Protein–RNA interactions for Protein: A0A0B4J248

TRAV1-1, T-cell receptor alpha variable 1-1 (Fragment), humanhuman

Predictions only

Length 108 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV1-1A0A0B4J248 EFEMP2-201ENST00000307998 2034 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
TRAV1-1A0A0B4J248 LMO2-201ENST00000257818 2294 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
TRAV1-1A0A0B4J248 MRAP2-201ENST00000257776 2153 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
TRAV1-1A0A0B4J248 GKAP1-203ENST00000376371 1778 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
TRAV1-1A0A0B4J248 FLJ37453-201ENST00000317122 2473 ntTSL 2 BASIC21.06■□□□□ 0.96
TRAV1-1A0A0B4J248 VEGFC-202ENST00000618562 2064 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
TRAV1-1A0A0B4J248 HOXB3-210ENST00000489475 1845 ntTSL 2 BASIC21.05■□□□□ 0.96
TRAV1-1A0A0B4J248 GIPC1-202ENST00000393028 1483 ntTSL 3 BASIC21.05■□□□□ 0.96
TRAV1-1A0A0B4J248 HDGF-210ENST00000537739 2073 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
TRAV1-1A0A0B4J248 PEA15-201ENST00000360472 2471 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
TRAV1-1A0A0B4J248 AL121749.1-202ENST00000609313 2153 ntBASIC21.04■□□□□ 0.96
TRAV1-1A0A0B4J248 KCTD17-209ENST00000610767 1502 ntAPPRIS ALT2 TSL 3 BASIC21.03■□□□□ 0.96
TRAV1-1A0A0B4J248 AC135731.1-201ENST00000569415 2548 ntBASIC21.02■□□□□ 0.96
TRAV1-1A0A0B4J248 CMTM4-202ENST00000394106 1187 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
TRAV1-1A0A0B4J248 LY6K-202ENST00000518841 855 ntAPPRIS ALT2 TSL 2 BASIC21.02■□□□□ 0.96
TRAV1-1A0A0B4J248 CMTM4-204ENST00000563952 1023 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
TRAV1-1A0A0B4J248 HAND2-201ENST00000359562 2780 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.95
TRAV1-1A0A0B4J248 MAPKAPK2-201ENST00000294981 2171 ntTSL 1 (best) BASIC21.02■□□□□ 0.95
TRAV1-1A0A0B4J248 CAPNS1-204ENST00000587718 1558 ntAPPRIS ALT2 TSL 1 (best) BASIC21.02■□□□□ 0.95
TRAV1-1A0A0B4J248 TLE6-201ENST00000246112 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC21.01■□□□□ 0.95
TRAV1-1A0A0B4J248 CMAS-201ENST00000229329 1787 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
TRAV1-1A0A0B4J248 THRA-204ENST00000546243 1909 ntAPPRIS P1 TSL 2 BASIC21■□□□□ 0.95
TRAV1-1A0A0B4J248 TM6SF1-202ENST00000322019 2074 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
TRAV1-1A0A0B4J248 SHF-207ENST00000560540 2062 ntTSL 5 BASIC21■□□□□ 0.95
TRAV1-1A0A0B4J248 WSB2-201ENST00000315436 2646 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
TRAV1-1A0A0B4J248 TNIP2-201ENST00000315423 1974 ntAPPRIS P3 TSL 1 (best) BASIC20.98■□□□□ 0.95
TRAV1-1A0A0B4J248 PGM5-201ENST00000396392 1782 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
TRAV1-1A0A0B4J248 SPATA5L1-208ENST00000638607 1863 ntTSL 2 BASIC20.96■□□□□ 0.95
TRAV1-1A0A0B4J248 HNRNPAB-202ENST00000358344 1796 ntAPPRIS P4 TSL 1 (best) BASIC20.95■□□□□ 0.94
TRAV1-1A0A0B4J248 MTCH1-202ENST00000373627 2057 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
TRAV1-1A0A0B4J248 AHSA2-201ENST00000357022 2437 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
TRAV1-1A0A0B4J248 CNIH2-203ENST00000528852 1524 ntAPPRIS ALT1 TSL 1 (best) BASIC20.95■□□□□ 0.94
