Protein–RNA interactions for Protein: Q9Y566

SHANK1, SH3 and multiple ankyrin repeat domains protein 1, humanhuman

Predictions only

Length 2,161 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK1Q9Y566 RNF166-209ENST00000567844 633 ntTSL 5 BASIC24.44■■□□□ 1.5
SHANK1Q9Y566 AGPS-202ENST00000409888 815 ntTSL 4 BASIC24.43■■□□□ 1.5
SHANK1Q9Y566 HDAC3-201ENST00000305264 1959 ntAPPRIS P1 TSL 1 (best) BASIC24.43■■□□□ 1.5
SHANK1Q9Y566 TRIM52-AS1-203ENST00000509252 529 ntTSL 3 BASIC24.43■■□□□ 1.5
SHANK1Q9Y566 CLDND1-226ENST00000513287 999 ntAPPRIS P1 TSL 2 BASIC24.43■■□□□ 1.5
SHANK1Q9Y566 JUND-201ENST00000252818 1863 ntAPPRIS P1 BASIC24.42■■□□□ 1.5
SHANK1Q9Y566 U2AF1-201ENST00000291552 962 ntAPPRIS P3 TSL 1 (best) BASIC24.41■■□□□ 1.5
SHANK1Q9Y566 MRPL9-201ENST00000368829 882 ntAPPRIS ALT2 TSL 2 BASIC24.41■■□□□ 1.5
SHANK1Q9Y566 AL589765.4-201ENST00000512280 382 ntTSL 3 BASIC24.41■■□□□ 1.5
SHANK1Q9Y566 C16orf95-205ENST00000567970 1031 ntAPPRIS ALT2 TSL 5 BASIC24.41■■□□□ 1.5
SHANK1Q9Y566 U2AF1L5-202ENST00000619610 813 ntAPPRIS ALT2 TSL 1 (best) BASIC24.41■■□□□ 1.5
SHANK1Q9Y566 CLEC3B-202ENST00000428034 752 ntTSL 2 BASIC24.39■■□□□ 1.5
SHANK1Q9Y566 AC108673.1-201ENST00000510422 1159 ntBASIC24.38■■□□□ 1.49
SHANK1Q9Y566 ECI1-207ENST00000570258 1512 ntAPPRIS ALT2 TSL 5 BASIC24.38■■□□□ 1.49
SHANK1Q9Y566 CIB2-204ENST00000557846 934 ntTSL 3 BASIC24.37■■□□□ 1.49
SHANK1Q9Y566 DEXI-201ENST00000331808 1561 ntAPPRIS P1 TSL 1 (best) BASIC24.36■■□□□ 1.49
SHANK1Q9Y566 DOCK5-202ENST00000410074 786 ntTSL 2 BASIC24.36■■□□□ 1.49
SHANK1Q9Y566 AP000547.3-202ENST00000592107 1019 ntTSL 1 (best) BASIC24.35■■□□□ 1.49
SHANK1Q9Y566 GRASP-206ENST00000552049 1688 ntTSL 1 (best) BASIC24.35■■□□□ 1.49
SHANK1Q9Y566 BRD4-212ENST00000630599 726 ntTSL 2 BASIC24.35■■□□□ 1.49
SHANK1Q9Y566 MIR6090-201ENST00000622481 60 ntBASIC24.34■■□□□ 1.49
SHANK1Q9Y566 DTNBP1-212ENST00000622898 1305 ntTSL 1 (best) BASIC24.33■■□□□ 1.49
SHANK1Q9Y566 TUBB6-201ENST00000317702 2064 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
SHANK1Q9Y566 STUB1-201ENST00000219548 1472 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
SHANK1Q9Y566 P2RX2-203ENST00000350048 1344 ntTSL 1 (best) BASIC24.31■■□□□ 1.48
SHANK1Q9Y566 DUX4L11-201ENST00000611504 1267 ntBASIC24.3■■□□□ 1.48
SHANK1Q9Y566 VEGFA-226ENST00000611736 1239 ntTSL 1 (best) BASIC24.3■■□□□ 1.48
SHANK1Q9Y566 DUX4L12-201ENST00000614593 1267 ntBASIC24.3■■□□□ 1.48
SHANK1Q9Y566 LINC01971-201ENST00000617888 1048 ntBASIC24.3■■□□□ 1.48
SHANK1Q9Y566 DUX4L14-201ENST00000621227 1267 ntBASIC24.3■■□□□ 1.48
SHANK1Q9Y566 SAMD1-202ENST00000533683 2164 ntAPPRIS P5 TSL 1 (best) BASIC24.3■■□□□ 1.48
SHANK1Q9Y566 CGREF1-204ENST00000402550 1575 ntTSL 2 BASIC24.3■■□□□ 1.48
SHANK1Q9Y566 RNF150-204ENST00000507500 1530 ntTSL 1 (best) BASIC24.29■■□□□ 1.48
