Protein–RNA interactions for Protein: P12107

COL11A1, Collagen alpha-1(XI) chain, humanhuman

Predicted RBP Predictions only

Length 1,806 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL11A1P12107 VEGFA-207ENST00000413642 1197 ntAPPRIS ALT2 TSL 1 (best) BASIC31.05■■■□□ 2.56
COL11A1P12107 KCNQ5-204ENST00000370392 1469 ntTSL 1 (best) BASIC31.03■■■□□ 2.56
COL11A1P12107 AC096888.1-201ENST00000487097 565 ntTSL 4 BASIC31.03■■■□□ 2.56
COL11A1P12107 ACOT12-204ENST00000513751 612 ntTSL 1 (best) BASIC31.03■■■□□ 2.56
COL11A1P12107 AL139393.1-201ENST00000417479 573 ntTSL 5 BASIC31.01■■■□□ 2.55
COL11A1P12107 SLC9A3R2-202ENST00000432365 1564 ntTSL 1 (best) BASIC30.99■■■□□ 2.55
COL11A1P12107 MTCP1-202ENST00000369476 2274 ntAPPRIS P1 TSL 3 BASIC30.99■■■□□ 2.55
COL11A1P12107 CCDC149-203ENST00000502801 1079 ntTSL 1 (best) BASIC30.98■■■□□ 2.55
COL11A1P12107 PDCD2-209ENST00000542896 1082 ntTSL 2 BASIC30.98■■■□□ 2.55
COL11A1P12107 FTCD-202ENST00000397743 1834 ntTSL 1 (best) BASIC30.98■■■□□ 2.55
COL11A1P12107 HS3ST6-201ENST00000454677 1273 ntAPPRIS P1 TSL 1 (best) BASIC30.98■■■□□ 2.55
COL11A1P12107 REPIN1-204ENST00000466559 1022 ntTSL 1 (best) BASIC30.97■■■□□ 2.55
COL11A1P12107 VAX2-201ENST00000234392 1147 ntAPPRIS P1 TSL 1 (best) BASIC30.96■■■□□ 2.55
COL11A1P12107 UBE2A-207ENST00000628549 934 ntTSL 2 BASIC30.95■■■□□ 2.55
COL11A1P12107 ZNRF2P2-203ENST00000454624 420 ntBASIC30.94■■■□□ 2.54
COL11A1P12107 SCX-201ENST00000567180 999 ntAPPRIS P1 TSL 1 (best) BASIC30.94■■■□□ 2.54
COL11A1P12107 CIB1-201ENST00000328649 1247 ntAPPRIS P1 TSL 1 (best) BASIC30.93■■■□□ 2.54
COL11A1P12107 CIB1-202ENST00000612800 1096 ntTSL 1 (best) BASIC30.93■■■□□ 2.54
COL11A1P12107 CCM2-201ENST00000258781 1894 ntAPPRIS P3 TSL 1 (best) BASIC30.92■■■□□ 2.54
COL11A1P12107 TRNP1-201ENST00000522111 1958 ntAPPRIS P2 TSL 1 (best) BASIC30.92■■■□□ 2.54
COL11A1P12107 POLR1D-201ENST00000302979 1166 ntAPPRIS P2 TSL 1 (best) BASIC30.92■■■□□ 2.54
COL11A1P12107 DOCK5-202ENST00000410074 786 ntTSL 2 BASIC30.91■■■□□ 2.54
COL11A1P12107 AC116407.1-201ENST00000398832 1599 ntTSL 2 BASIC30.91■■■□□ 2.54
COL11A1P12107 GSC-201ENST00000238558 1264 ntAPPRIS P1 TSL 1 (best) BASIC30.91■■■□□ 2.54
COL11A1P12107 RPS2-202ENST00000526522 924 ntTSL 2 BASIC30.91■■■□□ 2.54
COL11A1P12107 AC108673.1-201ENST00000510422 1159 ntBASIC30.9■■■□□ 2.54
COL11A1P12107 DUX4L29-201ENST00000425409 679 ntBASIC30.89■■■□□ 2.54
COL11A1P12107 AC013394.1-201ENST00000629685 808 ntAPPRIS P1 TSL 5 BASIC30.89■■■□□ 2.54
COL11A1P12107 ECI1-207ENST00000570258 1512 ntAPPRIS ALT2 TSL 5 BASIC30.89■■■□□ 2.54
COL11A1P12107 BTBD19-203ENST00000450269 1572 ntAPPRIS P1 TSL 5 BASIC30.89■■■□□ 2.53
COL11A1P12107 DNLZ-201ENST00000371738 724 ntAPPRIS P1 TSL 1 (best) BASIC30.88■■■□□ 2.53
COL11A1P12107 MBP-237ENST00000579129 1052 ntTSL 5 BASIC30.88■■■□□ 2.53
