Protein–RNA interactions for Protein: A0A0B4J266

TRAV41, T-cell receptor alpha variable 41 (Fragment), humanhuman

Predictions only

Length 112 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV41A0A0B4J266 CCNYL1-205ENST00000420822 952 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
TRAV41A0A0B4J266 IFNGR2-201ENST00000290219 2221 ntAPPRIS P3 TSL 1 (best) BASIC21.37■■□□□ 1.01
TRAV41A0A0B4J266 CERS1-201ENST00000429504 2094 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
TRAV41A0A0B4J266 ACTR3B-202ENST00000377776 1566 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
TRAV41A0A0B4J266 PDCD2-215ENST00000614056 1287 ntTSL 2 BASIC21.36■■□□□ 1.01
TRAV41A0A0B4J266 WASH5P-204ENST00000632292 975 ntBASIC21.36■■□□□ 1.01
TRAV41A0A0B4J266 TRNP1-201ENST00000522111 1958 ntAPPRIS P2 TSL 1 (best) BASIC21.36■■□□□ 1.01
TRAV41A0A0B4J266 AC092647.5-201ENST00000426595 1732 ntAPPRIS P1 TSL 5 BASIC21.35■■□□□ 1.01
TRAV41A0A0B4J266 TUSC1-201ENST00000358022 2052 ntAPPRIS P1 BASIC21.34■■□□□ 1.01
TRAV41A0A0B4J266 COMMD3-201ENST00000376836 1342 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
TRAV41A0A0B4J266 NRG3-203ENST00000404547 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC21.33■■□□□ 1
TRAV41A0A0B4J266 AL391121.1-201ENST00000607967 1349 ntBASIC21.32■■□□□ 1
TRAV41A0A0B4J266 E2F4-201ENST00000379378 2096 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
TRAV41A0A0B4J266 HDAC3-201ENST00000305264 1959 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
TRAV41A0A0B4J266 FGF3-201ENST00000334134 892 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
TRAV41A0A0B4J266 CAHM-201ENST00000604200 896 ntBASIC21.31■■□□□ 1
TRAV41A0A0B4J266 POU3F1-201ENST00000373012 2184 ntAPPRIS P1 BASIC21.3■■□□□ 1
TRAV41A0A0B4J266 EBPL-202ENST00000378268 680 ntTSL 3 BASIC21.28■■□□□ 1
TRAV41A0A0B4J266 AC092755.2-201ENST00000560199 402 ntTSL 3 BASIC21.28■■□□□ 1
TRAV41A0A0B4J266 ZBTB7A-202ENST00000601588 2083 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
TRAV41A0A0B4J266 ZBTB12-201ENST00000375527 1875 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
TRAV41A0A0B4J266 DUSP15-202ENST00000339738 1454 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
TRAV41A0A0B4J266 RHOC-208ENST00000369642 1355 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
TRAV41A0A0B4J266 HOXD-AS2-202ENST00000440016 999 ntTSL 5 BASIC21.27■■□□□ 1
TRAV41A0A0B4J266 AC234582.1-201ENST00000447623 923 ntTSL 5 BASIC21.27■■□□□ 1
TRAV41A0A0B4J266 RNF150-204ENST00000507500 1530 ntTSL 1 (best) BASIC21.27■■□□□ 1
TRAV41A0A0B4J266 FTCD-202ENST00000397743 1834 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
TRAV41A0A0B4J266 TFEB-204ENST00000373033 2331 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
TRAV41A0A0B4J266 SSBP4-202ENST00000348495 1721 ntAPPRIS ALT1 TSL 2 BASIC21.25■□□□□ 0.99
TRAV41A0A0B4J266 ABHD17A-201ENST00000250974 1630 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
TRAV41A0A0B4J266 FTCD-203ENST00000397746 1878 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
TRAV41A0A0B4J266 INPP5A-202ENST00000368593 1432 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
