Protein–RNA interactions for Protein: O75445

USH2A, Usherin, humanhuman

Predictions only

Length 5,202 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USH2AO75445 VAX2-201ENST00000234392 1147 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
USH2AO75445 RSG1-201ENST00000375599 1545 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
USH2AO75445 CLDND1-226ENST00000513287 999 ntAPPRIS P1 TSL 2 BASIC12.68□□□□□ -0.38
USH2AO75445 LAPTM4B-203ENST00000521545 915 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
USH2AO75445 PPP4R4-202ENST00000328839 876 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
USH2AO75445 KCTD5-202ENST00000564195 774 ntTSL 5 BASIC12.68□□□□□ -0.38
USH2AO75445 RASSF7-201ENST00000397582 1731 ntAPPRIS ALT2 TSL 2 BASIC12.68□□□□□ -0.38
USH2AO75445 AC016575.1-201ENST00000607026 382 ntBASIC12.67□□□□□ -0.38
USH2AO75445 KRT18-201ENST00000388835 1562 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
USH2AO75445 SIGMAR1-205ENST00000477726 840 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
USH2AO75445 AC021231.2-201ENST00000594613 730 ntBASIC12.67□□□□□ -0.38
USH2AO75445 FEZF2-203ENST00000486811 2001 ntAPPRIS P1 TSL 5 BASIC12.67□□□□□ -0.38
USH2AO75445 GFRA4-202ENST00000319242 900 ntAPPRIS P4 TSL 1 (best) BASIC12.67□□□□□ -0.38
USH2AO75445 CCNYL1-205ENST00000420822 952 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
USH2AO75445 LTB4R2-204ENST00000533293 1515 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
USH2AO75445 BCL7B-202ENST00000411832 1458 ntTSL 2 BASIC12.65□□□□□ -0.38
USH2AO75445 COMMD3-201ENST00000376836 1342 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
USH2AO75445 C16orf95-206ENST00000618367 974 ntAPPRIS ALT2 TSL 2 BASIC12.65□□□□□ -0.39
USH2AO75445 TSEN34-203ENST00000396388 1349 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
USH2AO75445 LANCL3-203ENST00000614025 1469 ntTSL 2 BASIC12.64□□□□□ -0.39
USH2AO75445 CYHR1-209ENST00000530374 1870 ntTSL 3 BASIC12.64□□□□□ -0.39
USH2AO75445 EIF5A-208ENST00000573542 1089 ntAPPRIS P1 TSL 2 BASIC12.64□□□□□ -0.39
USH2AO75445 NME2-205ENST00000512737 826 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
USH2AO75445 TCEA2-202ENST00000343484 1235 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
USH2AO75445 DNLZ-201ENST00000371738 724 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
USH2AO75445 Z97634.1-201ENST00000412293 1715 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
USH2AO75445 INPP5A-202ENST00000368593 1432 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
USH2AO75445 HSD17B1-201ENST00000225929 1265 ntAPPRIS ALT2 TSL 2 BASIC12.63□□□□□ -0.39
USH2AO75445 PPP1R14B-201ENST00000309318 982 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
USH2AO75445 DUX4L29-201ENST00000425409 679 ntBASIC12.63□□□□□ -0.39
USH2AO75445 DENR-202ENST00000455982 1052 ntTSL 5 BASIC12.63□□□□□ -0.39
USH2AO75445 TRIM52-AS1-203ENST00000509252 529 ntTSL 3 BASIC12.63□□□□□ -0.39
USH2AO75445 NEURL1B-203ENST00000522853 1263 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
USH2AO75445 DDN-AS1-203ENST00000552284 934 ntTSL 3 BASIC12.62□□□□□ -0.39
USH2AO75445 GADD45A-205ENST00000617962 1142 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
USH2AO75445 KMT2E-AS1-201ENST00000453677 736 ntTSL 3 BASIC12.61□□□□□ -0.39
USH2AO75445 RARRES2P2-201ENST00000394842 485 ntBASIC12.61□□□□□ -0.39
USH2AO75445 UBALD1-203ENST00000587649 707 ntTSL 3 BASIC12.6□□□□□ -0.39
USH2AO75445 FAAP20-204ENST00000400919 1413 ntTSL 3 BASIC12.6□□□□□ -0.39
USH2AO75445 MPND-207ENST00000599840 1611 ntAPPRIS ALT2 TSL 5 BASIC12.59□□□□□ -0.39
USH2AO75445 ARRDC1-201ENST00000371421 1586 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
USH2AO75445 CLEC3B-202ENST00000428034 752 ntTSL 2 BASIC12.59□□□□□ -0.39
USH2AO75445 MFAP2-202ENST00000375535 1260 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
USH2AO75445 NAA50-207ENST00000493900 962 ntAPPRIS ALT1 TSL 2 BASIC12.57□□□□□ -0.4
USH2AO75445 MAPK1-202ENST00000398822 1487 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
USH2AO75445 RP9P-201ENST00000381639 1303 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
USH2AO75445 AC005540.1-201ENST00000413911 919 ntTSL 3 BASIC12.56□□□□□ -0.4
USH2AO75445 CCDC149-203ENST00000502801 1079 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
