Protein–RNA interactions for Protein: Q96N23

CFAP54, Cilia- and flagella-associated protein 54, humanhuman

Predictions only

Length 3,096 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CFAP54Q96N23 U2AF1-201ENST00000291552 962 ntAPPRIS P3 TSL 1 (best) BASIC27.52■■■□□ 2
CFAP54Q96N23 U2AF1L5-202ENST00000619610 813 ntAPPRIS ALT2 TSL 1 (best) BASIC27.52■■■□□ 2
CFAP54Q96N23 MVK-208ENST00000539696 608 ntTSL 5 BASIC27.51■■□□□ 1.99
CFAP54Q96N23 EIF5A-208ENST00000573542 1089 ntAPPRIS P1 TSL 2 BASIC27.51■■□□□ 1.99
CFAP54Q96N23 HDAC11-206ENST00000405025 576 ntTSL 4 BASIC27.5■■□□□ 1.99
CFAP54Q96N23 COMMD3-201ENST00000376836 1342 ntAPPRIS P1 TSL 1 (best) BASIC27.5■■□□□ 1.99
CFAP54Q96N23 RASSF7-201ENST00000397582 1731 ntAPPRIS ALT2 TSL 2 BASIC27.5■■□□□ 1.99
CFAP54Q96N23 HOXD-AS2-202ENST00000440016 999 ntTSL 5 BASIC27.49■■□□□ 1.99
CFAP54Q96N23 FEZF2-203ENST00000486811 2001 ntAPPRIS P1 TSL 5 BASIC27.49■■□□□ 1.99
CFAP54Q96N23 NME2-205ENST00000512737 826 ntAPPRIS P1 TSL 1 (best) BASIC27.49■■□□□ 1.99
CFAP54Q96N23 CR559946.2-201ENST00000623684 991 ntBASIC27.49■■□□□ 1.99
CFAP54Q96N23 C16orf95-205ENST00000567970 1031 ntAPPRIS ALT2 TSL 5 BASIC27.49■■□□□ 1.99
CFAP54Q96N23 SIGMAR1-205ENST00000477726 840 ntTSL 1 (best) BASIC27.48■■□□□ 1.99
CFAP54Q96N23 NEURL1B-203ENST00000522853 1263 ntTSL 1 (best) BASIC27.48■■□□□ 1.99
CFAP54Q96N23 GADD45A-205ENST00000617962 1142 ntTSL 1 (best) BASIC27.48■■□□□ 1.99
CFAP54Q96N23 CCNYL1-205ENST00000420822 952 ntTSL 1 (best) BASIC27.46■■□□□ 1.99
CFAP54Q96N23 BCL7B-202ENST00000411832 1458 ntTSL 2 BASIC27.46■■□□□ 1.99
CFAP54Q96N23 TSEN34-203ENST00000396388 1349 ntAPPRIS P1 TSL 1 (best) BASIC27.44■■□□□ 1.98
CFAP54Q96N23 AC234582.1-201ENST00000447623 923 ntTSL 5 BASIC27.44■■□□□ 1.98
CFAP54Q96N23 LTB4R2-204ENST00000533293 1515 ntAPPRIS P1 TSL 1 (best) BASIC27.44■■□□□ 1.98
CFAP54Q96N23 LANCL3-203ENST00000614025 1469 ntTSL 2 BASIC27.44■■□□□ 1.98
CFAP54Q96N23 RARRES2P2-201ENST00000394842 485 ntBASIC27.44■■□□□ 1.98
CFAP54Q96N23 RNF166-209ENST00000567844 633 ntTSL 5 BASIC27.43■■□□□ 1.98
CFAP54Q96N23 GDI1-215ENST00000630693 786 ntTSL 4 BASIC27.43■■□□□ 1.98
CFAP54Q96N23 PPP1CC-202ENST00000340766 1472 ntTSL 2 BASIC27.43■■□□□ 1.98
CFAP54Q96N23 TCEA2-202ENST00000343484 1235 ntAPPRIS P1 TSL 1 (best) BASIC27.42■■□□□ 1.98
CFAP54Q96N23 ARRDC1-201ENST00000371421 1586 ntAPPRIS P1 TSL 1 (best) BASIC27.42■■□□□ 1.98
CFAP54Q96N23 VEGFA-207ENST00000413642 1197 ntAPPRIS ALT2 TSL 1 (best) BASIC27.42■■□□□ 1.98
CFAP54Q96N23 DUX4L29-201ENST00000425409 679 ntBASIC27.41■■□□□ 1.98
CFAP54Q96N23 TRIM52-AS1-203ENST00000509252 529 ntTSL 3 BASIC27.4■■□□□ 1.98
CFAP54Q96N23 DENR-202ENST00000455982 1052 ntTSL 5 BASIC27.4■■□□□ 1.98
CFAP54Q96N23 FAAP20-204ENST00000400919 1413 ntTSL 3 BASIC27.4■■□□□ 1.98
