Protein–RNA interactions for Protein: Q96PZ7

CSMD1, CUB and sushi domain-containing protein 1, humanhuman

Predictions only

Length 3,565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD1Q96PZ7 MRPL9-201ENST00000368829 882 ntAPPRIS ALT2 TSL 2 BASIC23.26■■□□□ 1.31
CSMD1Q96PZ7 AL589765.4-201ENST00000512280 382 ntTSL 3 BASIC23.26■■□□□ 1.31
CSMD1Q96PZ7 AURKAIP1-203ENST00000338370 1072 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
CSMD1Q96PZ7 CAPNS1-216ENST00000628306 1389 ntTSL 5 BASIC23.24■■□□□ 1.31
CSMD1Q96PZ7 NMB-202ENST00000394588 1017 ntTSL 1 (best) BASIC23.24■■□□□ 1.31
CSMD1Q96PZ7 RPS2-209ENST00000529806 993 ntTSL 3 BASIC23.24■■□□□ 1.31
CSMD1Q96PZ7 CHCHD4-201ENST00000295767 1603 ntTSL 2 BASIC23.23■■□□□ 1.31
CSMD1Q96PZ7 SRP68-213ENST00000629930 165 ntTSL 5 BASIC23.23■■□□□ 1.31
CSMD1Q96PZ7 AC016595.1-201ENST00000559410 383 ntTSL 3 BASIC23.22■■□□□ 1.31
CSMD1Q96PZ7 TPRG1L-201ENST00000344579 2189 ntTSL 1 (best) BASIC23.22■■□□□ 1.31
CSMD1Q96PZ7 KMT2E-AS1-201ENST00000453677 736 ntTSL 3 BASIC23.21■■□□□ 1.31
CSMD1Q96PZ7 HSD11B1L-209ENST00000577917 1553 ntTSL 1 (best) BASIC23.2■■□□□ 1.3
CSMD1Q96PZ7 VEGFA-226ENST00000611736 1239 ntTSL 1 (best) BASIC23.2■■□□□ 1.3
CSMD1Q96PZ7 STARD10-220ENST00000545082 1085 ntTSL 3 BASIC23.19■■□□□ 1.3
CSMD1Q96PZ7 DEXI-201ENST00000331808 1561 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
CSMD1Q96PZ7 MIR6090-201ENST00000622481 60 ntBASIC23.19■■□□□ 1.3
CSMD1Q96PZ7 PABPN1-201ENST00000216727 2001 ntAPPRIS P2 TSL 1 (best) BASIC23.19■■□□□ 1.3
CSMD1Q96PZ7 CACNG6-201ENST00000252729 1853 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
CSMD1Q96PZ7 MAPK3-205ENST00000395202 1008 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
CSMD1Q96PZ7 GNB5-202ENST00000358784 1735 ntAPPRIS ALT1 TSL 1 (best) BASIC23.18■■□□□ 1.3
CSMD1Q96PZ7 ECI1-207ENST00000570258 1512 ntAPPRIS ALT2 TSL 5 BASIC23.17■■□□□ 1.3
CSMD1Q96PZ7 MISP3-202ENST00000587086 1535 ntAPPRIS P2 TSL 1 (best) BASIC23.17■■□□□ 1.3
CSMD1Q96PZ7 MMP28-203ENST00000612672 1092 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
CSMD1Q96PZ7 U2AF1-203ENST00000398137 1019 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
CSMD1Q96PZ7 U2AF1L5-212ENST00000639996 1019 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
CSMD1Q96PZ7 ARTN-202ENST00000372359 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC23.16■■□□□ 1.3
CSMD1Q96PZ7 PTPMT1-203ENST00000426530 1014 ntTSL 1 (best) BASIC23.14■■□□□ 1.3
CSMD1Q96PZ7 C5orf66-AS1-201ENST00000507035 843 ntTSL 2 BASIC23.14■■□□□ 1.3
CSMD1Q96PZ7 RNF126P1-201ENST00000567452 1320 ntBASIC23.14■■□□□ 1.3
CSMD1Q96PZ7 CIB2-204ENST00000557846 934 ntTSL 3 BASIC23.14■■□□□ 1.29
CSMD1Q96PZ7 HNRNPUL1-221ENST00000617305 1018 ntTSL 1 (best) BASIC23.14■■□□□ 1.29
CSMD1Q96PZ7 MXD3-208ENST00000513063 861 ntAPPRIS P1 TSL 5 BASIC23.14■■□□□ 1.29
