Protein–RNA interactions for Protein: H3BT56

CHKB-CPT1B, CHKB-CPT1B readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 60 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHKB-CPT1BH3BT56 FBRSL1-201ENST00000434748 5568 ntAPPRIS P2 TSL 1 (best) BASIC22.85■■□□□ 1.25
CHKB-CPT1BH3BT56 TNK2-201ENST00000333602 5270 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
CHKB-CPT1BH3BT56 ABL1-201ENST00000318560 5766 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
CHKB-CPT1BH3BT56 AGAP1-202ENST00000336665 5427 ntAPPRIS P3 TSL 1 (best) BASIC19.85■□□□□ 0.77
CHKB-CPT1BH3BT56 LZTS2-201ENST00000370220 5741 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
CHKB-CPT1BH3BT56 PIP4K2B-204ENST00000619039 5734 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
CHKB-CPT1BH3BT56 JAG2-201ENST00000331782 5835 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
CHKB-CPT1BH3BT56 PAPD7-201ENST00000230859 5459 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
CHKB-CPT1BH3BT56 CIC-201ENST00000160740 6111 ntAPPRIS ALT1 TSL 5 BASIC19.24■□□□□ 0.67
CHKB-CPT1BH3BT56 MBD2-201ENST00000256429 5188 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
CHKB-CPT1BH3BT56 MAGI2-211ENST00000535697 6146 ntTSL 5 BASIC18.97■□□□□ 0.63
CHKB-CPT1BH3BT56 SLC12A2-202ENST00000343225 5509 ntAPPRIS ALT2 TSL 1 (best) BASIC18.95■□□□□ 0.62
CHKB-CPT1BH3BT56 ZBTB10-204ENST00000455036 5458 ntAPPRIS P3 TSL 2 BASIC18.92■□□□□ 0.62
CHKB-CPT1BH3BT56 MAGI2-215ENST00000628980 6212 ntTSL 5 BASIC18.85■□□□□ 0.61
CHKB-CPT1BH3BT56 AC116565.1-201ENST00000610212 2421 ntAPPRIS P1 BASIC18.79■□□□□ 0.6
CHKB-CPT1BH3BT56 ARHGEF7-206ENST00000375741 5525 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
CHKB-CPT1BH3BT56 SPIRE1-202ENST00000409402 5665 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
CHKB-CPT1BH3BT56 CACNA1H-201ENST00000348261 8208 ntAPPRIS P4 TSL 1 (best) BASIC18.59■□□□□ 0.57
CHKB-CPT1BH3BT56 ARHGEF7-205ENST00000375739 5375 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
CHKB-CPT1BH3BT56 ADGRB2-204ENST00000398542 5176 ntTSL 5 BASIC18.52■□□□□ 0.55
CHKB-CPT1BH3BT56 GNPTAB-201ENST00000299314 5701 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
CHKB-CPT1BH3BT56 FBXO45-201ENST00000311630 5899 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
CHKB-CPT1BH3BT56 IFFO2-203ENST00000455833 6188 ntAPPRIS P1 TSL 5 BASIC18.48■□□□□ 0.55
CHKB-CPT1BH3BT56 FOXG1-201ENST00000313071 4890 ntAPPRIS P1 BASIC18.46■□□□□ 0.55
CHKB-CPT1BH3BT56 FOXD1-202ENST00000615637 2272 ntAPPRIS P1 BASIC18.44■□□□□ 0.54
CHKB-CPT1BH3BT56 RAPGEF1-203ENST00000372195 6256 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
CHKB-CPT1BH3BT56 PLPPR3-204ENST00000520876 2328 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.51
CHKB-CPT1BH3BT56 ZFPM1-201ENST00000319555 5380 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
CHKB-CPT1BH3BT56 CADPS-203ENST00000383710 5471 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
CHKB-CPT1BH3BT56 HECA-201ENST00000367658 5614 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
CHKB-CPT1BH3BT56 ZCCHC2-201ENST00000269499 5959 ntAPPRIS P2 TSL 5 BASIC18.05■□□□□ 0.48
CHKB-CPT1BH3BT56 NPAS3-201ENST00000346562 5847 ntAPPRIS P3 TSL 1 (best) BASIC18.03■□□□□ 0.48
