Protein–RNA interactions for Protein: Q96AY4

TTC28, Tetratricopeptide repeat protein 28, humanhuman

Predictions only

Length 2,481 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28Q96AY4 VEGFA-207ENST00000413642 1197 ntAPPRIS ALT2 TSL 1 (best) BASIC29.11■■■□□ 2.25
TTC28Q96AY4 DENR-202ENST00000455982 1052 ntTSL 5 BASIC29.11■■■□□ 2.25
TTC28Q96AY4 AC016575.1-201ENST00000607026 382 ntBASIC29.11■■■□□ 2.25
TTC28Q96AY4 AC116407.1-201ENST00000398832 1599 ntTSL 2 BASIC29.11■■■□□ 2.25
TTC28Q96AY4 HOXD-AS2-202ENST00000440016 999 ntTSL 5 BASIC29.11■■■□□ 2.25
TTC28Q96AY4 CCM2-219ENST00000544363 1620 ntTSL 3 BASIC29.1■■■□□ 2.25
TTC28Q96AY4 LANCL3-203ENST00000614025 1469 ntTSL 2 BASIC29.1■■■□□ 2.25
TTC28Q96AY4 PPP4R4-202ENST00000328839 876 ntTSL 1 (best) BASIC29.09■■■□□ 2.25
TTC28Q96AY4 TCEA2-202ENST00000343484 1235 ntAPPRIS P1 TSL 1 (best) BASIC29.09■■■□□ 2.25
TTC28Q96AY4 COMMD3-201ENST00000376836 1342 ntAPPRIS P1 TSL 1 (best) BASIC29.07■■■□□ 2.24
TTC28Q96AY4 CR559946.2-201ENST00000623684 991 ntBASIC29.05■■■□□ 2.24
TTC28Q96AY4 UBALD1-203ENST00000587649 707 ntTSL 3 BASIC29.05■■■□□ 2.24
TTC28Q96AY4 DCUN1D5-201ENST00000260247 1337 ntAPPRIS P1 TSL 1 (best) BASIC29.04■■■□□ 2.24
TTC28Q96AY4 DUX4L29-201ENST00000425409 679 ntBASIC29.04■■■□□ 2.24
TTC28Q96AY4 NAA50-207ENST00000493900 962 ntAPPRIS ALT1 TSL 2 BASIC29.04■■■□□ 2.24
TTC28Q96AY4 NME2-205ENST00000512737 826 ntAPPRIS P1 TSL 1 (best) BASIC29.03■■■□□ 2.24
TTC28Q96AY4 AP000911.3-201ENST00000526377 1130 ntTSL 3 BASIC29.03■■■□□ 2.24
TTC28Q96AY4 PPP1CC-202ENST00000340766 1472 ntTSL 2 BASIC29.03■■■□□ 2.24
TTC28Q96AY4 VEGFA-208ENST00000417285 1081 ntAPPRIS ALT2 TSL 1 (best) BASIC29.03■■■□□ 2.24
TTC28Q96AY4 TRIM52-AS1-203ENST00000509252 529 ntTSL 3 BASIC29.01■■■□□ 2.23
TTC28Q96AY4 CCDC149-203ENST00000502801 1079 ntTSL 1 (best) BASIC29■■■□□ 2.23
TTC28Q96AY4 LTB4R2-204ENST00000533293 1515 ntAPPRIS P1 TSL 1 (best) BASIC29■■■□□ 2.23
TTC28Q96AY4 VAX2-201ENST00000234392 1147 ntAPPRIS P1 TSL 1 (best) BASIC29■■■□□ 2.23
TTC28Q96AY4 RARRES2P2-201ENST00000394842 485 ntBASIC28.99■■■□□ 2.23
TTC28Q96AY4 AGPS-202ENST00000409888 815 ntTSL 4 BASIC28.99■■■□□ 2.23
TTC28Q96AY4 BCL7B-202ENST00000411832 1458 ntTSL 2 BASIC28.98■■■□□ 2.23
TTC28Q96AY4 C11orf84-201ENST00000294244 2024 ntAPPRIS P1 TSL 1 (best) BASIC28.98■■■□□ 2.23
TTC28Q96AY4 GADD45A-205ENST00000617962 1142 ntTSL 1 (best) BASIC28.98■■■□□ 2.23
TTC28Q96AY4 RNF166-209ENST00000567844 633 ntTSL 5 BASIC28.96■■■□□ 2.23
TTC28Q96AY4 PPP1R14B-201ENST00000309318 982 ntAPPRIS P1 TSL 1 (best) BASIC28.96■■■□□ 2.23
TTC28Q96AY4 CLEC3B-202ENST00000428034 752 ntTSL 2 BASIC28.95■■■□□ 2.23
TTC28Q96AY4 RP9P-201ENST00000381639 1303 ntTSL 1 (best) BASIC28.95■■■□□ 2.22
