Protein–RNA interactions for Protein: Q9Y252

RNF6, E3 ubiquitin-protein ligase RNF6, humanhuman

Predictions only

Length 685 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF6Q9Y252 C18orf8-214ENST00000615148 1958 ntTSL 5 BASIC20.39■□□□□ 0.86
RNF6Q9Y252 C19orf12-204ENST00000392276 1912 ntTSL 1 (best) BASIC20.39■□□□□ 0.86
RNF6Q9Y252 AC079630.1-202ENST00000618127 1840 ntBASIC20.39■□□□□ 0.86
RNF6Q9Y252 IRF3-227ENST00000600911 1637 ntTSL 5 BASIC20.39■□□□□ 0.86
RNF6Q9Y252 DLEU2-208ENST00000621282 3068 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
RNF6Q9Y252 AC131274.2-201ENST00000580697 1507 ntBASIC20.39■□□□□ 0.85
RNF6Q9Y252 AKT2-206ENST00000392038 5300 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
RNF6Q9Y252 FAIM-203ENST00000393034 927 ntAPPRIS P3 TSL 2 BASIC20.39■□□□□ 0.85
RNF6Q9Y252 AC026271.2-201ENST00000428091 497 ntBASIC20.39■□□□□ 0.85
RNF6Q9Y252 AC105265.2-201ENST00000467189 838 ntBASIC20.39■□□□□ 0.85
RNF6Q9Y252 SNHG12-212ENST00000531126 719 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
RNF6Q9Y252 PMPCA-201ENST00000371717 2174 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
RNF6Q9Y252 SIGMAR1-201ENST00000277010 1656 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
RNF6Q9Y252 CCM2-206ENST00000474617 1532 ntTSL 5 BASIC20.38■□□□□ 0.85
RNF6Q9Y252 CTCF-202ENST00000401394 2978 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
RNF6Q9Y252 C1orf35-201ENST00000272139 1427 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
RNF6Q9Y252 SDSL-201ENST00000345635 1397 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
RNF6Q9Y252 CCDC107-205ENST00000421582 1324 ntAPPRIS ALT2 TSL 2 BASIC20.38■□□□□ 0.85
RNF6Q9Y252 CROT-202ENST00000412227 1213 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
RNF6Q9Y252 SDHAP1-204ENST00000427415 559 ntTSL 4 BASIC20.38■□□□□ 0.85
RNF6Q9Y252 VAMP2-204ENST00000488857 874 ntAPPRIS ALT1 TSL 3 BASIC20.38■□□□□ 0.85
RNF6Q9Y252 AF213884.3-201ENST00000563833 479 ntBASIC20.38■□□□□ 0.85
RNF6Q9Y252 ARHGDIA-217ENST00000584461 886 ntTSL 2 BASIC20.38■□□□□ 0.85
RNF6Q9Y252 ACBD4-216ENST00000619916 1276 ntTSL 5 BASIC20.38■□□□□ 0.85
RNF6Q9Y252 AL136967.2-201ENST00000623968 743 ntBASIC20.38■□□□□ 0.85
RNF6Q9Y252 SLC25A24-204ENST00000569674 2357 ntBASIC20.38■□□□□ 0.85
RNF6Q9Y252 SH3YL1-201ENST00000356150 1763 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
RNF6Q9Y252 HNRNPD-202ENST00000352301 1667 ntAPPRIS ALT1 TSL 1 (best) BASIC20.38■□□□□ 0.85
RNF6Q9Y252 PDZRN4-202ENST00000402685 3347 ntAPPRIS P1 TSL 2 BASIC20.38■□□□□ 0.85
RNF6Q9Y252 ZDHHC16-203ENST00000353979 1647 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
RNF6Q9Y252 SYT6-210ENST00000641643 1587 ntBASIC20.38■□□□□ 0.85
RNF6Q9Y252 SLC35F4-206ENST00000556826 1908 ntAPPRIS P1 TSL 5 BASIC20.37■□□□□ 0.85
RNF6Q9Y252 NIPSNAP2-205ENST00000446778 1882 ntTSL 2 BASIC20.37■□□□□ 0.85