CFAP54Q96N23 UBALD1-203ENST00000587649 707 ntTSL 3 BASIC27.39■■□□□ 1.98
CFAP54Q96N23 Z97634.1-201ENST00000412293 1715 ntTSL 1 (best) BASIC27.37■■□□□ 1.97
CFAP54Q96N23 HSD17B1-201ENST00000225929 1265 ntAPPRIS ALT2 TSL 2 BASIC27.37■■□□□ 1.97
CFAP54Q96N23 NAA50-207ENST00000493900 962 ntAPPRIS ALT1 TSL 2 BASIC27.36■■□□□ 1.97
CFAP54Q96N23 DDN-AS1-203ENST00000552284 934 ntTSL 3 BASIC27.36■■□□□ 1.97
CFAP54Q96N23 CLEC3B-202ENST00000428034 752 ntTSL 2 BASIC27.35■■□□□ 1.97
CFAP54Q96N23 MISP3-201ENST00000269720 1424 ntAPPRIS ALT2 TSL 5 BASIC27.35■■□□□ 1.97
CFAP54Q96N23 VAX2-201ENST00000234392 1147 ntAPPRIS P1 TSL 1 (best) BASIC27.35■■□□□ 1.97
CFAP54Q96N23 CCDC149-203ENST00000502801 1079 ntTSL 1 (best) BASIC27.35■■□□□ 1.97
CFAP54Q96N23 PPP1R14B-201ENST00000309318 982 ntAPPRIS P1 TSL 1 (best) BASIC27.34■■□□□ 1.97
CFAP54Q96N23 VEGFA-208ENST00000417285 1081 ntAPPRIS ALT2 TSL 1 (best) BASIC27.33■■□□□ 1.97
CFAP54Q96N23 DCUN1D5-201ENST00000260247 1337 ntAPPRIS P1 TSL 1 (best) BASIC27.33■■□□□ 1.97
CFAP54Q96N23 AP000911.3-201ENST00000526377 1130 ntTSL 3 BASIC27.3■■□□□ 1.96
CFAP54Q96N23 AC021231.2-201ENST00000594613 730 ntBASIC27.28■■□□□ 1.96
CFAP54Q96N23 B4GALT2-203ENST00000372324 2203 ntAPPRIS P1 TSL 1 (best) BASIC27.28■■□□□ 1.96
CFAP54Q96N23 RAB43-207ENST00000476465 1627 ntTSL 3 BASIC27.28■■□□□ 1.96
CFAP54Q96N23 DTNBP1-212ENST00000622898 1305 ntTSL 1 (best) BASIC27.27■■□□□ 1.96
CFAP54Q96N23 MRPL51-201ENST00000229238 1234 ntAPPRIS P1 TSL 1 (best) BASIC27.27■■□□□ 1.96
CFAP54Q96N23 AGPS-202ENST00000409888 815 ntTSL 4 BASIC27.27■■□□□ 1.96
CFAP54Q96N23 ABHD17AP5-201ENST00000580133 923 ntBASIC27.27■■□□□ 1.96
CFAP54Q96N23 C16orf95-206ENST00000618367 974 ntAPPRIS ALT2 TSL 2 BASIC27.26■■□□□ 1.95
CFAP54Q96N23 INPP5A-202ENST00000368593 1432 ntTSL 1 (best) BASIC27.26■■□□□ 1.95
CFAP54Q96N23 MAPK1-202ENST00000398822 1487 ntAPPRIS P1 TSL 1 (best) BASIC27.25■■□□□ 1.95
CFAP54Q96N23 KMT2E-AS1-201ENST00000453677 736 ntTSL 3 BASIC27.24■■□□□ 1.95
CFAP54Q96N23 PARD6A-201ENST00000219255 1248 ntAPPRIS P3 TSL 1 (best) BASIC27.22■■□□□ 1.95
CFAP54Q96N23 MFAP2-202ENST00000375535 1260 ntTSL 1 (best) BASIC27.22■■□□□ 1.95
CFAP54Q96N23 VEGFA-231ENST00000640499 1188 ntAPPRIS P3 TSL 1 (best) BASIC27.2■■□□□ 1.94
CFAP54Q96N23 PIGX-201ENST00000296333 953 ntAPPRIS ALT2 TSL 2 BASIC27.19■■□□□ 1.94
CFAP54Q96N23 P2RX2-203ENST00000350048 1344 ntTSL 1 (best) BASIC27.19■■□□□ 1.94
CFAP54Q96N23 ING2-201ENST00000302327 1189 ntAPPRIS P1 TSL 1 (best) BASIC27.19■■□□□ 1.94
CFAP54Q96N23 C1orf232-201ENST00000634842 643 ntAPPRIS P5 TSL 5 BASIC27.19■■□□□ 1.94
CFAP54Q96N23 RP9P-201ENST00000381639 1303 ntTSL 1 (best) BASIC27.19■■□□□ 1.94
CFAP54Q96N23 SSTR4-201ENST00000255008 1427 ntAPPRIS P1 BASIC27.18■■□□□ 1.94
CFAP54Q96N23 CAPNS1-216ENST00000628306 1389 ntTSL 5 BASIC27.18■■□□□ 1.94
