Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 TRIM28-201ENST00000253024 2960 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
SDC1P18827 GTPBP6-201ENST00000326153 1907 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
SDC1P18827 SELENOO-201ENST00000380903 2315 ntAPPRIS P2 TSL 1 (best) BASIC20.75■□□□□ 0.91
SDC1P18827 SELENOO-203ENST00000611222 2311 ntAPPRIS ALT2 TSL 5 BASIC20.75■□□□□ 0.91
SDC1P18827 FAM173A-201ENST00000219535 806 ntAPPRIS ALT2 TSL 2 BASIC20.75■□□□□ 0.91
SDC1P18827 C2orf82-201ENST00000331342 465 ntAPPRIS P2 TSL 1 (best) BASIC20.75■□□□□ 0.91
SDC1P18827 ACYP2-202ENST00000394666 993 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
SDC1P18827 CCDC189-211ENST00000545825 1046 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
SDC1P18827 BICDL2-201ENST00000389347 1811 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
SDC1P18827 MESP1-201ENST00000300057 2369 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
SDC1P18827 HTATIP2-204ENST00000451739 1748 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
SDC1P18827 GRK4-201ENST00000345167 2013 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
SDC1P18827 ELOA-201ENST00000418390 5154 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
SDC1P18827 AL121749.1-201ENST00000635993 1768 ntTSL 5 BASIC20.74■□□□□ 0.91
SDC1P18827 QDPR-206ENST00000508623 601 ntTSL 3 BASIC20.74■□□□□ 0.91
SDC1P18827 MPPED1-203ENST00000443721 2507 ntAPPRIS P1 TSL 2 BASIC20.74■□□□□ 0.91
SDC1P18827 GMDS-202ENST00000380815 1752 ntAPPRIS P3 TSL 1 (best) BASIC20.74■□□□□ 0.91
SDC1P18827 FAM167A-204ENST00000528897 1620 ntAPPRIS P1 TSL 2 BASIC20.74■□□□□ 0.91
SDC1P18827 RNF180-201ENST00000296615 1727 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
SDC1P18827 DPP7-201ENST00000371579 1590 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
SDC1P18827 GATA2-AS1-201ENST00000464242 1163 ntTSL 2 BASIC20.73■□□□□ 0.91
SDC1P18827 ACYP1-205ENST00000555463 789 ntTSL 2 BASIC20.73■□□□□ 0.91
SDC1P18827 LY6H-205ENST00000615409 980 ntAPPRIS P3 TSL 1 (best) BASIC20.73■□□□□ 0.91
SDC1P18827 HAUS7-211ENST00000626181 414 ntAPPRIS ALT2 TSL 5 BASIC20.73■□□□□ 0.91
SDC1P18827 MAGI2-217ENST00000629359 6704 ntTSL 5 BASIC20.73■□□□□ 0.91
SDC1P18827 TMEM9B-201ENST00000309134 1659 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
SDC1P18827 ILDR2-206ENST00000528703 2446 ntAPPRIS ALT2 TSL 5 BASIC20.73■□□□□ 0.91
SDC1P18827 EXOSC6-201ENST00000435634 5153 ntAPPRIS P1 BASIC20.73■□□□□ 0.91
SDC1P18827 CFAP99-206ENST00000616117 1941 ntAPPRIS P1 TSL 5 BASIC20.72■□□□□ 0.91
SDC1P18827 VPS9D1-AS1-202ENST00000562866 1753 ntTSL 2 BASIC20.72■□□□□ 0.91
SDC1P18827 EIF2B4-211ENST00000616081 1754 ntTSL 5 BASIC20.72■□□□□ 0.91
SDC1P18827 JUNB-201ENST00000302754 1820 ntAPPRIS P1 BASIC20.72■□□□□ 0.91
SDC1P18827 GSX2-201ENST00000326902 1812 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
SDC1P18827 PDK3-201ENST00000379162 1809 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
SDC1P18827 MYD88-205ENST00000424893 1279 ntAPPRIS ALT2 TSL 1 (best) BASIC20.72■□□□□ 0.91
SDC1P18827 MIR3181-201ENST00000578512 73 ntBASIC20.72■□□□□ 0.91
SDC1P18827 AL512631.2-201ENST00000604634 923 ntBASIC20.72■□□□□ 0.91
SDC1P18827 ZNF37BP-201ENST00000435805 1695 ntTSL 5 BASIC20.72■□□□□ 0.91
SDC1P18827 B3GALT4-204ENST00000451237 1694 ntAPPRIS P1 BASIC20.72■□□□□ 0.91
SDC1P18827 IL15RA-206ENST00000397248 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC20.72■□□□□ 0.91
SDC1P18827 SOX18-201ENST00000340356 1864 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
SDC1P18827 PAQR6-202ENST00000335852 2117 ntTSL 2 BASIC20.71■□□□□ 0.91
SDC1P18827 MAIP1-201ENST00000295079 1495 ntAPPRIS P2 TSL 2 BASIC20.71■□□□□ 0.91
SDC1P18827 STX4-202ENST00000394998 1498 ntTSL 2 BASIC20.71■□□□□ 0.91
SDC1P18827 FBXW11-203ENST00000393802 2181 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
SDC1P18827 P2RX2-205ENST00000352418 1200 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
SDC1P18827 NAXE-201ENST00000368233 1012 ntTSL 2 BASIC20.71■□□□□ 0.91
SDC1P18827 C9orf47-202ENST00000375850 859 ntAPPRIS ALT2 TSL 3 BASIC20.71■□□□□ 0.91
SDC1P18827 AL122058.1-201ENST00000412321 1166 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
SDC1P18827 KRAS-204ENST00000557334 1052 ntTSL 5 BASIC20.71■□□□□ 0.91