TRAV1-1A0A0B4J248 TMEM187-201ENST00000369982 1880 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
TRAV1-1A0A0B4J248 NFYB-205ENST00000551727 1727 ntAPPRIS P1 TSL 3 BASIC20.95■□□□□ 0.94
TRAV1-1A0A0B4J248 WTAP-206ENST00000621533 2109 ntAPPRIS P1 TSL 2 BASIC20.95■□□□□ 0.94
TRAV1-1A0A0B4J248 PHF23-205ENST00000571362 1768 ntTSL 2 BASIC20.95■□□□□ 0.94
TRAV1-1A0A0B4J248 RAB26-201ENST00000210187 1675 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
TRAV1-1A0A0B4J248 LRRC61-202ENST00000359623 1877 ntAPPRIS P1 TSL 2 BASIC20.94■□□□□ 0.94
TRAV1-1A0A0B4J248 MAPK1-202ENST00000398822 1487 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
TRAV1-1A0A0B4J248 CTDNEP1-201ENST00000318988 1549 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
TRAV1-1A0A0B4J248 TAZ-205ENST00000475699 1862 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
TRAV1-1A0A0B4J248 CPNE1-202ENST00000352393 2147 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
TRAV1-1A0A0B4J248 AGAP1-202ENST00000336665 5427 ntAPPRIS P3 TSL 1 (best) BASIC20.92■□□□□ 0.94
TRAV1-1A0A0B4J248 NOG-201ENST00000332822 1892 ntAPPRIS P1 BASIC20.92■□□□□ 0.94
TRAV1-1A0A0B4J248 OTUD5-208ENST00000610466 2487 ntTSL 5 BASIC20.92■□□□□ 0.94
TRAV1-1A0A0B4J248 CCKBR-201ENST00000334619 2121 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
TRAV1-1A0A0B4J248 FGF18-201ENST00000274625 1986 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
TRAV1-1A0A0B4J248 FAM107B-205ENST00000378467 2374 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
TRAV1-1A0A0B4J248 AC015813.7-201ENST00000623294 581 ntBASIC20.89■□□□□ 0.93
TRAV1-1A0A0B4J248 FADD-201ENST00000301838 1841 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
TRAV1-1A0A0B4J248 SCCPDH-201ENST00000366510 2503 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
TRAV1-1A0A0B4J248 SLC12A2-202ENST00000343225 5509 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
TRAV1-1A0A0B4J248 AL135925.1-201ENST00000605920 1701 ntBASIC20.87■□□□□ 0.93
TRAV1-1A0A0B4J248 PLEKHF1-201ENST00000436066 2084 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
TRAV1-1A0A0B4J248 NREP-202ENST00000379671 2581 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
TRAV1-1A0A0B4J248 TMEM185A-207ENST00000600449 2840 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
TRAV1-1A0A0B4J248 INO80B-203ENST00000409917 796 ntTSL 2 BASIC20.86■□□□□ 0.93
TRAV1-1A0A0B4J248 RNF130-201ENST00000261947 1766 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
TRAV1-1A0A0B4J248 IHH-201ENST00000295731 2023 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
TRAV1-1A0A0B4J248 DRD5P2-201ENST00000421395 2012 ntBASIC20.85■□□□□ 0.93
TRAV1-1A0A0B4J248 REXO4-202ENST00000371942 2360 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
TRAV1-1A0A0B4J248 ARTN-203ENST00000414809 1943 ntAPPRIS P4 TSL 3 BASIC20.85■□□□□ 0.93
TRAV1-1A0A0B4J248 TNFSF12-201ENST00000293825 1553 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
TRAV1-1A0A0B4J248 ZNF768-201ENST00000380412 2315 ntAPPRIS P2 TSL 1 (best) BASIC20.84■□□□□ 0.93
TRAV1-1A0A0B4J248 CYB5R3-201ENST00000352397 2124 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
TRAV1-1A0A0B4J248 YAP1-204ENST00000526343 2393 ntTSL 5 BASIC20.83■□□□□ 0.93