SHANK1Q9Y566 EIF5A-208ENST00000573542 1089 ntAPPRIS P1 TSL 2 BASIC24.29■■□□□ 1.48
SHANK1Q9Y566 STK25-202ENST00000401869 2251 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
SHANK1Q9Y566 PPP4R4-202ENST00000328839 876 ntTSL 1 (best) BASIC24.28■■□□□ 1.48
SHANK1Q9Y566 MISP3-202ENST00000587086 1535 ntAPPRIS P2 TSL 1 (best) BASIC24.28■■□□□ 1.48
SHANK1Q9Y566 PLEKHJ1-201ENST00000326631 1206 ntAPPRIS P1 TSL 1 (best) BASIC24.27■■□□□ 1.48
SHANK1Q9Y566 UBE2L6-201ENST00000287156 1354 ntAPPRIS P1 TSL 1 (best) BASIC24.26■■□□□ 1.47
SHANK1Q9Y566 FAAP20-202ENST00000378546 729 ntAPPRIS P1 TSL 1 (best) BASIC24.26■■□□□ 1.47
SHANK1Q9Y566 CGREF1-202ENST00000312734 1610 ntAPPRIS P2 TSL 5 BASIC24.25■■□□□ 1.47
SHANK1Q9Y566 WSB2-211ENST00000544233 2503 ntTSL 2 BASIC24.25■■□□□ 1.47
SHANK1Q9Y566 UBE2S-203ENST00000589978 496 ntTSL 5 BASIC24.25■■□□□ 1.47
SHANK1Q9Y566 SERINC2-201ENST00000373709 1997 ntAPPRIS P1 TSL 1 (best) BASIC24.25■■□□□ 1.47
SHANK1Q9Y566 POLR1D-201ENST00000302979 1166 ntAPPRIS P2 TSL 1 (best) BASIC24.25■■□□□ 1.47
SHANK1Q9Y566 ING2-201ENST00000302327 1189 ntAPPRIS P1 TSL 1 (best) BASIC24.23■■□□□ 1.47
SHANK1Q9Y566 SLC35D2-203ENST00000375259 1361 ntTSL 1 (best) BASIC24.23■■□□□ 1.47
SHANK1Q9Y566 PARD6A-201ENST00000219255 1248 ntAPPRIS P3 TSL 1 (best) BASIC24.23■■□□□ 1.47
SHANK1Q9Y566 MAD2L2-207ENST00000376692 1118 ntAPPRIS P1 TSL 1 (best) BASIC24.23■■□□□ 1.47
SHANK1Q9Y566 SCX-201ENST00000567180 999 ntAPPRIS P1 TSL 1 (best) BASIC24.23■■□□□ 1.47
SHANK1Q9Y566 MRPL51-201ENST00000229238 1234 ntAPPRIS P1 TSL 1 (best) BASIC24.22■■□□□ 1.47
SHANK1Q9Y566 CIB1-201ENST00000328649 1247 ntAPPRIS P1 TSL 1 (best) BASIC24.22■■□□□ 1.47
SHANK1Q9Y566 AURKAIP1-203ENST00000338370 1072 ntAPPRIS P1 TSL 1 (best) BASIC24.22■■□□□ 1.47
SHANK1Q9Y566 PRSS41-201ENST00000399677 1127 ntAPPRIS P1 TSL 5 BASIC24.22■■□□□ 1.47
SHANK1Q9Y566 AL139393.1-201ENST00000417479 573 ntTSL 5 BASIC24.22■■□□□ 1.47
SHANK1Q9Y566 CIB1-202ENST00000612800 1096 ntTSL 1 (best) BASIC24.22■■□□□ 1.47
SHANK1Q9Y566 BCL7B-202ENST00000411832 1458 ntTSL 2 BASIC24.22■■□□□ 1.47
SHANK1Q9Y566 ACTR3B-202ENST00000377776 1566 ntTSL 1 (best) BASIC24.21■■□□□ 1.47
SHANK1Q9Y566 AC018755.3-201ENST00000598755 664 ntTSL 2 BASIC24.21■■□□□ 1.47
SHANK1Q9Y566 GADD45G-201ENST00000252506 1065 ntAPPRIS P1 TSL 1 (best) BASIC24.2■■□□□ 1.47
SHANK1Q9Y566 RNF130-201ENST00000261947 1766 ntTSL 1 (best) BASIC24.2■■□□□ 1.47
SHANK1Q9Y566 C5orf66-AS1-201ENST00000507035 843 ntTSL 2 BASIC24.2■■□□□ 1.46
SHANK1Q9Y566 PTPRF-216ENST00000617451 1129 ntTSL 5 BASIC24.2■■□□□ 1.46
SHANK1Q9Y566 ABHD17AP3-201ENST00000503096 1137 ntBASIC24.19■■□□□ 1.46
SHANK1Q9Y566 RRAD-202ENST00000420652 1476 ntAPPRIS P1 TSL 1 (best) BASIC24.19■■□□□ 1.46
SHANK1Q9Y566 AC007383.2-202ENST00000435627 482 ntTSL 2 BASIC24.18■■□□□ 1.46