TRAV41A0A0B4J266 GNPTAB-202ENST00000392919 760 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
TRAV41A0A0B4J266 GLT8D1-201ENST00000266014 1849 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
TRAV41A0A0B4J266 SUZ12P1-203ENST00000578195 985 ntBASIC21.22■□□□□ 0.99
TRAV41A0A0B4J266 FOXD3-201ENST00000371116 2086 ntAPPRIS P1 BASIC21.22■□□□□ 0.99
TRAV41A0A0B4J266 PSMG4-205ENST00000419065 629 ntTSL 2 BASIC21.21■□□□□ 0.99
TRAV41A0A0B4J266 LMO1-202ENST00000428101 1038 ntAPPRIS ALT1 TSL 1 (best) BASIC21.2■□□□□ 0.98
TRAV41A0A0B4J266 SEC61G-204ENST00000450622 512 ntAPPRIS P1 TSL 2 BASIC21.19■□□□□ 0.98
TRAV41A0A0B4J266 CAPNS1-217ENST00000629983 799 ntTSL 5 BASIC21.19■□□□□ 0.98
TRAV41A0A0B4J266 KCNQ5-204ENST00000370392 1469 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
TRAV41A0A0B4J266 KCNK3-202ENST00000620977 1956 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
TRAV41A0A0B4J266 ELK4-201ENST00000289703 2118 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
TRAV41A0A0B4J266 CNIH2-203ENST00000528852 1524 ntAPPRIS ALT1 TSL 1 (best) BASIC21.16■□□□□ 0.98
TRAV41A0A0B4J266 HOPX-206ENST00000503639 1248 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
TRAV41A0A0B4J266 CACNG6-202ENST00000346968 645 ntTSL 5 BASIC21.15■□□□□ 0.98
TRAV41A0A0B4J266 GSC2-201ENST00000086933 1033 ntAPPRIS P1 TSL 5 BASIC21.15■□□□□ 0.98
TRAV41A0A0B4J266 CERS2-201ENST00000271688 2544 ntAPPRIS P1 TSL 5 BASIC21.15■□□□□ 0.98
TRAV41A0A0B4J266 TAZ-215ENST00000612460 1793 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
TRAV41A0A0B4J266 HNRNPAB-206ENST00000506339 1747 ntAPPRIS ALT2 TSL 5 BASIC21.14■□□□□ 0.97
TRAV41A0A0B4J266 ST7-208ENST00000393451 2110 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
TRAV41A0A0B4J266 PANK2-207ENST00000610179 1807 ntAPPRIS ALT2 TSL 1 (best) BASIC21.13■□□□□ 0.97
TRAV41A0A0B4J266 DENR-202ENST00000455982 1052 ntTSL 5 BASIC21.12■□□□□ 0.97
TRAV41A0A0B4J266 MLST8-203ENST00000397124 1691 ntAPPRIS P3 TSL 5 BASIC21.12■□□□□ 0.97
TRAV41A0A0B4J266 TSPAN11-203ENST00000545802 1649 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
TRAV41A0A0B4J266 TPGS1-201ENST00000359315 1114 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
TRAV41A0A0B4J266 S100A10-202ENST00000368811 1202 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
TRAV41A0A0B4J266 LYNX1-208ENST00000615007 1293 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
TRAV41A0A0B4J266 CGREF1-204ENST00000402550 1575 ntTSL 2 BASIC21.1■□□□□ 0.97
TRAV41A0A0B4J266 DPF1-204ENST00000416611 2341 ntTSL 5 BASIC21.1■□□□□ 0.97
TRAV41A0A0B4J266 SSU72-201ENST00000291386 1290 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
TRAV41A0A0B4J266 SLC9A3R2-202ENST00000432365 1564 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
TRAV41A0A0B4J266 FAM89B-201ENST00000316409 1409 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
TRAV41A0A0B4J266 CGGBP1-206ENST00000482016 1147 ntAPPRIS P1 TSL 2 BASIC21.08■□□□□ 0.97
TRAV41A0A0B4J266 TPRG1L-202ENST00000378344 2414 ntAPPRIS P1 TSL 2 BASIC21.08■□□□□ 0.96
TRAV41A0A0B4J266 AL161658.1-201ENST00000623641 1967 ntBASIC21.08■□□□□ 0.96
TRAV41A0A0B4J266 COL13A1-212ENST00000520133 1833 ntTSL 5 BASIC21.08■□□□□ 0.96