CHKB-CPT1BH3BT56 SPIRE1-203ENST00000410092 5533 ntAPPRIS P3 TSL 1 (best) BASIC18■□□□□ 0.47
CHKB-CPT1BH3BT56 DSG2-201ENST00000261590 5831 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
CHKB-CPT1BH3BT56 DPY19L1-209ENST00000638088 5075 ntAPPRIS ALT2 TSL 5 BASIC17.87■□□□□ 0.45
CHKB-CPT1BH3BT56 TGFBRAP1-202ENST00000393359 5979 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
CHKB-CPT1BH3BT56 ZSWIM6-201ENST00000252744 5501 ntAPPRIS P1 TSL 5 BASIC17.82■□□□□ 0.44
CHKB-CPT1BH3BT56 RAB12-201ENST00000329286 2137 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CHKB-CPT1BH3BT56 PPP2CB-201ENST00000221138 2006 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CHKB-CPT1BH3BT56 PCYT2-203ENST00000538936 5147 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
CHKB-CPT1BH3BT56 DLG3-203ENST00000374360 5905 ntAPPRIS P2 TSL 1 (best) BASIC17.76■□□□□ 0.43
CHKB-CPT1BH3BT56 EPB41L4B-202ENST00000374566 5800 ntAPPRIS P4 TSL 1 (best) BASIC17.75■□□□□ 0.43
CHKB-CPT1BH3BT56 QKI-207ENST00000453779 5685 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
CHKB-CPT1BH3BT56 C11orf63-202ENST00000307257 1964 ntTSL 2 BASIC17.73■□□□□ 0.43
CHKB-CPT1BH3BT56 JAG2-202ENST00000347004 5720 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
CHKB-CPT1BH3BT56 CRIM1-201ENST00000280527 5912 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
CHKB-CPT1BH3BT56 C16orf72-201ENST00000327827 5953 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
CHKB-CPT1BH3BT56 IFNGR2-201ENST00000290219 2221 ntAPPRIS P3 TSL 1 (best) BASIC17.6■□□□□ 0.41
CHKB-CPT1BH3BT56 MAGI2-201ENST00000354212 6880 ntAPPRIS P3 TSL 1 (best) BASIC17.59■□□□□ 0.41
CHKB-CPT1BH3BT56 HOMER1-202ENST00000334082 5881 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
CHKB-CPT1BH3BT56 RAP2A-201ENST00000245304 5487 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
CHKB-CPT1BH3BT56 ONECUT3-201ENST00000382349 8318 ntAPPRIS P1 TSL 5 BASIC17.56■□□□□ 0.4
CHKB-CPT1BH3BT56 KCNC3-201ENST00000376959 5447 ntAPPRIS ALT2 TSL 5 BASIC17.51■□□□□ 0.39
CHKB-CPT1BH3BT56 NAT8L-202ENST00000423729 5870 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
CHKB-CPT1BH3BT56 KHSRP-213ENST00000619396 2226 ntAPPRIS ALT2 TSL 5 BASIC17.44■□□□□ 0.38
CHKB-CPT1BH3BT56 LMTK3-202ENST00000600059 5113 ntAPPRIS ALT2 TSL 2 BASIC17.43■□□□□ 0.38
CHKB-CPT1BH3BT56 MAGI2-217ENST00000629359 6704 ntTSL 5 BASIC17.42■□□□□ 0.38
CHKB-CPT1BH3BT56 TBL1X-201ENST00000217964 5871 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
CHKB-CPT1BH3BT56 SEPT3-204ENST00000406029 1866 ntTSL 5 BASIC17.42■□□□□ 0.38
CHKB-CPT1BH3BT56 MAF-202ENST00000393350 6384 ntAPPRIS ALT2 BASIC17.42■□□□□ 0.38
CHKB-CPT1BH3BT56 GPI-201ENST00000356487 2210 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
CHKB-CPT1BH3BT56 KCNMA1-283ENST00000640523 5425 ntAPPRIS ALT2 TSL 5 BASIC17.37■□□□□ 0.37
CHKB-CPT1BH3BT56 LMTK3-201ENST00000270238 4972 ntAPPRIS P2 TSL 1 (best) BASIC17.36■□□□□ 0.37
CHKB-CPT1BH3BT56 ACOT7-209ENST00000545482 1804 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.36
CHKB-CPT1BH3BT56 OSBP-201ENST00000263847 5083 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
CHKB-CPT1BH3BT56 CACNA1H-210ENST00000638323 8048 ntAPPRIS ALT2 TSL 5 BASIC17.29■□□□□ 0.36
CHKB-CPT1BH3BT56 TPRG1L-202ENST00000378344 2414 ntAPPRIS P1 TSL 2 BASIC17.27■□□□□ 0.36