USH2AO75445 ACOT7-209ENST00000545482 1804 ntAPPRIS ALT2 TSL 1 (best) BASIC12.55□□□□□ -0.4
USH2AO75445 C1orf232-201ENST00000634842 643 ntAPPRIS P5 TSL 5 BASIC12.55□□□□□ -0.4
USH2AO75445 CAPNS1-216ENST00000628306 1389 ntTSL 5 BASIC12.55□□□□□ -0.4
USH2AO75445 GIPC1-202ENST00000393028 1483 ntTSL 3 BASIC12.55□□□□□ -0.4
USH2AO75445 VEGFA-208ENST00000417285 1081 ntAPPRIS ALT2 TSL 1 (best) BASIC12.55□□□□□ -0.4
USH2AO75445 PIGX-201ENST00000296333 953 ntAPPRIS ALT2 TSL 2 BASIC12.55□□□□□ -0.4
USH2AO75445 GDI1-215ENST00000630693 786 ntTSL 4 BASIC12.55□□□□□ -0.4
USH2AO75445 MRPL51-201ENST00000229238 1234 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
USH2AO75445 ING2-201ENST00000302327 1189 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
USH2AO75445 FAAP20-202ENST00000378546 729 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
USH2AO75445 DCUN1D5-201ENST00000260247 1337 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
USH2AO75445 P2RX2-203ENST00000350048 1344 ntTSL 1 (best) BASIC12.52□□□□□ -0.4
USH2AO75445 BRF1-213ENST00000548421 1452 ntTSL 1 (best) BASIC12.52□□□□□ -0.4
USH2AO75445 SLC35D2-203ENST00000375259 1361 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
USH2AO75445 PSMG4-202ENST00000380305 489 ntTSL 5 BASIC12.51□□□□□ -0.41
USH2AO75445 HINT2-201ENST00000259667 628 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
USH2AO75445 AGPS-202ENST00000409888 815 ntTSL 4 BASIC12.5□□□□□ -0.41
USH2AO75445 ACOT1-202ENST00000557556 1271 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
USH2AO75445 CMAS-201ENST00000229329 1787 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
USH2AO75445 PTPMT1-203ENST00000426530 1014 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
USH2AO75445 MXD3-208ENST00000513063 861 ntAPPRIS P1 TSL 5 BASIC12.49□□□□□ -0.41
USH2AO75445 AP000911.3-201ENST00000526377 1130 ntTSL 3 BASIC12.49□□□□□ -0.41
USH2AO75445 ABHD17AP5-201ENST00000580133 923 ntBASIC12.49□□□□□ -0.41
USH2AO75445 SSU72-201ENST00000291386 1290 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
USH2AO75445 MAPK3-205ENST00000395202 1008 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
USH2AO75445 RCE1-201ENST00000309657 1485 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
USH2AO75445 HNRNPUL1-221ENST00000617305 1018 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
USH2AO75445 PLEKHJ1-201ENST00000326631 1206 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
USH2AO75445 GADD45G-201ENST00000252506 1065 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
USH2AO75445 PARD6A-201ENST00000219255 1248 ntAPPRIS P3 TSL 1 (best) BASIC12.47□□□□□ -0.41
USH2AO75445 MMP28-203ENST00000612672 1092 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
USH2AO75445 SSTR4-201ENST00000255008 1427 ntAPPRIS P1 BASIC12.47□□□□□ -0.41
USH2AO75445 CIB2-204ENST00000557846 934 ntTSL 3 BASIC12.47□□□□□ -0.41
USH2AO75445 DUX4L11-201ENST00000611504 1267 ntBASIC12.47□□□□□ -0.41
USH2AO75445 DUX4L12-201ENST00000614593 1267 ntBASIC12.47□□□□□ -0.41
USH2AO75445 DUX4L14-201ENST00000621227 1267 ntBASIC12.47□□□□□ -0.41
USH2AO75445 DTNBP1-212ENST00000622898 1305 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
USH2AO75445 MIR6090-201ENST00000622481 60 ntBASIC12.47□□□□□ -0.41
USH2AO75445 MRPL9-201ENST00000368829 882 ntAPPRIS ALT2 TSL 2 BASIC12.46□□□□□ -0.41
USH2AO75445 AL589765.4-201ENST00000512280 382 ntTSL 3 BASIC12.46□□□□□ -0.41
USH2AO75445 MAD2L2-205ENST00000376669 864 ntTSL 3 BASIC12.46□□□□□ -0.41
USH2AO75445 GTF3C4-202ENST00000483873 1417 ntTSL 3 BASIC12.46□□□□□ -0.42
USH2AO75445 KCTD17-209ENST00000610767 1502 ntAPPRIS ALT2 TSL 3 BASIC12.44□□□□□ -0.42
USH2AO75445 RNF126P1-201ENST00000567452 1320 ntBASIC12.44□□□□□ -0.42
USH2AO75445 NMB-202ENST00000394588 1017 ntTSL 1 (best) BASIC12.44□□□□□ -0.42
USH2AO75445 LINC01971-201ENST00000617888 1048 ntBASIC12.44□□□□□ -0.42
USH2AO75445 STARD10-220ENST00000545082 1085 ntTSL 3 BASIC12.43□□□□□ -0.42
USH2AO75445 GRK2-204ENST00000526285 1458 ntTSL 5 BASIC12.43□□□□□ -0.42
USH2AO75445 MNX1-207ENST00000543409 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC12.43□□□□□ -0.42
USH2AO75445 RPS2-209ENST00000529806 993 ntTSL 3 BASIC12.42□□□□□ -0.42
USH2AO75445 AL592295.1-201ENST00000400984 884 ntBASIC12.42□□□□□ -0.42
USH2AO75445 METRNL-202ENST00000570778 967 ntTSL 5 BASIC12.42□□□□□ -0.42
Retrieved 100 of 98,524 protein–RNA pairs in 48.2 ms