TTC28Q96AY4 RASSF7-201ENST00000397582 1731 ntAPPRIS ALT2 TSL 2 BASIC28.95■■■□□ 2.22
TTC28Q96AY4 ARRDC1-201ENST00000371421 1586 ntAPPRIS P1 TSL 1 (best) BASIC28.93■■■□□ 2.22
TTC28Q96AY4 AC021231.2-201ENST00000594613 730 ntBASIC28.93■■■□□ 2.22
TTC28Q96AY4 GDI1-215ENST00000630693 786 ntTSL 4 BASIC28.92■■■□□ 2.22
TTC28Q96AY4 TSEN34-203ENST00000396388 1349 ntAPPRIS P1 TSL 1 (best) BASIC28.92■■■□□ 2.22
TTC28Q96AY4 PCYT2-205ENST00000570391 1857 ntTSL 2 BASIC28.91■■■□□ 2.22
TTC28Q96AY4 RAB43-207ENST00000476465 1627 ntTSL 3 BASIC28.89■■■□□ 2.22
TTC28Q96AY4 ABHD17AP5-201ENST00000580133 923 ntBASIC28.87■■■□□ 2.21
TTC28Q96AY4 HSD17B1-201ENST00000225929 1265 ntAPPRIS ALT2 TSL 2 BASIC28.86■■■□□ 2.21
TTC28Q96AY4 MRPL51-201ENST00000229238 1234 ntAPPRIS P1 TSL 1 (best) BASIC28.86■■■□□ 2.21
TTC28Q96AY4 HINT2-201ENST00000259667 628 ntAPPRIS P1 TSL 1 (best) BASIC28.85■■■□□ 2.21
TTC28Q96AY4 PIGX-201ENST00000296333 953 ntAPPRIS ALT2 TSL 2 BASIC28.85■■■□□ 2.21
TTC28Q96AY4 MISP3-201ENST00000269720 1424 ntAPPRIS ALT2 TSL 5 BASIC28.84■■■□□ 2.21
TTC28Q96AY4 P2RX2-203ENST00000350048 1344 ntTSL 1 (best) BASIC28.84■■■□□ 2.21
TTC28Q96AY4 Z97634.1-201ENST00000412293 1715 ntTSL 1 (best) BASIC28.83■■■□□ 2.21
TTC28Q96AY4 PARD6A-201ENST00000219255 1248 ntAPPRIS P3 TSL 1 (best) BASIC28.81■■■□□ 2.2
TTC28Q96AY4 DNLZ-201ENST00000371738 724 ntAPPRIS P1 TSL 1 (best) BASIC28.81■■■□□ 2.2
TTC28Q96AY4 ING2-201ENST00000302327 1189 ntAPPRIS P1 TSL 1 (best) BASIC28.79■■■□□ 2.2
TTC28Q96AY4 DTNBP1-212ENST00000622898 1305 ntTSL 1 (best) BASIC28.78■■■□□ 2.2
TTC28Q96AY4 FEZF2-203ENST00000486811 2001 ntAPPRIS P1 TSL 5 BASIC28.77■■■□□ 2.2
TTC28Q96AY4 MFAP2-202ENST00000375535 1260 ntTSL 1 (best) BASIC28.76■■■□□ 2.19
TTC28Q96AY4 VEGFA-231ENST00000640499 1188 ntAPPRIS P3 TSL 1 (best) BASIC28.76■■■□□ 2.19
TTC28Q96AY4 FAAP20-202ENST00000378546 729 ntAPPRIS P1 TSL 1 (best) BASIC28.75■■■□□ 2.19
TTC28Q96AY4 C16orf95-206ENST00000618367 974 ntAPPRIS ALT2 TSL 2 BASIC28.75■■■□□ 2.19
TTC28Q96AY4 C1orf232-201ENST00000634842 643 ntAPPRIS P5 TSL 5 BASIC28.74■■■□□ 2.19
TTC28Q96AY4 INPP5A-202ENST00000368593 1432 ntTSL 1 (best) BASIC28.73■■■□□ 2.19
TTC28Q96AY4 AURKAIP1-203ENST00000338370 1072 ntAPPRIS P1 TSL 1 (best) BASIC28.73■■■□□ 2.19
TTC28Q96AY4 STARD10-220ENST00000545082 1085 ntTSL 3 BASIC28.73■■■□□ 2.19
TTC28Q96AY4 MAD2L2-205ENST00000376669 864 ntTSL 3 BASIC28.72■■■□□ 2.19
TTC28Q96AY4 PSMG4-202ENST00000380305 489 ntTSL 5 BASIC28.72■■■□□ 2.19
TTC28Q96AY4 MAPK3-205ENST00000395202 1008 ntTSL 1 (best) BASIC28.72■■■□□ 2.19
TTC28Q96AY4 KMT2E-AS1-201ENST00000453677 736 ntTSL 3 BASIC28.72■■■□□ 2.19
TTC28Q96AY4 GIPC1-202ENST00000393028 1483 ntTSL 3 BASIC28.71■■■□□ 2.19
TTC28Q96AY4 SSTR4-201ENST00000255008 1427 ntAPPRIS P1 BASIC28.71■■■□□ 2.19