CFAP54Q96N23 AC005540.1-201ENST00000413911 919 ntTSL 3 BASIC27.17■■□□□ 1.94
CFAP54Q96N23 RAB12-201ENST00000329286 2137 ntAPPRIS P1 TSL 1 (best) BASIC27.17■■□□□ 1.94
CFAP54Q96N23 FAAP20-202ENST00000378546 729 ntAPPRIS P1 TSL 1 (best) BASIC27.17■■□□□ 1.94
CFAP54Q96N23 HINT2-201ENST00000259667 628 ntAPPRIS P1 TSL 1 (best) BASIC27.15■■□□□ 1.94
CFAP54Q96N23 BRF1-213ENST00000548421 1452 ntTSL 1 (best) BASIC27.15■■□□□ 1.94
CFAP54Q96N23 MAD2L2-205ENST00000376669 864 ntTSL 3 BASIC27.14■■□□□ 1.94
CFAP54Q96N23 MXD3-208ENST00000513063 861 ntAPPRIS P1 TSL 5 BASIC27.12■■□□□ 1.93
CFAP54Q96N23 ACOT7-209ENST00000545482 1804 ntAPPRIS ALT2 TSL 1 (best) BASIC27.11■■□□□ 1.93
CFAP54Q96N23 PSMG4-202ENST00000380305 489 ntTSL 5 BASIC27.11■■□□□ 1.93
CFAP54Q96N23 DNLZ-201ENST00000371738 724 ntAPPRIS P1 TSL 1 (best) BASIC27.1■■□□□ 1.93
CFAP54Q96N23 AURKAIP1-203ENST00000338370 1072 ntAPPRIS P1 TSL 1 (best) BASIC27.1■■□□□ 1.93
CFAP54Q96N23 AC019069.1-201ENST00000610008 1333 ntBASIC27.09■■□□□ 1.93
CFAP54Q96N23 GIPC1-202ENST00000393028 1483 ntTSL 3 BASIC27.09■■□□□ 1.93
CFAP54Q96N23 SLC35D2-203ENST00000375259 1361 ntTSL 1 (best) BASIC27.09■■□□□ 1.93
CFAP54Q96N23 GTF3C4-202ENST00000483873 1417 ntTSL 3 BASIC27.06■■□□□ 1.92
CFAP54Q96N23 GADD45G-201ENST00000252506 1065 ntAPPRIS P1 TSL 1 (best) BASIC27.05■■□□□ 1.92
CFAP54Q96N23 MAPK3-205ENST00000395202 1008 ntTSL 1 (best) BASIC27.05■■□□□ 1.92
CFAP54Q96N23 LINC01971-201ENST00000617888 1048 ntBASIC27.05■■□□□ 1.92
CFAP54Q96N23 AC016595.1-201ENST00000559410 383 ntTSL 3 BASIC27.05■■□□□ 1.92
CFAP54Q96N23 MRPL9-201ENST00000368829 882 ntAPPRIS ALT2 TSL 2 BASIC27.04■■□□□ 1.92
CFAP54Q96N23 AL589765.4-201ENST00000512280 382 ntTSL 3 BASIC27.04■■□□□ 1.92
CFAP54Q96N23 MNX1-207ENST00000543409 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC27.02■■□□□ 1.92
CFAP54Q96N23 HNRNPUL1-221ENST00000617305 1018 ntTSL 1 (best) BASIC27.01■■□□□ 1.91
CFAP54Q96N23 STARD10-220ENST00000545082 1085 ntTSL 3 BASIC27■■□□□ 1.91
CFAP54Q96N23 HAPLN2-201ENST00000255039 1771 ntAPPRIS P1 TSL 1 (best) BASIC27■■□□□ 1.91
CFAP54Q96N23 GRK2-204ENST00000526285 1458 ntTSL 5 BASIC26.99■■□□□ 1.91
CFAP54Q96N23 DUX4L11-201ENST00000611504 1267 ntBASIC26.98■■□□□ 1.91
CFAP54Q96N23 DUX4L12-201ENST00000614593 1267 ntBASIC26.98■■□□□ 1.91
CFAP54Q96N23 DUX4L14-201ENST00000621227 1267 ntBASIC26.98■■□□□ 1.91
CFAP54Q96N23 METTL24-201ENST00000338882 1119 ntAPPRIS P1 TSL 5 BASIC26.98■■□□□ 1.91
CFAP54Q96N23 KHSRP-213ENST00000619396 2226 ntAPPRIS ALT2 TSL 5 BASIC26.97■■□□□ 1.91
CFAP54Q96N23 MMP28-203ENST00000612672 1092 ntTSL 1 (best) BASIC26.97■■□□□ 1.91
CFAP54Q96N23 ENHO-201ENST00000399775 1082 ntAPPRIS P1 TSL 2 BASIC26.97■■□□□ 1.91
CFAP54Q96N23 RPS2-209ENST00000529806 993 ntTSL 3 BASIC26.97■■□□□ 1.91
Retrieved 100 of 98,524 protein–RNA pairs in 52.7 ms