Protein–RNA interactions for Protein: Q99626

CDX2, Homeobox protein CDX-2, humanhuman

Predicted RBP Predictions only

Length 313 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX2Q99626 GSC-201ENST00000238558 1264 ntAPPRIS P1 TSL 1 (best) BASIC29.82■■■□□ 2.36
CDX2Q99626 TCEA2-202ENST00000343484 1235 ntAPPRIS P1 TSL 1 (best) BASIC29.82■■■□□ 2.36
CDX2Q99626 KRT18-201ENST00000388835 1562 ntAPPRIS P1 TSL 1 (best) BASIC29.8■■■□□ 2.36
CDX2Q99626 CLDND1-226ENST00000513287 999 ntAPPRIS P1 TSL 2 BASIC29.79■■■□□ 2.36
CDX2Q99626 AC016575.1-201ENST00000607026 382 ntBASIC29.79■■■□□ 2.36
CDX2Q99626 DENR-202ENST00000455982 1052 ntTSL 5 BASIC29.78■■■□□ 2.36
CDX2Q99626 BRF1-213ENST00000548421 1452 ntTSL 1 (best) BASIC29.77■■■□□ 2.36
CDX2Q99626 VAX2-201ENST00000234392 1147 ntAPPRIS P1 TSL 1 (best) BASIC29.77■■■□□ 2.36
CDX2Q99626 MIR3648-2-201ENST00000581792 180 ntBASIC29.76■■■□□ 2.35
CDX2Q99626 MIR3648-1-201ENST00000615959 180 ntBASIC29.76■■■□□ 2.35
CDX2Q99626 ABHD17AP3-201ENST00000503096 1137 ntBASIC29.74■■■□□ 2.35
CDX2Q99626 GDI1-215ENST00000630693 786 ntTSL 4 BASIC29.73■■■□□ 2.35
CDX2Q99626 AC116407.1-201ENST00000398832 1599 ntTSL 2 BASIC29.73■■■□□ 2.35
CDX2Q99626 ILK-212ENST00000532063 1617 ntTSL 2 BASIC29.72■■■□□ 2.35
CDX2Q99626 RNF166-209ENST00000567844 633 ntTSL 5 BASIC29.72■■■□□ 2.35
CDX2Q99626 PPP1R14B-201ENST00000309318 982 ntAPPRIS P1 TSL 1 (best) BASIC29.71■■■□□ 2.35
CDX2Q99626 INPP5A-202ENST00000368593 1432 ntTSL 1 (best) BASIC29.71■■■□□ 2.35
CDX2Q99626 TSEN34-203ENST00000396388 1349 ntAPPRIS P1 TSL 1 (best) BASIC29.71■■■□□ 2.35
CDX2Q99626 GIPC1-202ENST00000393028 1483 ntTSL 3 BASIC29.7■■■□□ 2.35
CDX2Q99626 LANCL3-203ENST00000614025 1469 ntTSL 2 BASIC29.68■■■□□ 2.34
CDX2Q99626 AC021231.2-201ENST00000594613 730 ntBASIC29.68■■■□□ 2.34
CDX2Q99626 AC018755.3-201ENST00000598755 664 ntTSL 2 BASIC29.68■■■□□ 2.34
CDX2Q99626 DDN-AS1-203ENST00000552284 934 ntTSL 3 BASIC29.67■■■□□ 2.34
CDX2Q99626 PPP4R4-202ENST00000328839 876 ntTSL 1 (best) BASIC29.65■■■□□ 2.34
CDX2Q99626 FAM149A-205ENST00000502970 1990 ntAPPRIS P2 TSL 5 BASIC29.63■■■□□ 2.33
CDX2Q99626 PTPRF-216ENST00000617451 1129 ntTSL 5 BASIC29.63■■■□□ 2.33
CDX2Q99626 CCDC149-203ENST00000502801 1079 ntTSL 1 (best) BASIC29.62■■■□□ 2.33
CDX2Q99626 MFAP2-202ENST00000375535 1260 ntTSL 1 (best) BASIC29.61■■■□□ 2.33
CDX2Q99626 RPS2-209ENST00000529806 993 ntTSL 3 BASIC29.61■■■□□ 2.33
CDX2Q99626 VEGFA-231ENST00000640499 1188 ntAPPRIS P3 TSL 1 (best) BASIC29.6■■■□□ 2.33
CDX2Q99626 CLEC3B-202ENST00000428034 752 ntTSL 2 BASIC29.59■■■□□ 2.33
CDX2Q99626 CIB1-201ENST00000328649 1247 ntAPPRIS P1 TSL 1 (best) BASIC29.58■■■□□ 2.33
CDX2Q99626 TRIM52-AS1-203ENST00000509252 529 ntTSL 3 BASIC29.58■■■□□ 2.33