TTC28Q96AY4 MPND-207ENST00000599840 1611 ntAPPRIS ALT2 TSL 5 BASIC28.7■■■□□ 2.19
TTC28Q96AY4 GRK2-204ENST00000526285 1458 ntTSL 5 BASIC28.7■■■□□ 2.18
TTC28Q96AY4 AC005540.1-201ENST00000413911 919 ntTSL 3 BASIC28.69■■■□□ 2.18
TTC28Q96AY4 SRP68-213ENST00000629930 165 ntTSL 5 BASIC28.68■■■□□ 2.18
TTC28Q96AY4 LINC01971-201ENST00000617888 1048 ntBASIC28.67■■■□□ 2.18
TTC28Q96AY4 DUX4L11-201ENST00000611504 1267 ntBASIC28.65■■■□□ 2.18
TTC28Q96AY4 DUX4L12-201ENST00000614593 1267 ntBASIC28.65■■■□□ 2.18
TTC28Q96AY4 DUX4L14-201ENST00000621227 1267 ntBASIC28.65■■■□□ 2.18
TTC28Q96AY4 RPS2-209ENST00000529806 993 ntTSL 3 BASIC28.64■■■□□ 2.18
TTC28Q96AY4 H2AFV-204ENST00000350771 687 ntTSL 2 BASIC28.64■■■□□ 2.17
TTC28Q96AY4 AC068134.2-201ENST00000437095 576 ntTSL 3 BASIC28.63■■■□□ 2.17
TTC28Q96AY4 CYHR1-209ENST00000530374 1870 ntTSL 3 BASIC28.63■■■□□ 2.17
TTC28Q96AY4 MAPK1-202ENST00000398822 1487 ntAPPRIS P1 TSL 1 (best) BASIC28.63■■■□□ 2.17
TTC28Q96AY4 AC016595.1-201ENST00000559410 383 ntTSL 3 BASIC28.63■■■□□ 2.17
TTC28Q96AY4 CAPNS1-216ENST00000628306 1389 ntTSL 5 BASIC28.62■■■□□ 2.17
TTC28Q96AY4 MXD3-208ENST00000513063 861 ntAPPRIS P1 TSL 5 BASIC28.62■■■□□ 2.17
TTC28Q96AY4 BRF1-213ENST00000548421 1452 ntTSL 1 (best) BASIC28.61■■■□□ 2.17
TTC28Q96AY4 GTF3C4-202ENST00000483873 1417 ntTSL 3 BASIC28.61■■■□□ 2.17
TTC28Q96AY4 AC019069.1-201ENST00000610008 1333 ntBASIC28.61■■■□□ 2.17
TTC28Q96AY4 HNRNPUL1-221ENST00000617305 1018 ntTSL 1 (best) BASIC28.6■■■□□ 2.17
TTC28Q96AY4 GADD45G-201ENST00000252506 1065 ntAPPRIS P1 TSL 1 (best) BASIC28.6■■■□□ 2.17
TTC28Q96AY4 MRPL9-201ENST00000368829 882 ntAPPRIS ALT2 TSL 2 BASIC28.6■■■□□ 2.17
TTC28Q96AY4 AL589765.4-201ENST00000512280 382 ntTSL 3 BASIC28.6■■■□□ 2.17
TTC28Q96AY4 SLC35D2-203ENST00000375259 1361 ntTSL 1 (best) BASIC28.58■■■□□ 2.17
TTC28Q96AY4 RNF126P1-201ENST00000567452 1320 ntBASIC28.56■■■□□ 2.16
TTC28Q96AY4 TERF2-207ENST00000567296 1129 ntTSL 1 (best) BASIC28.55■■■□□ 2.16
TTC28Q96AY4 ENHO-201ENST00000399775 1082 ntAPPRIS P1 TSL 2 BASIC28.55■■■□□ 2.16
TTC28Q96AY4 CIB2-204ENST00000557846 934 ntTSL 3 BASIC28.52■■■□□ 2.16
TTC28Q96AY4 ECI1-207ENST00000570258 1512 ntAPPRIS ALT2 TSL 5 BASIC28.52■■■□□ 2.16
TTC28Q96AY4 ACOT7-209ENST00000545482 1804 ntAPPRIS ALT2 TSL 1 (best) BASIC28.51■■■□□ 2.15
TTC28Q96AY4 METTL24-201ENST00000338882 1119 ntAPPRIS P1 TSL 5 BASIC28.51■■■□□ 2.15
TTC28Q96AY4 AC018358.1-201ENST00000631079 1402 ntBASIC28.48■■■□□ 2.15
TTC28Q96AY4 MNX1-207ENST00000543409 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC28.46■■■□□ 2.15
TTC28Q96AY4 SSU72-201ENST00000291386 1290 ntAPPRIS P1 TSL 1 (best) BASIC28.46■■■□□ 2.15
Retrieved 100 of 98,524 protein–RNA pairs in 25.9 ms