CHKB-CPT1BH3BT56 PHLPP1-201ENST00000262719 6390 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CHKB-CPT1BH3BT56 CACNA1H-202ENST00000358590 8069 ntAPPRIS ALT2 TSL 5 BASIC17.22■□□□□ 0.35
CHKB-CPT1BH3BT56 AEBP2-204ENST00000398864 5099 ntAPPRIS P4 TSL 1 (best) BASIC17.16■□□□□ 0.34
CHKB-CPT1BH3BT56 PTPRM-201ENST00000332175 6095 ntAPPRIS P3 TSL 1 (best) BASIC17.14■□□□□ 0.33
CHKB-CPT1BH3BT56 TGIF1-202ENST00000343820 2076 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CHKB-CPT1BH3BT56 C11orf95-202ENST00000433688 5716 ntAPPRIS P1 TSL 5 BASIC17.08■□□□□ 0.33
CHKB-CPT1BH3BT56 ADRA1D-201ENST00000379453 2728 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
CHKB-CPT1BH3BT56 TPRG1L-201ENST00000344579 2189 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
CHKB-CPT1BH3BT56 PLD4-201ENST00000392593 6515 ntAPPRIS P3 TSL 1 (best) BASIC17.03■□□□□ 0.32
CHKB-CPT1BH3BT56 SLC12A2-201ENST00000262461 6885 ntAPPRIS P3 TSL 1 (best) BASIC17.02■□□□□ 0.31
CHKB-CPT1BH3BT56 TARBP1-201ENST00000040877 5130 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
CHKB-CPT1BH3BT56 REPS2-202ENST00000357277 7953 ntAPPRIS P3 TSL 1 (best) BASIC16.99■□□□□ 0.31
CHKB-CPT1BH3BT56 FOXP4-203ENST00000373060 5948 ntTSL 5 BASIC16.99■□□□□ 0.31
CHKB-CPT1BH3BT56 FOXP4-204ENST00000373063 5910 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
CHKB-CPT1BH3BT56 TM9SF3-201ENST00000371142 6141 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
CHKB-CPT1BH3BT56 MAGI2-202ENST00000419488 6800 ntAPPRIS ALT2 TSL 1 (best) BASIC16.97■□□□□ 0.31
CHKB-CPT1BH3BT56 RAB11FIP4-211ENST00000621161 8628 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
CHKB-CPT1BH3BT56 CHSY1-201ENST00000254190 4550 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
CHKB-CPT1BH3BT56 SLCO3A1-201ENST00000318445 5115 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
CHKB-CPT1BH3BT56 AC113189.4-201ENST00000575331 5553 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
CHKB-CPT1BH3BT56 GRIN2D-201ENST00000263269 5093 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
CHKB-CPT1BH3BT56 SHC2-201ENST00000264554 2494 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
CHKB-CPT1BH3BT56 CCNG2-201ENST00000316355 5526 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
CHKB-CPT1BH3BT56 AC091230.1-202ENST00000564823 5356 ntTSL 2 BASIC16.92■□□□□ 0.3
CHKB-CPT1BH3BT56 GGA1-204ENST00000381756 2107 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
CHKB-CPT1BH3BT56 DENND5A-201ENST00000328194 5031 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
CHKB-CPT1BH3BT56 PPP2R2D-201ENST00000455566 5738 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
CHKB-CPT1BH3BT56 ARID1B-220ENST00000636930 8246 ntAPPRIS ALT2 TSL 2 BASIC16.88■□□□□ 0.29
CHKB-CPT1BH3BT56 YAP1-202ENST00000345877 5284 ntTSL 5 BASIC16.86■□□□□ 0.29
CHKB-CPT1BH3BT56 FOXO1-201ENST00000379561 5735 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
CHKB-CPT1BH3BT56 ATP9A-202ENST00000338821 8106 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
CHKB-CPT1BH3BT56 TOP2B-204ENST00000435706 5389 ntAPPRIS P3 TSL 1 (best) BASIC16.83■□□□□ 0.29
CHKB-CPT1BH3BT56 ACTG1-210ENST00000575842 2256 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 11.9 ms