Protein–RNA interactions for Protein: H3BT56

CHKB-CPT1B, CHKB-CPT1B readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 60 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHKB-CPT1BH3BT56 CHST12-204ENST00000618655 2131 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
CHKB-CPT1BH3BT56 KCNJ12-202ENST00000583088 5425 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
CHKB-CPT1BH3BT56 RAMP2-AS1-202ENST00000589716 1985 ntTSL 5 BASIC15.22■□□□□ 0.03
CHKB-CPT1BH3BT56 RNF130-205ENST00000521389 2263 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
CHKB-CPT1BH3BT56 RRAGC-201ENST00000373001 2732 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
CHKB-CPT1BH3BT56 EDC4-201ENST00000358933 4800 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
CHKB-CPT1BH3BT56 TPI1-201ENST00000229270 1763 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
CHKB-CPT1BH3BT56 STK25-202ENST00000401869 2251 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
CHKB-CPT1BH3BT56 DTX4-201ENST00000227451 5642 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
CHKB-CPT1BH3BT56 NRXN2-201ENST00000265459 6621 ntAPPRIS P3 TSL 5 BASIC15.2■□□□□ 0.02
CHKB-CPT1BH3BT56 ARSB-201ENST00000264914 5327 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
CHKB-CPT1BH3BT56 SORCS2-203ENST00000507866 6152 ntAPPRIS P2 TSL 1 (best) BASIC15.19■□□□□ 0.02
CHKB-CPT1BH3BT56 AGAP1-204ENST00000409457 2165 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
CHKB-CPT1BH3BT56 BTBD7-201ENST00000298896 2621 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
CHKB-CPT1BH3BT56 EMX1-201ENST00000258106 2188 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
CHKB-CPT1BH3BT56 CTBP1-201ENST00000290921 2297 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
CHKB-CPT1BH3BT56 EXOC3L4-201ENST00000380069 2293 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
CHKB-CPT1BH3BT56 ZFYVE9-201ENST00000287727 5194 ntAPPRIS P4 TSL 5 BASIC15.18■□□□□ 0.02
CHKB-CPT1BH3BT56 SDCCAG3-202ENST00000357365 2304 ntAPPRIS P4 TSL 5 BASIC15.18■□□□□ 0.02
CHKB-CPT1BH3BT56 CISD3-204ENST00000613478 2074 ntAPPRIS P1 TSL 2 BASIC15.18■□□□□ 0.02
CHKB-CPT1BH3BT56 DEAF1-201ENST00000382409 2500 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
CHKB-CPT1BH3BT56 SIAH1-203ENST00000394725 2147 ntAPPRIS P3 TSL 1 (best) BASIC15.17■□□□□ 0.02
CHKB-CPT1BH3BT56 BAZ1A-202ENST00000360310 6010 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
CHKB-CPT1BH3BT56 RIMBP3C-202ENST00000433039 5784 ntAPPRIS P2 BASIC15.16■□□□□ 0.02
CHKB-CPT1BH3BT56 CTDP1-208ENST00000613122 5866 ntAPPRIS P3 TSL 1 (best) BASIC15.16■□□□□ 0.02
CHKB-CPT1BH3BT56 TUSC1-201ENST00000358022 2052 ntAPPRIS P1 BASIC15.16■□□□□ 0.02
CHKB-CPT1BH3BT56 ATP6V0A2-201ENST00000330342 6542 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
CHKB-CPT1BH3BT56 C7orf50-202ENST00000397098 2131 ntAPPRIS P2 TSL 1 (best) BASIC15.16■□□□□ 0.02
CHKB-CPT1BH3BT56 NES-201ENST00000368223 5558 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
CHKB-CPT1BH3BT56 FZD8-201ENST00000374694 4030 ntAPPRIS P1 BASIC15.15■□□□□ 0.02
CHKB-CPT1BH3BT56 TBC1D12-201ENST00000225235 5272 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
CHKB-CPT1BH3BT56 CTDNEP1-208ENST00000573600 1724 ntAPPRIS P1 TSL 5 BASIC15.14■□□□□ 0.01