TRAV41A0A0B4J266 NMB-201ENST00000360476 1007 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
TRAV41A0A0B4J266 GSTP1-202ENST00000398606 965 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
TRAV41A0A0B4J266 LFNG-201ENST00000222725 2377 ntAPPRIS P4 TSL 5 BASIC21.07■□□□□ 0.96
TRAV41A0A0B4J266 MSX1-201ENST00000382723 1939 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
TRAV41A0A0B4J266 ATRAID-201ENST00000380171 1240 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
TRAV41A0A0B4J266 FAM78B-202ENST00000354422 1475 ntAPPRIS P1 TSL 2 BASIC21.06■□□□□ 0.96
TRAV41A0A0B4J266 H2AFV-205ENST00000381124 628 ntTSL 3 BASIC21.05■□□□□ 0.96
TRAV41A0A0B4J266 HOXB3-210ENST00000489475 1845 ntTSL 2 BASIC21.05■□□□□ 0.96
TRAV41A0A0B4J266 HNRNPLP2-201ENST00000568980 1570 ntBASIC21.05■□□□□ 0.96
TRAV41A0A0B4J266 MBOAT7-203ENST00000391754 1797 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
TRAV41A0A0B4J266 LZTS2-201ENST00000370220 5741 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
TRAV41A0A0B4J266 CRIP1-201ENST00000330233 1311 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
TRAV41A0A0B4J266 FADS3-201ENST00000278829 1779 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
TRAV41A0A0B4J266 MIR762-201ENST00000390236 83 ntBASIC21.03■□□□□ 0.96
TRAV41A0A0B4J266 KLHL35-204ENST00000539798 1936 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
TRAV41A0A0B4J266 ABHD12-201ENST00000339157 2117 ntAPPRIS P1 TSL 2 BASIC21.02■□□□□ 0.96
TRAV41A0A0B4J266 MXD3-203ENST00000439742 1483 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
TRAV41A0A0B4J266 CHML-205ENST00000638160 705 ntTSL 3 BASIC21.02■□□□□ 0.96
TRAV41A0A0B4J266 DUSP14-206ENST00000617516 1537 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
TRAV41A0A0B4J266 SHC2-201ENST00000264554 2494 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
TRAV41A0A0B4J266 UCK1-201ENST00000372208 2063 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
TRAV41A0A0B4J266 PCYT2-206ENST00000571105 1628 ntTSL 5 BASIC21.01■□□□□ 0.95
TRAV41A0A0B4J266 AGPAT2-202ENST00000371696 1512 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
TRAV41A0A0B4J266 HES7-202ENST00000541682 1674 ntAPPRIS ALT1 TSL 1 (best) BASIC21.01■□□□□ 0.95
TRAV41A0A0B4J266 HSD11B1L-209ENST00000577917 1553 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
TRAV41A0A0B4J266 AC012629.2-201ENST00000606513 377 ntTSL 5 BASIC21■□□□□ 0.95
TRAV41A0A0B4J266 HMX1-201ENST00000400677 1895 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
TRAV41A0A0B4J266 MAPK12-201ENST00000215659 1918 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
TRAV41A0A0B4J266 UBE2L6-201ENST00000287156 1354 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
TRAV41A0A0B4J266 TXNRD2-204ENST00000400521 2115 ntAPPRIS P2 TSL 1 (best) BASIC20.98■□□□□ 0.95
TRAV41A0A0B4J266 RAMP2-AS1-202ENST00000589716 1985 ntTSL 5 BASIC20.98■□□□□ 0.95
TRAV41A0A0B4J266 AVEN-201ENST00000306730 1605 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
TRAV41A0A0B4J266 ECI1-203ENST00000562238 948 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
Retrieved 100 of 98,524 protein–RNA pairs in 16.3 ms