Protein–RNA interactions for Protein: P49711

CTCF, Transcriptional repressor CTCF, humanhuman

Predicted RBP Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTCFP49711 CDKN3-202ENST00000335183 893 ntAPPRIS P2 TSL 1 (best) BASIC31.77■■■□□ 2.68
CTCFP49711 CDKN3-211ENST00000611205 874 ntAPPRIS ALT2 TSL 5 BASIC31.77■■■□□ 2.68
CTCFP49711 AC005540.1-201ENST00000413911 919 ntTSL 3 BASIC31.76■■■□□ 2.67
CTCFP49711 HNRNPUL1-221ENST00000617305 1018 ntTSL 1 (best) BASIC31.76■■■□□ 2.67
CTCFP49711 H2AFV-204ENST00000350771 687 ntTSL 2 BASIC31.75■■■□□ 2.67
CTCFP49711 AC012354.3-201ENST00000623734 483 ntBASIC31.75■■■□□ 2.67
CTCFP49711 TGIF1-202ENST00000343820 2076 ntAPPRIS P1 TSL 1 (best) BASIC31.75■■■□□ 2.67
CTCFP49711 CRNDE-206ENST00000559432 587 ntTSL 3 BASIC31.74■■■□□ 2.67
CTCFP49711 ARL6IP4-211ENST00000454885 1318 ntAPPRIS ALT2 TSL 1 (best) BASIC31.74■■■□□ 2.67
CTCFP49711 AC108673.1-201ENST00000510422 1159 ntBASIC31.73■■■□□ 2.67
CTCFP49711 TRIP10-202ENST00000313285 2035 ntAPPRIS P1 TSL 1 (best) BASIC31.73■■■□□ 2.67
CTCFP49711 PLEKHJ1-201ENST00000326631 1206 ntAPPRIS P1 TSL 1 (best) BASIC31.72■■■□□ 2.67
CTCFP49711 TXNL4A-210ENST00000591711 669 ntTSL 2 BASIC31.71■■■□□ 2.67
CTCFP49711 SRP68-213ENST00000629930 165 ntTSL 5 BASIC31.71■■■□□ 2.67
CTCFP49711 HSD11B1L-209ENST00000577917 1553 ntTSL 1 (best) BASIC31.71■■■□□ 2.67
CTCFP49711 MNX1-207ENST00000543409 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC31.69■■■□□ 2.66
CTCFP49711 METTL24-201ENST00000338882 1119 ntAPPRIS P1 TSL 5 BASIC31.69■■■□□ 2.66
CTCFP49711 WASH5P-204ENST00000632292 975 ntBASIC31.69■■■□□ 2.66
CTCFP49711 DEXI-201ENST00000331808 1561 ntAPPRIS P1 TSL 1 (best) BASIC31.68■■■□□ 2.66
CTCFP49711 CHCHD4-201ENST00000295767 1603 ntTSL 2 BASIC31.68■■■□□ 2.66
CTCFP49711 PRSS41-201ENST00000399677 1127 ntAPPRIS P1 TSL 5 BASIC31.68■■■□□ 2.66
CTCFP49711 MIR6090-201ENST00000622481 60 ntBASIC31.68■■■□□ 2.66
CTCFP49711 SSTR4-201ENST00000255008 1427 ntAPPRIS P1 BASIC31.67■■■□□ 2.66
CTCFP49711 ATRAID-201ENST00000380171 1240 ntTSL 1 (best) BASIC31.67■■■□□ 2.66
CTCFP49711 RNF126P1-201ENST00000567452 1320 ntBASIC31.67■■■□□ 2.66
CTCFP49711 PPP1R1A-201ENST00000257905 1826 ntAPPRIS P1 TSL 1 (best) BASIC31.66■■■□□ 2.66
CTCFP49711 DOCK5-202ENST00000410074 786 ntTSL 2 BASIC31.65■■■□□ 2.66
CTCFP49711 RANBP1-202ENST00000402752 1132 ntAPPRIS ALT1 TSL 1 (best) BASIC31.64■■■□□ 2.66
CTCFP49711 GPX1-201ENST00000419349 1106 ntBASIC31.64■■■□□ 2.66
CTCFP49711 AC016595.1-201ENST00000559410 383 ntTSL 3 BASIC31.64■■■□□ 2.66
CTCFP49711 KCTD17-209ENST00000610767 1502 ntAPPRIS ALT2 TSL 3 BASIC31.64■■■□□ 2.66
CTCFP49711 AC018358.1-201ENST00000631079 1402 ntBASIC31.63■■■□□ 2.65
