 1.86
HMGXB3-206ENST00000613459 ZEB1P37275 1124 aaPredicted RBP26.68■■□□□ 1.86
HMGXB3-206ENST00000613459 CCER1Q8TC90 406 aaPredicted RBP26.65■■□□□ 1.86
HMGXB3-206ENST00000613459 MYT1Q01538 1121 aa26.59■■□□□ 1.85
HMGXB3-206ENST00000613459 PCGF6Q9BYE7 350 aa26.48■■□□□ 1.83
HMGXB3-206ENST00000613459 TRIM41Q8WV44 630 aa26.18■■□□□ 1.78
HMGXB3-206ENST00000613459 TTBK1Q5TCY1 1321 aaPredicted RBP26.13■■□□□ 1.77
HMGXB3-206ENST00000613459 NEFLP07196 543 aa26.06■■□□□ 1.76
HMGXB3-206ENST00000613459 UBTFP17480 764 aaKnown RBP25.88■■□□□ 1.73
HMGXB3-206ENST00000613459 ATP1B4Q9UN42 357 aaPredicted RBP25.83■■□□□ 1.73
HMGXB3-206ENST00000613459 RANGAP1P46060 587 aaPredicted RBP25.81■■□□□ 1.72
HMGXB3-206ENST00000613459 HRCP23327 699 aa25.79■■□□□ 1.72
HMGXB3-206ENST00000613459 YTHDC1Q96MU7 727 aaKnown RBP25.72■■□□□ 1.71
HMGXB3-206ENST00000613459 TRIM26Q12899 539 aaPredicted RBP25.55■■□□□ 1.68
HMGXB3-206ENST00000613459 DAXXQ9UER7 740 aaPredicted RBP25.4■■□□□ 1.66
HMGXB3-206ENST00000613459 PPARGC1BQ86YN6 1023 aaKnown RBP25.23■■□□□ 1.63
HMGXB3-206ENST00000613459 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP24.95■■□□□ 1.58
HMGXB3-206ENST00000613459 HNRNPUL2Q1KMD3 747 aaKnown RBP24.95■■□□□ 1.58
HMGXB3-206ENST00000613459 RTL5Q5HYW3 569 aaPredicted RBP24.93■■□□□ 1.58
HMGXB3-206ENST00000613459 MYT1LQ9UL68 1186 aa24.93■■□□□ 1.58
HMGXB3-206ENST00000613459 ITGAEP38570 1179 aa24.91■■□□□ 1.58
HMGXB3-206ENST00000613459 POLR3GLQ9BT43 218 aa24.89■■□□□ 1.57
HMGXB3-206ENST00000613459 CHIC1Q5VXU3 224 aa24.88■■□□□ 1.57
HMGXB3-206ENST00000613459 LOC105371045A0A1W2PR82 267 aa24.81■■□□□ 1.56
HMGXB3-206ENST00000613459 ZNF316A6NFI3 1004 aaPredicted RBP24.8■■□□□ 1.56
HMGXB3-206ENST00000613459 DIEXFQ68CQ4 756 aaKnown RBP24.7■■□□□ 1.54
HMGXB3-206ENST00000613459 CLSPNQ9HAW4 1339 aa24.58■■□□□ 1.53
HMGXB3-206ENST00000613459 GTF3C3Q9Y5Q9 886 aa24.57■■□□□ 1.52
HMGXB3-206ENST00000613459 SLC4A1APQ9BWU0 796 aaKnown RBP24.47■■□□□ 1.51
HMGXB3-206ENST00000613459 CNGB1Q14028 1251 aaPredicted RBP24.45■■□□□ 1.5
HMGXB3-206ENST00000613459 FAM50AQ14320 339 aaKnown RBP24.43■■□□□ 1.5
HMGXB3-206ENST00000613459 TRIM52Q96A61 297 aa24.37■■□□□ 1.49
HMGXB3-206ENST00000613459 CDK11AQ9UQ88 783 aaPredicted RBP24.36■■□□□ 1.49
HMGXB3-206ENST00000613459 ANP32CO43423 234 aa24.34■■□□□ 1.49
HMGXB3-206ENST00000613459 ACIN1Q9UKV3 1341 aaKnown RBP24.33■■□□□ 1.49
HMGXB3-206ENST00000613459 ZBTB47Q9UFB7 747 aaPredicted RBP24.25■■□□□ 1.47
HMGXB3-206ENST00000613459 BCANQ96GW7 911 aa24.21■■□□□ 1.47
HMGXB3-206ENST00000613459 NEUROD1Q13562 356 aa24.18■■□□□ 1.46
HMGXB3-206ENST00000613459 ABCC9O60706 1549 aa24.08■■□□□ 1.44
HMGXB3-206ENST00000613459 SCAF1Q9H7N4 1312 aaKnown RBP24.07■■□□□ 1.44
HMGXB3-206ENST00000613459 PABPN1Q86U42 306 aaKnown RBP eCLIP24.04■■□□□ 1.442e-8■■■■□ 22.7
HMGXB3-206ENST00000613459 NEFMP07197 916 aa24.02■■□□□ 1.44
HMGXB3-206ENST00000613459 ANP32AP39687 249 aaKnown RBP24■■□□□ 1.43
HMGXB3-206ENST00000613459 CANXP27824 592 aaKnown RBP23.98■■□□□ 1.43
HMGXB3-206ENST00000613459 ZNF326Q5BKZ1 582 aaKnown RBP23.96■■□□□ 1.43