CSMD1Q96PZ7 PLEKHJ1-201ENST00000326631 1206 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
CSMD1Q96PZ7 GIPC1-201ENST00000345425 1782 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
CSMD1Q96PZ7 MAPK4-202ENST00000540640 1576 ntTSL 2 BASIC23.11■■□□□ 1.29
CSMD1Q96PZ7 KCTD17-201ENST00000402077 1691 ntAPPRIS P3 TSL 1 (best) BASIC23.11■■□□□ 1.29
CSMD1Q96PZ7 DUX4L13-201ENST00000554103 1267 ntBASIC23.1■■□□□ 1.29
CSMD1Q96PZ7 DUX4L15-201ENST00000611059 1267 ntBASIC23.1■■□□□ 1.29
CSMD1Q96PZ7 DUX4L23-201ENST00000615195 1269 ntBASIC23.1■■□□□ 1.29
CSMD1Q96PZ7 DUX4L24-201ENST00000617576 1269 ntBASIC23.1■■□□□ 1.29
CSMD1Q96PZ7 DUX4L22-201ENST00000618238 1269 ntBASIC23.1■■□□□ 1.29
CSMD1Q96PZ7 DUX4L20-201ENST00000619712 1269 ntBASIC23.1■■□□□ 1.29
CSMD1Q96PZ7 DUX4L21-201ENST00000622058 1269 ntBASIC23.1■■□□□ 1.29
CSMD1Q96PZ7 DUX4L10-201ENST00000622460 1267 ntBASIC23.1■■□□□ 1.29
CSMD1Q96PZ7 DUX4L25-201ENST00000624915 1269 ntBASIC23.1■■□□□ 1.29
CSMD1Q96PZ7 NFKBIA-209ENST00000557389 1537 ntTSL 2 BASIC23.1■■□□□ 1.29
CSMD1Q96PZ7 IGFBP2-201ENST00000233809 1439 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
CSMD1Q96PZ7 KIAA2013-203ENST00000616327 2170 ntAPPRIS P1 TSL 5 BASIC23.09■■□□□ 1.29
CSMD1Q96PZ7 TXNL4A-210ENST00000591711 669 ntTSL 2 BASIC23.09■■□□□ 1.29
CSMD1Q96PZ7 RRAD-202ENST00000420652 1476 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.28
CSMD1Q96PZ7 METRNL-202ENST00000570778 967 ntTSL 5 BASIC23.07■■□□□ 1.28
CSMD1Q96PZ7 SDCCAG3-202ENST00000357365 2304 ntAPPRIS P4 TSL 5 BASIC23.06■■□□□ 1.28
CSMD1Q96PZ7 METTL24-201ENST00000338882 1119 ntAPPRIS P1 TSL 5 BASIC23.06■■□□□ 1.28
CSMD1Q96PZ7 ENHO-201ENST00000399775 1082 ntAPPRIS P1 TSL 2 BASIC23.06■■□□□ 1.28
CSMD1Q96PZ7 LMO2-202ENST00000395833 1687 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
CSMD1Q96PZ7 RHOC-202ENST00000339083 1418 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
CSMD1Q96PZ7 DUSP14-206ENST00000617516 1537 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
CSMD1Q96PZ7 RUNX2-211ENST00000625924 1458 ntAPPRIS ALT2 TSL 1 (best) BASIC23.05■■□□□ 1.28
CSMD1Q96PZ7 GSTP1-202ENST00000398606 965 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
CSMD1Q96PZ7 WASH5P-204ENST00000632292 975 ntBASIC23.04■■□□□ 1.28
CSMD1Q96PZ7 POLR3H-201ENST00000337566 1330 ntTSL 1 (best) BASIC23.03■■□□□ 1.28
CSMD1Q96PZ7 SMARCD3-201ENST00000262188 1993 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
CSMD1Q96PZ7 CDKN3-202ENST00000335183 893 ntAPPRIS P2 TSL 1 (best) BASIC23.03■■□□□ 1.28
CSMD1Q96PZ7 AC009041.3-201ENST00000564390 879 ntTSL 5 BASIC23.03■■□□□ 1.28
CSMD1Q96PZ7 CDKN3-211ENST00000611205 874 ntAPPRIS ALT2 TSL 5 BASIC23.03■■□□□ 1.28
CSMD1Q96PZ7 ZBTB25-202ENST00000555220 1440 ntTSL 1 (best) BASIC23.03■■□□□ 1.28