COL11A1P12107 PCYT2-206ENST00000571105 1628 ntTSL 5 BASIC30.87■■■□□ 2.53
COL11A1P12107 RASSF7-202ENST00000397583 1928 ntAPPRIS P3 TSL 1 (best) BASIC30.87■■■□□ 2.53
COL11A1P12107 WNT5A-AS1-201ENST00000469484 500 ntTSL 3 BASIC30.87■■■□□ 2.53
COL11A1P12107 ARL8A-204ENST00000614750 1727 ntTSL 3 BASIC30.86■■■□□ 2.53
COL11A1P12107 ZBTB12-201ENST00000375527 1875 ntAPPRIS P1 TSL 1 (best) BASIC30.86■■■□□ 2.53
COL11A1P12107 SIAH1-203ENST00000394725 2147 ntAPPRIS P3 TSL 1 (best) BASIC30.86■■■□□ 2.53
COL11A1P12107 HINT2-201ENST00000259667 628 ntAPPRIS P1 TSL 1 (best) BASIC30.84■■■□□ 2.53
COL11A1P12107 MIR6090-201ENST00000622481 60 ntBASIC30.84■■■□□ 2.53
COL11A1P12107 AL451007.3-201ENST00000640271 588 ntAPPRIS P1 BASIC30.84■■■□□ 2.53
COL11A1P12107 AC012615.2-201ENST00000586259 447 ntTSL 4 BASIC30.84■■■□□ 2.53
COL11A1P12107 NOXA1-201ENST00000341349 1678 ntAPPRIS P1 TSL 1 (best) BASIC30.82■■■□□ 2.52
COL11A1P12107 MRPL9-201ENST00000368829 882 ntAPPRIS ALT2 TSL 2 BASIC30.8■■■□□ 2.52
COL11A1P12107 AL589765.4-201ENST00000512280 382 ntTSL 3 BASIC30.8■■■□□ 2.52
COL11A1P12107 UBE2S-203ENST00000589978 496 ntTSL 5 BASIC30.8■■■□□ 2.52
COL11A1P12107 AGPAT2-202ENST00000371696 1512 ntAPPRIS P1 TSL 1 (best) BASIC30.8■■■□□ 2.52
COL11A1P12107 CSPG5-205ENST00000610462 2073 ntTSL 5 BASIC30.8■■■□□ 2.52
COL11A1P12107 OLFM2-201ENST00000264833 2019 ntAPPRIS P1 TSL 1 (best) BASIC30.8■■■□□ 2.52
COL11A1P12107 LAPTM4B-203ENST00000521545 915 ntAPPRIS P1 TSL 1 (best) BASIC30.8■■■□□ 2.52
COL11A1P12107 AC021231.2-201ENST00000594613 730 ntBASIC30.8■■■□□ 2.52
COL11A1P12107 AC187653.1-201ENST00000506382 702 ntAPPRIS P1 TSL 5 BASIC30.79■■■□□ 2.52
COL11A1P12107 CAPNS1-211ENST00000590874 926 ntTSL 5 BASIC30.79■■■□□ 2.52
COL11A1P12107 U2AF2-206ENST00000590551 1104 ntTSL 3 BASIC30.78■■■□□ 2.52
COL11A1P12107 CIB2-204ENST00000557846 934 ntTSL 3 BASIC30.77■■■□□ 2.52
COL11A1P12107 HNRNPAB-206ENST00000506339 1747 ntAPPRIS ALT2 TSL 5 BASIC30.77■■■□□ 2.52
COL11A1P12107 KLC2-205ENST00000394078 1557 ntTSL 5 BASIC30.76■■■□□ 2.51
COL11A1P12107 MISP3-202ENST00000587086 1535 ntAPPRIS P2 TSL 1 (best) BASIC30.75■■■□□ 2.51
COL11A1P12107 NOG-201ENST00000332822 1892 ntAPPRIS P1 BASIC30.75■■■□□ 2.51
COL11A1P12107 RP9P-201ENST00000381639 1303 ntTSL 1 (best) BASIC30.74■■■□□ 2.51
COL11A1P12107 ATP6V1E2-204ENST00000522587 1559 ntAPPRIS P1 TSL 3 BASIC30.72■■■□□ 2.51
COL11A1P12107 MAD2L2-207ENST00000376692 1118 ntAPPRIS P1 TSL 1 (best) BASIC30.72■■■□□ 2.51
COL11A1P12107 ABHD12-201ENST00000339157 2117 ntAPPRIS P1 TSL 2 BASIC30.72■■■□□ 2.51
COL11A1P12107 SULT4A1-201ENST00000330884 2468 ntAPPRIS P1 TSL 1 (best) BASIC30.71■■■□□ 2.51
COL11A1P12107 GRPEL2-204ENST00000513661 546 ntTSL 2 BASIC30.7■■■□□ 2.5
COL11A1P12107 VEGFA-226ENST00000611736 1239 ntTSL 1 (best) BASIC30.7■■■□□ 2.5