TRAV1-1A0A0B4J248 DEAF1-201ENST00000382409 2500 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
TRAV1-1A0A0B4J248 RCAN1-201ENST00000313806 2490 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
TRAV1-1A0A0B4J248 ABL1-201ENST00000318560 5766 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
TRAV1-1A0A0B4J248 MSX1-201ENST00000382723 1939 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
TRAV1-1A0A0B4J248 VIPR2-203ENST00000402066 1926 ntAPPRIS ALT2 TSL 5 BASIC20.83■□□□□ 0.93
TRAV1-1A0A0B4J248 BTBD7-201ENST00000298896 2621 ntTSL 1 (best) BASIC20.83■□□□□ 0.92
TRAV1-1A0A0B4J248 HDGF-201ENST00000357325 2380 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
TRAV1-1A0A0B4J248 MAPK4-202ENST00000540640 1576 ntTSL 2 BASIC20.82■□□□□ 0.92
TRAV1-1A0A0B4J248 RHOQ-201ENST00000238738 2975 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
TRAV1-1A0A0B4J248 RASSF5-204ENST00000580449 1932 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
TRAV1-1A0A0B4J248 HNRNPAB-204ENST00000504898 1785 ntAPPRIS P4 TSL 1 (best) BASIC20.82■□□□□ 0.92
TRAV1-1A0A0B4J248 CARM1-202ENST00000344150 2722 ntAPPRIS ALT2 TSL 5 BASIC20.82■□□□□ 0.92
TRAV1-1A0A0B4J248 TMEM55B-201ENST00000250489 1961 ntAPPRIS P3 TSL 1 (best) BASIC20.81■□□□□ 0.92
TRAV1-1A0A0B4J248 FRAT2-201ENST00000371019 2213 ntAPPRIS P1 BASIC20.81■□□□□ 0.92
TRAV1-1A0A0B4J248 PIP4K2B-204ENST00000619039 5734 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
TRAV1-1A0A0B4J248 TCF24-201ENST00000563496 2450 ntAPPRIS P1 TSL 5 BASIC20.8■□□□□ 0.92
TRAV1-1A0A0B4J248 AL357033.3-201ENST00000620143 614 ntTSL 3 BASIC20.8■□□□□ 0.92
TRAV1-1A0A0B4J248 RASSF7-201ENST00000397582 1731 ntAPPRIS ALT2 TSL 2 BASIC20.8■□□□□ 0.92
TRAV1-1A0A0B4J248 RASSF8-202ENST00000381352 2320 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
TRAV1-1A0A0B4J248 HYAL2-202ENST00000395139 2136 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
TRAV1-1A0A0B4J248 PCSK6-216ENST00000615296 2921 ntTSL 5 BASIC20.78■□□□□ 0.92
TRAV1-1A0A0B4J248 EVC-203ENST00000509451 1960 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
TRAV1-1A0A0B4J248 GALR3-201ENST00000249041 1157 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
TRAV1-1A0A0B4J248 AL139393.2-201ENST00000608721 2025 ntBASIC20.78■□□□□ 0.92
TRAV1-1A0A0B4J248 RDX-210ENST00000530301 1549 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
TRAV1-1A0A0B4J248 GIPC1-201ENST00000345425 1782 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
TRAV1-1A0A0B4J248 COMMD7-201ENST00000278980 1900 ntAPPRIS P3 TSL 1 (best) BASIC20.77■□□□□ 0.92
TRAV1-1A0A0B4J248 ESRRA-203ENST00000406310 2218 ntAPPRIS ALT1 TSL 1 (best) BASIC20.77■□□□□ 0.91
TRAV1-1A0A0B4J248 HES7-202ENST00000541682 1674 ntAPPRIS ALT1 TSL 1 (best) BASIC20.77■□□□□ 0.91
TRAV1-1A0A0B4J248 RHEB-201ENST00000262187 2075 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
TRAV1-1A0A0B4J248 CCM2L-201ENST00000262659 2523 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
TRAV1-1A0A0B4J248 RAB40C-204ENST00000538492 2569 ntAPPRIS P1 TSL 2 BASIC20.76■□□□□ 0.91
TRAV1-1A0A0B4J248 ATPAF1-202ENST00000371937 1827 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
TRAV1-1A0A0B4J248 SERPING1-205ENST00000403558 2231 ntTSL 5 BASIC20.76■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 207.3 ms