CDX2Q99626 CIB1-202ENST00000612800 1096 ntTSL 1 (best) BASIC29.58■■■□□ 2.33
CDX2Q99626 RP9P-201ENST00000381639 1303 ntTSL 1 (best) BASIC29.57■■■□□ 2.32
CDX2Q99626 EIF5A-208ENST00000573542 1089 ntAPPRIS P1 TSL 2 BASIC29.55■■■□□ 2.32
CDX2Q99626 HSD17B1-201ENST00000225929 1265 ntAPPRIS ALT2 TSL 2 BASIC29.53■■■□□ 2.32
CDX2Q99626 PSMG4-202ENST00000380305 489 ntTSL 5 BASIC29.53■■■□□ 2.32
CDX2Q99626 AP000911.3-201ENST00000526377 1130 ntTSL 3 BASIC29.53■■■□□ 2.32
CDX2Q99626 CR559946.2-201ENST00000623684 991 ntBASIC29.51■■■□□ 2.31
CDX2Q99626 HINT2-201ENST00000259667 628 ntAPPRIS P1 TSL 1 (best) BASIC29.5■■■□□ 2.31
CDX2Q99626 ING2-201ENST00000302327 1189 ntAPPRIS P1 TSL 1 (best) BASIC29.49■■■□□ 2.31
CDX2Q99626 PARD6A-201ENST00000219255 1248 ntAPPRIS P3 TSL 1 (best) BASIC29.48■■■□□ 2.31
CDX2Q99626 MAD2L2-205ENST00000376669 864 ntTSL 3 BASIC29.48■■■□□ 2.31
CDX2Q99626 AGPS-202ENST00000409888 815 ntTSL 4 BASIC29.48■■■□□ 2.31
CDX2Q99626 CIB2-204ENST00000557846 934 ntTSL 3 BASIC29.47■■■□□ 2.31
CDX2Q99626 U2AF1-201ENST00000291552 962 ntAPPRIS P3 TSL 1 (best) BASIC29.46■■■□□ 2.31
CDX2Q99626 FAAP20-202ENST00000378546 729 ntAPPRIS P1 TSL 1 (best) BASIC29.46■■■□□ 2.31
CDX2Q99626 U2AF1L5-202ENST00000619610 813 ntAPPRIS ALT2 TSL 1 (best) BASIC29.46■■■□□ 2.31
CDX2Q99626 P2RX2-203ENST00000350048 1344 ntTSL 1 (best) BASIC29.45■■■□□ 2.31
CDX2Q99626 DUX4L11-201ENST00000611504 1267 ntBASIC29.45■■■□□ 2.31
CDX2Q99626 DUX4L12-201ENST00000614593 1267 ntBASIC29.45■■■□□ 2.31
CDX2Q99626 DUX4L14-201ENST00000621227 1267 ntBASIC29.45■■■□□ 2.31
CDX2Q99626 BCL7B-202ENST00000411832 1458 ntTSL 2 BASIC29.44■■■□□ 2.3
CDX2Q99626 C16orf95-205ENST00000567970 1031 ntAPPRIS ALT2 TSL 5 BASIC29.44■■■□□ 2.3
CDX2Q99626 VEGFA-208ENST00000417285 1081 ntAPPRIS ALT2 TSL 1 (best) BASIC29.43■■■□□ 2.3
CDX2Q99626 PPP1R1A-201ENST00000257905 1826 ntAPPRIS P1 TSL 1 (best) BASIC29.43■■■□□ 2.3
CDX2Q99626 SSU72-201ENST00000291386 1290 ntAPPRIS P1 TSL 1 (best) BASIC29.42■■■□□ 2.3
CDX2Q99626 NME2-205ENST00000512737 826 ntAPPRIS P1 TSL 1 (best) BASIC29.4■■■□□ 2.3
CDX2Q99626 TERF2-207ENST00000567296 1129 ntTSL 1 (best) BASIC29.4■■■□□ 2.3
CDX2Q99626 DNLZ-201ENST00000371738 724 ntAPPRIS P1 TSL 1 (best) BASIC29.39■■■□□ 2.3
CDX2Q99626 NMB-202ENST00000394588 1017 ntTSL 1 (best) BASIC29.39■■■□□ 2.3
CDX2Q99626 AC007383.2-202ENST00000435627 482 ntTSL 2 BASIC29.39■■■□□ 2.3
CDX2Q99626 SLC22A23-201ENST00000380298 1574 ntTSL 1 (best) BASIC29.39■■■□□ 2.29
CDX2Q99626 UBALD1-203ENST00000587649 707 ntTSL 3 BASIC29.38■■■□□ 2.29
CDX2Q99626 GADD45A-205ENST00000617962 1142 ntTSL 1 (best) BASIC29.37■■■□□ 2.29
CDX2Q99626 CHCHD4-201ENST00000295767 1603 ntTSL 2 BASIC29.36■■■□□ 2.29