CTCFP49711 EBPL-201ENST00000242827 914 ntAPPRIS P1 TSL 1 (best) BASIC31.62■■■□□ 2.65
CTCFP49711 VEGFA-202ENST00000324450 954 ntTSL 1 (best) BASIC31.62■■■□□ 2.65
CTCFP49711 GIPC1-201ENST00000345425 1782 ntAPPRIS P1 TSL 1 (best) BASIC31.62■■■□□ 2.65
CTCFP49711 VEGFA-203ENST00000372055 1286 ntTSL 1 (best) BASIC31.62■■■□□ 2.65
CTCFP49711 PTPMT1-203ENST00000426530 1014 ntTSL 1 (best) BASIC31.62■■■□□ 2.65
CTCFP49711 VEGFA-213ENST00000482630 1146 ntTSL 1 (best) BASIC31.62■■■□□ 2.65
CTCFP49711 NTF6A-201ENST00000591175 560 ntBASIC31.62■■■□□ 2.65
CTCFP49711 VEGFA-226ENST00000611736 1239 ntTSL 1 (best) BASIC31.62■■■□□ 2.65
CTCFP49711 VEGFA-227ENST00000615393 984 ntTSL 1 (best) BASIC31.62■■■□□ 2.65
CTCFP49711 VEGFA-228ENST00000617771 1116 ntTSL 1 (best) BASIC31.62■■■□□ 2.65
CTCFP49711 VEGFA-229ENST00000621747 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC31.62■■■□□ 2.65
CTCFP49711 VEGFA-230ENST00000640482 1065 ntAPPRIS ALT2 TSL 1 (best) BASIC31.62■■■□□ 2.65
CTCFP49711 VEGFA-232ENST00000640653 1170 ntAPPRIS ALT2 TSL 1 (best) BASIC31.62■■■□□ 2.65
CTCFP49711 DUSP14-206ENST00000617516 1537 ntAPPRIS P1 TSL 1 (best) BASIC31.61■■■□□ 2.65
CTCFP49711 MRPL23-202ENST00000381519 643 ntAPPRIS P1 TSL 3 BASIC31.6■■■□□ 2.65
CTCFP49711 MRPL23-205ENST00000397298 736 ntAPPRIS P1 TSL 1 (best) BASIC31.6■■■□□ 2.65
CTCFP49711 MAP3K8-203ENST00000375322 932 ntTSL 2 BASIC31.59■■■□□ 2.65
CTCFP49711 RCE1-201ENST00000309657 1485 ntAPPRIS P1 TSL 1 (best) BASIC31.59■■■□□ 2.65
CTCFP49711 TCAM1P-201ENST00000463377 452 ntTSL 3 BASIC31.58■■■□□ 2.65
CTCFP49711 U2AF1L5-201ENST00000610664 897 ntAPPRIS P5 TSL 1 (best) BASIC31.58■■■□□ 2.65
CTCFP49711 CCM2-218ENST00000541586 1719 ntTSL 3 BASIC31.58■■■□□ 2.65
CTCFP49711 AC009041.3-201ENST00000564390 879 ntTSL 5 BASIC31.57■■■□□ 2.64
CTCFP49711 FKBP1A-210ENST00000614856 562 ntTSL 2 BASIC31.55■■■□□ 2.64
CTCFP49711 U2AF1-203ENST00000398137 1019 ntTSL 1 (best) BASIC31.54■■■□□ 2.64
CTCFP49711 U2AF1L5-212ENST00000639996 1019 ntTSL 1 (best) BASIC31.54■■■□□ 2.64
CTCFP49711 CAPNS1-216ENST00000628306 1389 ntTSL 5 BASIC31.54■■■□□ 2.64
CTCFP49711 AC019069.1-201ENST00000610008 1333 ntBASIC31.53■■■□□ 2.64
CTCFP49711 ENHO-201ENST00000399775 1082 ntAPPRIS P1 TSL 2 BASIC31.53■■■□□ 2.64
CTCFP49711 DUX4L13-201ENST00000554103 1267 ntBASIC31.52■■■□□ 2.64
CTCFP49711 ACOT1-202ENST00000557556 1271 ntTSL 1 (best) BASIC31.52■■■□□ 2.64
CTCFP49711 DUX4L15-201ENST00000611059 1267 ntBASIC31.52■■■□□ 2.64
CTCFP49711 DUX4L23-201ENST00000615195 1269 ntBASIC31.52■■■□□ 2.64
CTCFP49711 DUX4L24-201ENST00000617576 1269 ntBASIC31.52■■■□□ 2.64
CTCFP49711 DUX4L22-201ENST00000618238 1269 ntBASIC31.52■■■□□ 2.64