CHKB-CPT1BH3BT56 OBSL1-204ENST00000404537 5841 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
CHKB-CPT1BH3BT56 CACNA1I-204ENST00000407673 5952 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
CHKB-CPT1BH3BT56 HAPLN2-201ENST00000255039 1771 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
CHKB-CPT1BH3BT56 KCNJ4-201ENST00000303592 2065 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
CHKB-CPT1BH3BT56 GATA3-AS1-201ENST00000355358 2214 ntTSL 2 BASIC15.13■□□□□ 0.01
CHKB-CPT1BH3BT56 KCNQ3-202ENST00000519445 2801 ntAPPRIS ALT2 TSL 5 BASIC15.12■□□□□ 0.01
CHKB-CPT1BH3BT56 POU3F3-201ENST00000361360 3064 ntAPPRIS P1 BASIC15.12■□□□□ 0.01
CHKB-CPT1BH3BT56 MATK-201ENST00000310132 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
CHKB-CPT1BH3BT56 ILK-212ENST00000532063 1617 ntTSL 2 BASIC15.12■□□□□ 0.01
CHKB-CPT1BH3BT56 USP12-201ENST00000282344 4511 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
CHKB-CPT1BH3BT56 AC138932.1-201ENST00000534164 6830 ntBASIC15.12■□□□□ 0.01
CHKB-CPT1BH3BT56 SHF-206ENST00000560471 2499 ntTSL 5 BASIC15.11■□□□□ 0.01
CHKB-CPT1BH3BT56 KHDRBS3-201ENST00000355849 1977 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
CHKB-CPT1BH3BT56 ADGRA2-201ENST00000315215 6270 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
CHKB-CPT1BH3BT56 FBRS-202ENST00000356166 5200 ntTSL 5 BASIC15.1■□□□□ 0.01
CHKB-CPT1BH3BT56 RMND5A-201ENST00000283632 6301 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
CHKB-CPT1BH3BT56 ERLIN1-203ENST00000421367 5792 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
CHKB-CPT1BH3BT56 NADK2-202ENST00000381937 2243 ntAPPRIS P1 TSL 2 BASIC15.09■□□□□ 0.01
CHKB-CPT1BH3BT56 KLF13-201ENST00000307145 6825 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
CHKB-CPT1BH3BT56 LMO2-202ENST00000395833 1687 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
CHKB-CPT1BH3BT56 RASGRP1-201ENST00000310803 5023 ntAPPRIS P2 TSL 1 (best) BASIC15.08■□□□□ 0.01
CHKB-CPT1BH3BT56 RASGRP1-204ENST00000539159 5021 ntAPPRIS ALT1 TSL 5 BASIC15.08■□□□□ 0.01
CHKB-CPT1BH3BT56 CSNK1E-203ENST00000396832 2791 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0.01
CHKB-CPT1BH3BT56 SKOR2-203ENST00000620245 3048 ntAPPRIS ALT2 TSL 5 BASIC15.08■□□□□ 0
CHKB-CPT1BH3BT56 OTUD5-203ENST00000396743 2682 ntAPPRIS ALT1 TSL 1 (best) BASIC15.08■□□□□ 0
CHKB-CPT1BH3BT56 ZNF510-203ENST00000375231 5616 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
CHKB-CPT1BH3BT56 BRPF3-202ENST00000357641 6052 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
CHKB-CPT1BH3BT56 NCKAP1-201ENST00000360982 4989 ntTSL 1 (best) BASIC15.07■□□□□ 0
CHKB-CPT1BH3BT56 PDXP-201ENST00000215904 2010 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
CHKB-CPT1BH3BT56 CACNA1B-204ENST00000371357 9642 ntAPPRIS ALT2 TSL 5 BASIC15.06■□□□□ 0
CHKB-CPT1BH3BT56 C2CD2-202ENST00000380486 6345 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 0
CHKB-CPT1BH3BT56 INPPL1-201ENST00000298229 4733 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
CHKB-CPT1BH3BT56 FZD2-201ENST00000315323 2112 ntAPPRIS P1 BASIC15.05■□□□□ -0
CHKB-CPT1BH3BT56 BCL11B-203ENST00000443726 2599 ntAPPRIS ALT2 TSL 5 BASIC15.05■□□□□ -0