RNF6Q9Y252 BIN1-209ENST00000393040 2293 ntAPPRIS ALT2 TSL 1 (best) BASIC20.37■□□□□ 0.85
RNF6Q9Y252 KCNN4-201ENST00000262888 2240 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
RNF6Q9Y252 CNEP1R1-202ENST00000427478 2117 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
RNF6Q9Y252 PRELID1-203ENST00000503216 1171 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
RNF6Q9Y252 SERGEF-219ENST00000532265 1124 ntTSL 2 BASIC20.37■□□□□ 0.85
RNF6Q9Y252 AC092171.4-201ENST00000609130 632 ntBASIC20.37■□□□□ 0.85
RNF6Q9Y252 SF1-220ENST00000626028 704 ntTSL 2 BASIC20.37■□□□□ 0.85
RNF6Q9Y252 WRAP73-201ENST00000270708 1665 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
RNF6Q9Y252 ANKRD13D-202ENST00000447274 2881 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
RNF6Q9Y252 FAM19A5-202ENST00000358295 2638 ntAPPRIS P1 TSL 2 BASIC20.37■□□□□ 0.85
RNF6Q9Y252 PNRC1-201ENST00000336032 2065 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
RNF6Q9Y252 OSCAR-203ENST00000356532 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC20.36■□□□□ 0.85
RNF6Q9Y252 OSCAR-204ENST00000358375 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC20.36■□□□□ 0.85
RNF6Q9Y252 OSCAR-210ENST00000616447 1358 ntAPPRIS ALT2 TSL 5 BASIC20.36■□□□□ 0.85
RNF6Q9Y252 IRX4-206ENST00000513692 2391 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
RNF6Q9Y252 P4HTM-201ENST00000343546 2268 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
RNF6Q9Y252 ZNF264-206ENST00000600531 774 ntTSL 2 BASIC20.36■□□□□ 0.85
RNF6Q9Y252 SLC35A3-216ENST00000639221 1032 ntTSL 5 BASIC20.36■□□□□ 0.85
RNF6Q9Y252 BAG1-212ENST00000641048 1038 ntAPPRIS P3 BASIC20.36■□□□□ 0.85
RNF6Q9Y252 ILDR2-204ENST00000525740 2242 ntTSL 5 BASIC20.36■□□□□ 0.85
RNF6Q9Y252 PTPN18-202ENST00000347849 2472 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
RNF6Q9Y252 MED25-211ENST00000617849 1548 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
RNF6Q9Y252 NFKBID-201ENST00000396901 1834 ntAPPRIS P2 TSL 1 (best) BASIC20.36■□□□□ 0.85
RNF6Q9Y252 NFKBID-211ENST00000641389 1834 ntAPPRIS ALT2 BASIC20.36■□□□□ 0.85
RNF6Q9Y252 SIRT3-204ENST00000525319 1475 ntAPPRIS ALT2 TSL 2 BASIC20.36■□□□□ 0.85
RNF6Q9Y252 ATAD3A-202ENST00000378755 2612 ntTSL 2 BASIC20.36■□□□□ 0.85
RNF6Q9Y252 CXCL14-201ENST00000337225 1971 ntAPPRIS P2 TSL 1 (best) BASIC20.35■□□□□ 0.85
RNF6Q9Y252 TGIF1-206ENST00000405385 1689 ntTSL 2 BASIC20.35■□□□□ 0.85
RNF6Q9Y252 NRXN2-205ENST00000409571 6381 ntAPPRIS ALT2 TSL 5 BASIC20.35■□□□□ 0.85
RNF6Q9Y252 TMEM25-205ENST00000411589 2442 ntAPPRIS ALT2 TSL 2 BASIC20.35■□□□□ 0.85
RNF6Q9Y252 ST7L-201ENST00000343210 1866 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
RNF6Q9Y252 HOXC8-201ENST00000040584 1889 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
RNF6Q9Y252 SLC19A1-209ENST00000485649 1896 ntAPPRIS ALT2 TSL 2 BASIC20.35■□□□□ 0.85