CSMD1Q96PZ7 ATRAID-201ENST00000380171 1240 ntTSL 1 (best) BASIC23.02■■□□□ 1.28
CSMD1Q96PZ7 AC068134.2-201ENST00000437095 576 ntTSL 3 BASIC23.02■■□□□ 1.28
CSMD1Q96PZ7 ACOT1-202ENST00000557556 1271 ntTSL 1 (best) BASIC23.02■■□□□ 1.28
CSMD1Q96PZ7 NADK2-202ENST00000381937 2243 ntAPPRIS P1 TSL 2 BASIC23■■□□□ 1.27
CSMD1Q96PZ7 GPX1-201ENST00000419349 1106 ntBASIC23■■□□□ 1.27
CSMD1Q96PZ7 PTCH1-210ENST00000468211 1254 ntTSL 1 (best) BASIC22.99■■□□□ 1.27
CSMD1Q96PZ7 UBE2A-207ENST00000628549 934 ntTSL 2 BASIC22.99■■□□□ 1.27
CSMD1Q96PZ7 DOCK5-202ENST00000410074 786 ntTSL 2 BASIC22.98■■□□□ 1.27
CSMD1Q96PZ7 NTF6A-201ENST00000591175 560 ntBASIC22.98■■□□□ 1.27
CSMD1Q96PZ7 VEGFA-202ENST00000324450 954 ntTSL 1 (best) BASIC22.96■■□□□ 1.27
CSMD1Q96PZ7 VEGFA-203ENST00000372055 1286 ntTSL 1 (best) BASIC22.96■■□□□ 1.27
CSMD1Q96PZ7 VEGFA-213ENST00000482630 1146 ntTSL 1 (best) BASIC22.96■■□□□ 1.27
CSMD1Q96PZ7 VEGFA-227ENST00000615393 984 ntTSL 1 (best) BASIC22.96■■□□□ 1.27
CSMD1Q96PZ7 VEGFA-228ENST00000617771 1116 ntTSL 1 (best) BASIC22.96■■□□□ 1.27
CSMD1Q96PZ7 VEGFA-229ENST00000621747 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC22.96■■□□□ 1.27
CSMD1Q96PZ7 VEGFA-230ENST00000640482 1065 ntAPPRIS ALT2 TSL 1 (best) BASIC22.96■■□□□ 1.27
CSMD1Q96PZ7 VEGFA-232ENST00000640653 1170 ntAPPRIS ALT2 TSL 1 (best) BASIC22.96■■□□□ 1.27
CSMD1Q96PZ7 HDAC3-201ENST00000305264 1959 ntAPPRIS P1 TSL 1 (best) BASIC22.96■■□□□ 1.27
CSMD1Q96PZ7 AC018358.1-201ENST00000631079 1402 ntBASIC22.96■■□□□ 1.27
CSMD1Q96PZ7 MAD2L2-207ENST00000376692 1118 ntAPPRIS P1 TSL 1 (best) BASIC22.96■■□□□ 1.27
CSMD1Q96PZ7 PKIG-207ENST00000372894 1191 ntAPPRIS P1 TSL 1 (best) BASIC22.95■■□□□ 1.27
CSMD1Q96PZ7 ARL6IP4-211ENST00000454885 1318 ntAPPRIS ALT2 TSL 1 (best) BASIC22.95■■□□□ 1.26
CSMD1Q96PZ7 H2AFV-204ENST00000350771 687 ntTSL 2 BASIC22.95■■□□□ 1.26
CSMD1Q96PZ7 DTNBP1-202ENST00000344537 1403 ntAPPRIS P1 TSL 1 (best) BASIC22.95■■□□□ 1.26
CSMD1Q96PZ7 CYP26C1-201ENST00000285949 1569 ntAPPRIS P1 TSL 1 (best) BASIC22.94■■□□□ 1.26
CSMD1Q96PZ7 PRSS41-201ENST00000399677 1127 ntAPPRIS P1 TSL 5 BASIC22.93■■□□□ 1.26
CSMD1Q96PZ7 CAAP1-205ENST00000520187 773 ntTSL 5 BASIC22.93■■□□□ 1.26
CSMD1Q96PZ7 QDPR-201ENST00000281243 1648 ntAPPRIS P1 TSL 1 (best) BASIC22.93■■□□□ 1.26
CSMD1Q96PZ7 LIME1-206ENST00000487026 805 ntAPPRIS ALT2 TSL 5 BASIC22.93■■□□□ 1.26
CSMD1Q96PZ7 AC012354.3-201ENST00000623734 483 ntBASIC22.93■■□□□ 1.26
CSMD1Q96PZ7 BLOC1S3-202ENST00000587722 732 ntAPPRIS P1 BASIC22.92■■□□□ 1.26
CSMD1Q96PZ7 HES6-205ENST00000409356 528 ntTSL 2 BASIC22.91■■□□□ 1.26
CSMD1Q96PZ7 CHMP4B-201ENST00000217402 1646 ntAPPRIS P1 TSL 1 (best) BASIC22.91■■□□□ 1.26
CSMD1Q96PZ7 POLR1D-201ENST00000302979 1166 ntAPPRIS P2 TSL 1 (best) BASIC22.91■■□□□ 1.26
Retrieved 100 of 98,524 protein–RNA pairs in 33.7 ms