CTCFP49711 DUX4L20-201ENST00000619712 1269 ntBASIC31.52■■■□□ 2.64
CTCFP49711 DUX4L21-201ENST00000622058 1269 ntBASIC31.52■■■□□ 2.64
CTCFP49711 DUX4L10-201ENST00000622460 1267 ntBASIC31.52■■■□□ 2.64
CTCFP49711 DUX4L25-201ENST00000624915 1269 ntBASIC31.52■■■□□ 2.64
CTCFP49711 MISP3-202ENST00000587086 1535 ntAPPRIS P2 TSL 1 (best) BASIC31.51■■■□□ 2.63
CTCFP49711 HES6-205ENST00000409356 528 ntTSL 2 BASIC31.51■■■□□ 2.63
CTCFP49711 RRAD-202ENST00000420652 1476 ntAPPRIS P1 TSL 1 (best) BASIC31.51■■■□□ 2.63
CTCFP49711 KHSRP-213ENST00000619396 2226 ntAPPRIS ALT2 TSL 5 BASIC31.51■■■□□ 2.63
CTCFP49711 CRIP1-201ENST00000330233 1311 ntAPPRIS P1 TSL 1 (best) BASIC31.5■■■□□ 2.63
CTCFP49711 UBE2S-203ENST00000589978 496 ntTSL 5 BASIC31.49■■■□□ 2.63
CTCFP49711 C1orf232-201ENST00000634842 643 ntAPPRIS P5 TSL 5 BASIC31.49■■■□□ 2.63
CTCFP49711 IGFBP2-201ENST00000233809 1439 ntAPPRIS P1 TSL 1 (best) BASIC31.49■■■□□ 2.63
CTCFP49711 C11orf63-202ENST00000307257 1964 ntTSL 2 BASIC31.48■■■□□ 2.63
CTCFP49711 ZBTB25-202ENST00000555220 1440 ntTSL 1 (best) BASIC31.48■■■□□ 2.63
CTCFP49711 PKIG-207ENST00000372894 1191 ntAPPRIS P1 TSL 1 (best) BASIC31.47■■■□□ 2.63
CTCFP49711 CMAS-201ENST00000229329 1787 ntAPPRIS P1 TSL 1 (best) BASIC31.46■■■□□ 2.63
CTCFP49711 CAAP1-205ENST00000520187 773 ntTSL 5 BASIC31.46■■■□□ 2.63
CTCFP49711 ZSCAN1-202ENST00000391700 952 ntTSL 1 (best) BASIC31.44■■■□□ 2.62
CTCFP49711 RPRML-201ENST00000322329 1093 ntAPPRIS P1 BASIC31.43■■■□□ 2.62
CTCFP49711 AL033527.3-201ENST00000566366 1196 ntBASIC31.42■■■□□ 2.62
CTCFP49711 TPT1-202ENST00000379055 948 ntTSL 2 BASIC31.41■■■□□ 2.62
CTCFP49711 AC012615.2-201ENST00000586259 447 ntTSL 4 BASIC31.41■■■□□ 2.62
CTCFP49711 SNX5-219ENST00000606602 885 ntTSL 1 (best) BASIC31.41■■■□□ 2.62
CTCFP49711 BLOC1S3-202ENST00000587722 732 ntAPPRIS P1 BASIC31.4■■■□□ 2.62
CTCFP49711 POLR3H-201ENST00000337566 1330 ntTSL 1 (best) BASIC31.4■■■□□ 2.62
CTCFP49711 PTCH1-210ENST00000468211 1254 ntTSL 1 (best) BASIC31.39■■■□□ 2.62
CTCFP49711 AC008813.1-201ENST00000536597 885 ntBASIC31.37■■■□□ 2.61
CTCFP49711 AP000547.3-202ENST00000592107 1019 ntTSL 1 (best) BASIC31.37■■■□□ 2.61
CTCFP49711 C11orf96-203ENST00000617612 1294 ntAPPRIS P1 BASIC31.37■■■□□ 2.61
CTCFP49711 RAD51-210ENST00000557850 1397 ntTSL 2 BASIC31.37■■■□□ 2.61
CTCFP49711 MAPK4-202ENST00000540640 1576 ntTSL 2 BASIC31.36■■■□□ 2.61
CTCFP49711 NFKBIA-209ENST00000557389 1537 ntTSL 2 BASIC31.36■■■□□ 2.61
CTCFP49711 UBA52-204ENST00000595158 743 ntAPPRIS P1 TSL 3 BASIC31.34■■■□□ 2.61
CTCFP49711 CBWD5-202ENST00000377384 1347 ntTSL 1 (best) BASIC31.33■■■□□ 2.61
Retrieved 100 of 98,524 protein–RNA pairs in 38.9 ms