RNF6Q9Y252 ZFYVE19-201ENST00000299173 1555 ntAPPRIS ALT2 TSL 1 (best) BASIC20.35■□□□□ 0.85
RNF6Q9Y252 IRF3-228ENST00000601291 1556 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
RNF6Q9Y252 PRADC1-201ENST00000258083 1083 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
RNF6Q9Y252 MIR939-201ENST00000401314 82 ntBASIC20.35■□□□□ 0.85
RNF6Q9Y252 CLPSL2-202ENST00000403376 405 ntAPPRIS P3 TSL 1 (best) BASIC20.35■□□□□ 0.85
RNF6Q9Y252 STK32C-205ENST00000456004 607 ntTSL 2 BASIC20.35■□□□□ 0.85
RNF6Q9Y252 CAMTA1-208ENST00000473578 567 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
RNF6Q9Y252 AC092666.2-201ENST00000613287 246 ntBASIC20.35■□□□□ 0.85
RNF6Q9Y252 GPR137B-202ENST00000366592 2042 ntAPPRIS P2 TSL 1 (best) BASIC20.35■□□□□ 0.85
RNF6Q9Y252 RITA1-202ENST00000549621 2041 ntAPPRIS P1 TSL 2 BASIC20.35■□□□□ 0.85
RNF6Q9Y252 HSD11B1L-217ENST00000581521 1884 ntAPPRIS P3 TSL 5 BASIC20.35■□□□□ 0.85
RNF6Q9Y252 POC1B-209ENST00000549035 2038 ntTSL 2 BASIC20.34■□□□□ 0.85
RNF6Q9Y252 APOE-201ENST00000252486 1208 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
RNF6Q9Y252 HSPE1-203ENST00000409729 478 ntTSL 2 BASIC20.34■□□□□ 0.85
RNF6Q9Y252 AP001330.3-201ENST00000520123 633 ntBASIC20.34■□□□□ 0.85
RNF6Q9Y252 GJD3-201ENST00000578689 885 ntAPPRIS P1 BASIC20.34■□□□□ 0.85
RNF6Q9Y252 MANEAL-203ENST00000397631 2327 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
RNF6Q9Y252 AL606970.3-201ENST00000446811 2246 ntTSL 2 BASIC20.34■□□□□ 0.85
RNF6Q9Y252 AC009126.1-201ENST00000501338 2245 ntTSL 2 BASIC20.34■□□□□ 0.85
RNF6Q9Y252 LLGL2-202ENST00000375227 1374 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
RNF6Q9Y252 GNB1-209ENST00000610897 3145 ntAPPRIS P1 TSL 5 BASIC20.33■□□□□ 0.85
RNF6Q9Y252 LINC00092-201ENST00000412122 1726 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
RNF6Q9Y252 LAMTOR1-201ENST00000278671 1179 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
RNF6Q9Y252 ZDHHC16-205ENST00000370846 1280 ntTSL 3 BASIC20.33■□□□□ 0.85
RNF6Q9Y252 SRPK3-202ENST00000370101 1958 ntAPPRIS P3 TSL 1 (best) BASIC20.33■□□□□ 0.84
RNF6Q9Y252 PDLIM2-216ENST00000464275 1995 ntTSL 2 BASIC20.33■□□□□ 0.84
RNF6Q9Y252 AC080038.3-201ENST00000623346 1952 ntBASIC20.33■□□□□ 0.84
RNF6Q9Y252 CCDC92-209ENST00000545891 1790 ntAPPRIS P1 TSL 2 BASIC20.33■□□□□ 0.84
RNF6Q9Y252 CNTFR-202ENST00000378980 2052 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
RNF6Q9Y252 FBXW4P1-201ENST00000426721 2239 ntBASIC20.33■□□□□ 0.84
RNF6Q9Y252 RPP38-207ENST00000616640 1537 ntAPPRIS P1 TSL 2 BASIC20.32■□□□□ 0.84
RNF6Q9Y252 LRCH4-209ENST00000497245 2014 ntTSL 5 BASIC20.32■□□□□ 0.84
RNF6Q9Y252 KAT2B-201ENST00000263754 4833 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
RNF6Q9Y252 DNAJA4-202ENST00000394852 3116 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 34.7 ms