HMGXB3-206ENST00000613459 CSRNP3Q8WYN3 585 aa23.84■■□□□ 1.41
HMGXB3-206ENST00000613459 ANP32BQ92688 251 aaKnown RBP23.74■■□□□ 1.39
HMGXB3-206ENST00000613459 FBLN2P98095 1184 aa23.68■■□□□ 1.38
HMGXB3-206ENST00000613459 GLIPR1L2Q4G1C9 344 aa23.68■■□□□ 1.38
HMGXB3-206ENST00000613459 NPM2Q86SE8 214 aaKnown RBP23.65■■□□□ 1.38
HMGXB3-206ENST00000613459 TONSLQ96HA7 1378 aa23.64■■□□□ 1.37
HMGXB3-206ENST00000613459 EIF5BO60841 1220 aaKnown RBP23.61■■□□□ 1.37
HMGXB3-206ENST00000613459 SLC24A1O60721 1099 aa23.6■■□□□ 1.37
HMGXB3-206ENST00000613459 UPF2Q9HAU5 1272 aaKnown RBP23.6■■□□□ 1.37
HMGXB3-206ENST00000613459 DCAF1Q9Y4B6 1507 aa23.59■■□□□ 1.37
HMGXB3-206ENST00000613459 FKBP8Q14318 412 aa23.57■■□□□ 1.36
HMGXB3-206ENST00000613459 P3H3Q8IVL6 736 aa23.51■■□□□ 1.35
HMGXB3-206ENST00000613459 ZNF777Q9ULD5 760 aaPredicted RBP23.5■■□□□ 1.35
HMGXB3-206ENST00000613459 BCL11AQ9H165 835 aa23.48■■□□□ 1.35
HMGXB3-206ENST00000613459 HSP90AA1P07900 732 aaKnown RBP23.47■■□□□ 1.35
HMGXB3-206ENST00000613459 GOLGA6L2Q8N9W4 650 aaPredicted RBP23.47■■□□□ 1.35
HMGXB3-206ENST00000613459 ESF1Q9H501 851 aaKnown RBP23.43■■□□□ 1.34
HMGXB3-206ENST00000613459 HNRNPUQ00839 825 aaKnown RBP eCLIP23.4■■□□□ 1.34
HMGXB3-206ENST00000613459 ZCCHC6Q5VYS8 1495 aaKnown RBP23.34■■□□□ 1.33
HMGXB3-206ENST00000613459 ARID3CA6NKF2 412 aa23.33■■□□□ 1.33
HMGXB3-206ENST00000613459 SCRIBQ14160 1630 aa23.3■■□□□ 1.32
HMGXB3-206ENST00000613459 ANP32EQ9BTT0 268 aa23.3■■□□□ 1.32
HMGXB3-206ENST00000613459 STAG3Q9UJ98 1225 aa23.3■■□□□ 1.32
HMGXB3-206ENST00000613459 TMC1Q8TDI8 760 aa23.28■■□□□ 1.32
HMGXB3-206ENST00000613459 CCDC136Q96JN2 1154 aa23.27■■□□□ 1.32
HMGXB3-206ENST00000613459 FAM9BQ8IZU0 186 aa23.26■■□□□ 1.31
HMGXB3-206ENST00000613459 DDX10Q13206 875 aaKnown RBP23.25■■□□□ 1.31
HMGXB3-206ENST00000613459 NPM1P06748 294 aaKnown RBP eCLIP23.25■■□□□ 1.31
HMGXB3-206ENST00000613459 WDR43Q15061 677 aaKnown RBP eCLIP23.25■■□□□ 1.31
HMGXB3-206ENST00000613459 NBR1Q14596 966 aa23.23■■□□□ 1.31
HMGXB3-206ENST00000613459 CHGAP10645 457 aaKnown RBP23.22■■□□□ 1.31
HMGXB3-206ENST00000613459 TSPY4P0CV99 314 aa23.16■■□□□ 1.3
HMGXB3-206ENST00000613459 TSPY10P0CW01 314 aa23.16■■□□□ 1.3
HMGXB3-206ENST00000613459 MRS2Q9HD23 443 aa23.14■■□□□ 1.29
HMGXB3-206ENST00000613459 MTUS2Q5JR59 1369 aa23.12■■□□□ 1.29
HMGXB3-206ENST00000613459 MYH16Q9H6N6 1097 aa23.11■■□□□ 1.29
HMGXB3-206ENST00000613459 EEA1Q15075 1411 aa23.11■■□□□ 1.29
HMGXB3-206ENST00000613459 DDRGK1Q96HY6 314 aa23.11■■□□□ 1.29
HMGXB3-206ENST00000613459 MIER1Q8N108 512 aa23.08■■□□□ 1.28
HMGXB3-206ENST00000613459 MYO15BQ96JP2 1530 aa23.06■■□□□ 1.28
HMGXB3-206ENST00000613459 EIF4G2P78344 907 aaKnown RBP eCLIP23.05■■□□□ 1.285e-6■■□□□ 14.3
HMGXB3-206ENST00000613459 RSF1Q96T23 1441 aaPredicted RBP23.04■■□□□ 1.28
HMGXB3-206ENST00000613459 BECN1Q14457 450 aa23.03■■□□□ 1.28
HMGXB3-206ENST00000613459 CLIP1P30622 1438 aa23.03■■□□□ 1.28
HMGXB3-206ENST00000613459 CHIC2Q9UKJ5 165 aa23■■□□□ 1.27
HMGXB3-206ENST00000613459 CCDC180Q9P1Z9 1646 aa22.98■■□□□ 1.27
Retrieved 100 of 20,778 RNA–protein pairs in 45.7 ms