SHANK1Q9Y566 STARD10-220ENST00000545082 1085 ntTSL 3 BASIC24.18■■□□□ 1.46
SHANK1Q9Y566 FAM78B-202ENST00000354422 1475 ntAPPRIS P1 TSL 2 BASIC24.18■■□□□ 1.46
SHANK1Q9Y566 U2AF1L5-201ENST00000610664 897 ntAPPRIS P5 TSL 1 (best) BASIC24.18■■□□□ 1.46
SHANK1Q9Y566 CTDNEP1-210ENST00000574322 1708 ntAPPRIS P1 TSL 1 (best) BASIC24.16■■□□□ 1.46
SHANK1Q9Y566 NME2-205ENST00000512737 826 ntAPPRIS P1 TSL 1 (best) BASIC24.16■■□□□ 1.46
SHANK1Q9Y566 BRF1-221ENST00000619151 1530 ntTSL 5 BASIC24.16■■□□□ 1.46
SHANK1Q9Y566 RHOC-202ENST00000339083 1418 ntAPPRIS P1 TSL 1 (best) BASIC24.15■■□□□ 1.46
SHANK1Q9Y566 AC012615.2-201ENST00000586259 447 ntTSL 4 BASIC24.15■■□□□ 1.46
SHANK1Q9Y566 CPNE1-203ENST00000397442 1695 ntTSL 5 BASIC24.14■■□□□ 1.46
SHANK1Q9Y566 TCAM1P-201ENST00000463377 452 ntTSL 3 BASIC24.14■■□□□ 1.45
SHANK1Q9Y566 ABHD17A-201ENST00000250974 1630 ntTSL 1 (best) BASIC24.13■■□□□ 1.45
SHANK1Q9Y566 POU3F1-201ENST00000373012 2184 ntAPPRIS P1 BASIC24.13■■□□□ 1.45
SHANK1Q9Y566 SLC15A4-201ENST00000266771 2779 ntAPPRIS P1 TSL 1 (best) BASIC24.13■■□□□ 1.45
SHANK1Q9Y566 C7orf50-202ENST00000397098 2131 ntAPPRIS P2 TSL 1 (best) BASIC24.13■■□□□ 1.45
SHANK1Q9Y566 CTDNEP1-201ENST00000318988 1549 ntAPPRIS P1 TSL 1 (best) BASIC24.12■■□□□ 1.45
SHANK1Q9Y566 KLC2-205ENST00000394078 1557 ntTSL 5 BASIC24.12■■□□□ 1.45
SHANK1Q9Y566 VEGFA-208ENST00000417285 1081 ntAPPRIS ALT2 TSL 1 (best) BASIC24.12■■□□□ 1.45
SHANK1Q9Y566 AP000911.3-201ENST00000526377 1130 ntTSL 3 BASIC24.12■■□□□ 1.45
SHANK1Q9Y566 AC016595.1-201ENST00000559410 383 ntTSL 3 BASIC24.11■■□□□ 1.45
SHANK1Q9Y566 GALK1-205ENST00000588479 1866 ntAPPRIS P1 TSL 1 (best) BASIC24.11■■□□□ 1.45
SHANK1Q9Y566 GNPTAB-206ENST00000549940 1678 ntTSL 1 (best) BASIC24.1■■□□□ 1.45
SHANK1Q9Y566 MXD3-203ENST00000439742 1483 ntAPPRIS P1 TSL 1 (best) BASIC24.1■■□□□ 1.45
SHANK1Q9Y566 UBALD1-203ENST00000587649 707 ntTSL 3 BASIC24.1■■□□□ 1.45
SHANK1Q9Y566 SLC9A3R2-202ENST00000432365 1564 ntTSL 1 (best) BASIC24.09■■□□□ 1.45
SHANK1Q9Y566 KCNK1-202ENST00000366621 2161 ntAPPRIS P1 TSL 1 (best) BASIC24.09■■□□□ 1.45
SHANK1Q9Y566 DTNBP1-202ENST00000344537 1403 ntAPPRIS P1 TSL 1 (best) BASIC24.09■■□□□ 1.45
SHANK1Q9Y566 H2AFV-204ENST00000350771 687 ntTSL 2 BASIC24.08■■□□□ 1.45
SHANK1Q9Y566 DUX4L13-201ENST00000554103 1267 ntBASIC24.08■■□□□ 1.44
SHANK1Q9Y566 METRNL-202ENST00000570778 967 ntTSL 5 BASIC24.08■■□□□ 1.44
SHANK1Q9Y566 DUX4L15-201ENST00000611059 1267 ntBASIC24.08■■□□□ 1.44
SHANK1Q9Y566 DUX4L23-201ENST00000615195 1269 ntBASIC24.08■■□□□ 1.44
SHANK1Q9Y566 DUX4L24-201ENST00000617576 1269 ntBASIC24.08■■□□□ 1.44
SHANK1Q9Y566 DUX4L22-201ENST00000618238 1269 ntBASIC24.08■■□□□ 1.44
SHANK1Q9Y566 DUX4L20-201ENST00000619712 1269 ntBASIC24.08■■□□□ 1.44
Retrieved 100 of 98,524 protein–RNA pairs in 50.9 ms