CDX2Q99626 MRPL51-201ENST00000229238 1234 ntAPPRIS P1 TSL 1 (best) BASIC29.36■■■□□ 2.29
CDX2Q99626 GSTP1-202ENST00000398606 965 ntAPPRIS P1 TSL 1 (best) BASIC29.36■■■□□ 2.29
CDX2Q99626 GTF3C4-202ENST00000483873 1417 ntTSL 3 BASIC29.36■■■□□ 2.29
CDX2Q99626 AL139393.1-201ENST00000417479 573 ntTSL 5 BASIC29.35■■■□□ 2.29
CDX2Q99626 ELOC-207ENST00000522337 816 ntAPPRIS P1 TSL 2 BASIC29.35■■■□□ 2.29
CDX2Q99626 LINC01971-201ENST00000617888 1048 ntBASIC29.35■■■□□ 2.29
CDX2Q99626 KCTD17-209ENST00000610767 1502 ntAPPRIS ALT2 TSL 3 BASIC29.35■■■□□ 2.29
CDX2Q99626 ZNF358-202ENST00000597229 1954 ntAPPRIS P1 TSL 2 BASIC29.32■■■□□ 2.28
CDX2Q99626 GADD45G-201ENST00000252506 1065 ntAPPRIS P1 TSL 1 (best) BASIC29.3■■■□□ 2.28
CDX2Q99626 MRPL9-201ENST00000368829 882 ntAPPRIS ALT2 TSL 2 BASIC29.29■■■□□ 2.28
CDX2Q99626 AL589765.4-201ENST00000512280 382 ntTSL 3 BASIC29.29■■■□□ 2.28
CDX2Q99626 NEURL1B-203ENST00000522853 1263 ntTSL 1 (best) BASIC29.29■■■□□ 2.28
CDX2Q99626 KCTD5-202ENST00000564195 774 ntTSL 5 BASIC29.29■■■□□ 2.28
CDX2Q99626 C5orf66-AS1-201ENST00000507035 843 ntTSL 2 BASIC29.28■■■□□ 2.28
CDX2Q99626 C16orf95-206ENST00000618367 974 ntAPPRIS ALT2 TSL 2 BASIC29.28■■■□□ 2.28
CDX2Q99626 WASH5P-204ENST00000632292 975 ntBASIC29.28■■■□□ 2.28
CDX2Q99626 CMAS-201ENST00000229329 1787 ntAPPRIS P1 TSL 1 (best) BASIC29.28■■■□□ 2.28
CDX2Q99626 GIPC1-201ENST00000345425 1782 ntAPPRIS P1 TSL 1 (best) BASIC29.27■■■□□ 2.28
CDX2Q99626 ABHD17AP5-201ENST00000580133 923 ntBASIC29.27■■■□□ 2.28
CDX2Q99626 RARRES2P2-201ENST00000394842 485 ntBASIC29.26■■■□□ 2.27
CDX2Q99626 ECI1-207ENST00000570258 1512 ntAPPRIS ALT2 TSL 5 BASIC29.25■■■□□ 2.27
CDX2Q99626 HAPLN2-201ENST00000255039 1771 ntAPPRIS P1 TSL 1 (best) BASIC29.25■■■□□ 2.27
CDX2Q99626 MNX1-207ENST00000543409 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC29.24■■■□□ 2.27
CDX2Q99626 CCM2-218ENST00000541586 1719 ntTSL 3 BASIC29.24■■■□□ 2.27
CDX2Q99626 STARD10-220ENST00000545082 1085 ntTSL 3 BASIC29.24■■■□□ 2.27
CDX2Q99626 HSD11B1L-209ENST00000577917 1553 ntTSL 1 (best) BASIC29.24■■■□□ 2.27
CDX2Q99626 UBE2A-207ENST00000628549 934 ntTSL 2 BASIC29.24■■■□□ 2.27
CDX2Q99626 PIGX-201ENST00000296333 953 ntAPPRIS ALT2 TSL 2 BASIC29.23■■■□□ 2.27
CDX2Q99626 AURKAIP1-203ENST00000338370 1072 ntAPPRIS P1 TSL 1 (best) BASIC29.23■■■□□ 2.27
CDX2Q99626 ACOT7-209ENST00000545482 1804 ntAPPRIS ALT2 TSL 1 (best) BASIC29.22■■■□□ 2.27
CDX2Q99626 DCUN1D5-201ENST00000260247 1337 ntAPPRIS P1 TSL 1 (best) BASIC29.2■■■□□ 2.27
CDX2Q99626 ATRAID-201ENST00000380171 1240 ntTSL 1 (best) BASIC29.2■■■□□ 2.26
CDX2Q99626 MIR6090-201ENST00000622481 60 ntBASIC29.2■■■□□ 2.26
Retrieved 100 of 98,524 protein–RNA pairs in 12.3 ms