SDC1P18827 FAM99A-202ENST00000538190 1989 ntBASIC20.71■□□□□ 0.91
SDC1P18827 NAGPA-202ENST00000381955 2100 ntTSL 5 BASIC20.71■□□□□ 0.91
SDC1P18827 TRIM67-203ENST00000449018 2166 ntTSL 1 (best) BASIC20.7■□□□□ 0.91
SDC1P18827 A1BG-201ENST00000263100 1722 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
SDC1P18827 FADS6-204ENST00000614223 2044 ntAPPRIS ALT2 TSL 5 BASIC20.7■□□□□ 0.9
SDC1P18827 SYNGR2-201ENST00000225777 2325 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
SDC1P18827 ATP6V0E2-204ENST00000464662 513 ntAPPRIS P1 TSL 2 BASIC20.7■□□□□ 0.9
SDC1P18827 FNDC11-204ENST00000615526 2954 ntAPPRIS P1 BASIC20.7■□□□□ 0.9
SDC1P18827 IGFBP1-202ENST00000457280 1601 ntAPPRIS ALT2 TSL 5 BASIC20.7■□□□□ 0.9
SDC1P18827 DISC1-205ENST00000366636 2224 ntAPPRIS P4 TSL 1 (best) BASIC20.7■□□□□ 0.9
SDC1P18827 ILDR2-204ENST00000525740 2242 ntTSL 5 BASIC20.7■□□□□ 0.9
SDC1P18827 SNRK-203ENST00000437827 1995 ntTSL 2 BASIC20.7■□□□□ 0.9
SDC1P18827 ERI3-201ENST00000372257 1684 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
SDC1P18827 HAUS7-202ENST00000370211 1363 ntAPPRIS P2 TSL 1 (best) BASIC20.7■□□□□ 0.9
SDC1P18827 EFS-203ENST00000429593 2610 ntTSL 2 BASIC20.7■□□□□ 0.9
SDC1P18827 CTGF-201ENST00000367976 2339 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
SDC1P18827 RUNDC3B-207ENST00000493037 2020 ntAPPRIS ALT2 TSL 1 (best) BASIC20.7■□□□□ 0.9
SDC1P18827 LGALS9C-201ENST00000328114 1730 ntAPPRIS P2 TSL 1 (best) BASIC20.7■□□□□ 0.9
SDC1P18827 NIPA2-205ENST00000539711 1412 ntTSL 2 BASIC20.7■□□□□ 0.9
SDC1P18827 MATK-203ENST00000395045 2073 ntAPPRIS P4 TSL 2 BASIC20.69■□□□□ 0.9
SDC1P18827 AC074143.1-203ENST00000518227 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
SDC1P18827 ZSCAN18-217ENST00000601144 2190 ntAPPRIS P3 TSL 1 (best) BASIC20.69■□□□□ 0.9
SDC1P18827 TBX1-203ENST00000359500 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
SDC1P18827 GCH1-206ENST00000543643 1897 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
SDC1P18827 RANBP10-202ENST00000448631 2232 ntTSL 2 BASIC20.69■□□□□ 0.9
SDC1P18827 OLIG2-202ENST00000382357 2578 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
SDC1P18827 MIS18A-201ENST00000290130 1575 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
SDC1P18827 DECR2-201ENST00000219481 1615 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
SDC1P18827 USP45-205ENST00000472914 1617 ntTSL 5 BASIC20.69■□□□□ 0.9
SDC1P18827 HSD17B14-201ENST00000263278 1238 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
SDC1P18827 TNFRSF6B-201ENST00000369996 1124 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
SDC1P18827 ADAMTS13-203ENST00000371910 1074 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
SDC1P18827 TRAPPC5-202ENST00000426877 765 ntAPPRIS P1 TSL 2 BASIC20.69■□□□□ 0.9
SDC1P18827 SRD5A1P1-201ENST00000442297 786 ntBASIC20.69■□□□□ 0.9
SDC1P18827 SMARCA5-AS1-201ENST00000500800 945 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
SDC1P18827 ARHGDIA-217ENST00000584461 886 ntTSL 2 BASIC20.69■□□□□ 0.9
SDC1P18827 SLC35A3-216ENST00000639221 1032 ntTSL 5 BASIC20.69■□□□□ 0.9
SDC1P18827 SYF2-201ENST00000236273 1345 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
SDC1P18827 CLDND1-202ENST00000394180 2228 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
SDC1P18827 BAALC-205ENST00000438105 2662 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
SDC1P18827 INPP1-201ENST00000322522 1919 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
SDC1P18827 SLC22A31-201ENST00000562855 1909 ntAPPRIS P1 TSL 5 BASIC20.68■□□□□ 0.9
SDC1P18827 MALT1-201ENST00000345724 2866 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
SDC1P18827 GRK3-203ENST00000619906 2873 ntTSL 5 BASIC20.68■□□□□ 0.9
SDC1P18827 LCK-214ENST00000619559 2099 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
SDC1P18827 C1orf174-201ENST00000361605 1666 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
SDC1P18827 XBP1-207ENST00000611155 1794 ntTSL 5 BASIC20.68■□□□□ 0.9
SDC1P18827 ANAPC13-201ENST00000354910 1209 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
SDC1P18827 AL356441.2-201ENST00000443009 864 ntBASIC20.68■□□□□ 0.9
SDC1P18827 AC084116.4-201ENST00000524320 484 ntTSL 2 BASIC20.68■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 107.4 ms