CHKB-CPT1BH3BT56 SH2B1-202ENST00000337120 6043 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
CHKB-CPT1BH3BT56 C11orf68-201ENST00000438576 1619 ntAPPRIS ALT2 TSL 2 BASIC15.04■□□□□ -0
CHKB-CPT1BH3BT56 GLTP-201ENST00000318348 2356 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
CHKB-CPT1BH3BT56 ADGRB1-201ENST00000323289 5527 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
CHKB-CPT1BH3BT56 UBE2K-201ENST00000261427 5245 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
CHKB-CPT1BH3BT56 TMEM268-202ENST00000374049 4578 ntAPPRIS ALT1 TSL 5 BASIC15.02□□□□□ -0.01
CHKB-CPT1BH3BT56 SDK1-202ENST00000404826 10397 ntAPPRIS P2 TSL 1 (best) BASIC15.01□□□□□ -0.01
CHKB-CPT1BH3BT56 HIC1-207ENST00000619757 6711 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
CHKB-CPT1BH3BT56 ING1-201ENST00000333219 5119 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
CHKB-CPT1BH3BT56 FOXA2-202ENST00000419308 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC15.01□□□□□ -0.01
CHKB-CPT1BH3BT56 SMAD4-201ENST00000342988 8769 ntAPPRIS P1 TSL 5 BASIC15.01□□□□□ -0.01
CHKB-CPT1BH3BT56 MYH14-206ENST00000596571 5988 ntAPPRIS ALT2 TSL 5 BASIC15.01□□□□□ -0.01
CHKB-CPT1BH3BT56 EMID1-201ENST00000334018 2173 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
CHKB-CPT1BH3BT56 INPP4A-201ENST00000074304 6752 ntTSL 5 BASIC15.01□□□□□ -0.01
CHKB-CPT1BH3BT56 CCSAP-203ENST00000366687 5089 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
CHKB-CPT1BH3BT56 MGEA5-205ENST00000439817 5043 ntTSL 5 BASIC15.01□□□□□ -0.01
CHKB-CPT1BH3BT56 EP300-201ENST00000263253 9587 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
CHKB-CPT1BH3BT56 ADD1-202ENST00000355842 4743 ntTSL 1 (best) BASIC15□□□□□ -0.01
CHKB-CPT1BH3BT56 ESRRA-203ENST00000406310 2218 ntAPPRIS ALT1 TSL 1 (best) BASIC15□□□□□ -0.01
CHKB-CPT1BH3BT56 ZBTB7A-201ENST00000322357 5422 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
CHKB-CPT1BH3BT56 KCNQ5-201ENST00000342056 6688 ntAPPRIS ALT1 TSL 5 BASIC15□□□□□ -0.01
CHKB-CPT1BH3BT56 ZNF276-202ENST00000443381 2267 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
CHKB-CPT1BH3BT56 ROR1-201ENST00000371079 5832 ntAPPRIS P2 TSL 1 (best) BASIC15□□□□□ -0.01
CHKB-CPT1BH3BT56 MYH7B-201ENST00000262873 6293 ntAPPRIS P2 TSL 1 (best) BASIC15□□□□□ -0.01
CHKB-CPT1BH3BT56 COL13A1-203ENST00000398969 2267 ntAPPRIS ALT2 TSL 5 BASIC14.99□□□□□ -0.01
CHKB-CPT1BH3BT56 TESK1-206ENST00000620767 2438 ntAPPRIS P1 TSL 5 BASIC14.99□□□□□ -0.01
CHKB-CPT1BH3BT56 KIAA1456-206ENST00000528753 2392 ntTSL 2 BASIC14.98□□□□□ -0.01
CHKB-CPT1BH3BT56 STIM2-204ENST00000467087 5154 ntAPPRIS ALT2 TSL 1 (best) BASIC14.98□□□□□ -0.01
CHKB-CPT1BH3BT56 METRNL-201ENST00000320095 1605 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
CHKB-CPT1BH3BT56 FLT1-207ENST00000615840 6453 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
CHKB-CPT1BH3BT56 FGFR1-238ENST00000532791 5590 ntAPPRIS ALT1 TSL 5 BASIC14.96□□□□□ -0.01
CHKB-CPT1BH3BT56 TTC34-201ENST00000401095 8814 ntAPPRIS ALT2 TSL 5 BASIC14.96□□□□□ -0.01
CHKB-CPT1BH3BT56 GLT8D1-201ENST00000266014 1849 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
CHKB-CPT1BH3BT56 EPHA10-202ENST00000373048 5425 ntAPPRIS P2 TSL 5 BASIC14.95□□□□□ -0.02
Retrieved 100 of 98,524 protein–RNA pairs in 38 ms