COL11A1P12107 GATA6-202ENST00000581694 2057 ntAPPRIS P1 TSL 1 (best) BASIC30.69■■■□□ 2.5
COL11A1P12107 PIK3R2-208ENST00000617642 1446 ntTSL 5 BASIC30.69■■■□□ 2.5
COL11A1P12107 MSRB2-201ENST00000376510 1803 ntAPPRIS P1 TSL 1 (best) BASIC30.69■■■□□ 2.5
COL11A1P12107 GDI1-215ENST00000630693 786 ntTSL 4 BASIC30.68■■■□□ 2.5
COL11A1P12107 BCL7B-201ENST00000223368 1975 ntAPPRIS P1 TSL 1 (best) BASIC30.67■■■□□ 2.5
COL11A1P12107 DTNBP1-202ENST00000344537 1403 ntAPPRIS P1 TSL 1 (best) BASIC30.67■■■□□ 2.5
COL11A1P12107 CR559946.2-201ENST00000623684 991 ntBASIC30.67■■■□□ 2.5
COL11A1P12107 PLEKHJ1-201ENST00000326631 1206 ntAPPRIS P1 TSL 1 (best) BASIC30.66■■■□□ 2.5
COL11A1P12107 DDN-AS1-203ENST00000552284 934 ntTSL 3 BASIC30.66■■■□□ 2.5
COL11A1P12107 MYLIP-202ENST00000356840 1666 ntAPPRIS P1 TSL 1 (best) BASIC30.66■■■□□ 2.5
COL11A1P12107 NIT1-201ENST00000368007 1749 ntTSL 2 BASIC30.65■■■□□ 2.5
COL11A1P12107 MACF1-219ENST00000484793 834 ntTSL 2 BASIC30.64■■■□□ 2.5
COL11A1P12107 CISD3-204ENST00000613478 2074 ntAPPRIS P1 TSL 2 BASIC30.64■■■□□ 2.5
COL11A1P12107 TSPAN11-203ENST00000545802 1649 ntTSL 1 (best) BASIC30.64■■■□□ 2.49
COL11A1P12107 HSD17B1-201ENST00000225929 1265 ntAPPRIS ALT2 TSL 2 BASIC30.63■■■□□ 2.49
COL11A1P12107 BATF3-201ENST00000243440 980 ntAPPRIS P1 TSL 1 (best) BASIC30.63■■■□□ 2.49
COL11A1P12107 AC016575.1-201ENST00000607026 382 ntBASIC30.63■■■□□ 2.49
COL11A1P12107 CHPT1-201ENST00000229266 1585 ntAPPRIS P2 TSL 1 (best) BASIC30.63■■■□□ 2.49
COL11A1P12107 RPS2-201ENST00000343262 985 ntAPPRIS P1 TSL 1 (best) BASIC30.63■■■□□ 2.49
COL11A1P12107 PRSS41-201ENST00000399677 1127 ntAPPRIS P1 TSL 5 BASIC30.62■■■□□ 2.49
COL11A1P12107 TMEM229A-201ENST00000455783 2108 ntAPPRIS P1 BASIC30.62■■■□□ 2.49
COL11A1P12107 RNF166-209ENST00000567844 633 ntTSL 5 BASIC30.62■■■□□ 2.49
COL11A1P12107 HES7-202ENST00000541682 1674 ntAPPRIS ALT1 TSL 1 (best) BASIC30.62■■■□□ 2.49
COL11A1P12107 MIR3648-2-201ENST00000581792 180 ntBASIC30.61■■■□□ 2.49
COL11A1P12107 MIR3648-1-201ENST00000615959 180 ntBASIC30.61■■■□□ 2.49
COL11A1P12107 TRIM52-AS1-203ENST00000509252 529 ntTSL 3 BASIC30.6■■■□□ 2.49
COL11A1P12107 KRT18-201ENST00000388835 1562 ntAPPRIS P1 TSL 1 (best) BASIC30.59■■■□□ 2.49
COL11A1P12107 GLRX5-201ENST00000331334 1564 ntAPPRIS P1 TSL 1 (best) BASIC30.59■■■□□ 2.49
COL11A1P12107 XKR6-201ENST00000297303 1550 ntTSL 1 (best) BASIC30.58■■■□□ 2.49
COL11A1P12107 NPTXR-202ENST00000640136 1503 ntAPPRIS P2 TSL 1 (best) BASIC30.58■■■□□ 2.49
COL11A1P12107 TCAM1P-201ENST00000463377 452 ntTSL 3 BASIC30.57■■■□□ 2.48
COL11A1P12107 U2AF1L5-201ENST00000610664 897 ntAPPRIS P5 TSL 1 (best) BASIC30.57■■■□□ 2.48
COL11A1P12107 PDXP-201ENST00000215904 2010 ntAPPRIS P1 TSL 1 (best) BASIC30.57■■■□□ 2.48
COL11A1P12107 UCK1-201ENST00000372208 2063 ntTSL 1 (best) BASIC30.56■■■□□ 2.48
Retrieved 100 of 98,524 protein–RNA pairs in 14 ms