RNA–Protein interactions for RNA: ENST00000562866.1

VPS9D1-AS1-202, VPS9D1 antisense RNA 1, humanhuman

TSL 2 BASIC

Gene VPS9D1-AS1, Length 1,753 nt, Biotype antisense RNA, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-AS1-202ENST00000562866 NISCHQ9Y2I1 1504 aa46.36■■■■■ 5.01
VPS9D1-AS1-202ENST00000562866 CCDC180Q9P1Z9 1646 aa40.04■■■■■ 4
VPS9D1-AS1-202ENST00000562866 ZCCHC6Q5VYS8 1495 aaKnown RBP39.1■■■■□ 3.85
VPS9D1-AS1-202ENST00000562866 SHROOM4Q9ULL8 1493 aa38.41■■■■□ 3.74
VPS9D1-AS1-202ENST00000562866 DCAF1Q9Y4B6 1507 aa38.33■■■■□ 3.73
VPS9D1-AS1-202ENST00000562866 DCAF8L2P0C7V8 631 aa38.09■■■■□ 3.69
VPS9D1-AS1-202ENST00000562866 MYO15BQ96JP2 1530 aa37.58■■■■□ 3.61
VPS9D1-AS1-202ENST00000562866 SUPT5HO00267 1087 aaKnown RBP37.37■■■■□ 3.57
VPS9D1-AS1-202ENST00000562866 ABCC9O60706 1549 aa37.18■■■■□ 3.54
VPS9D1-AS1-202ENST00000562866 NACADO15069 1562 aa37.13■■■■□ 3.54
VPS9D1-AS1-202ENST00000562866 SCRIBQ14160 1630 aa36.96■■■■□ 3.51
VPS9D1-AS1-202ENST00000562866 RB1CC1Q8TDY2 1594 aa36.63■■■■□ 3.45
VPS9D1-AS1-202ENST00000562866 RSF1Q96T23 1441 aaPredicted RBP36.27■■■■□ 3.4
VPS9D1-AS1-202ENST00000562866 CHIC1Q5VXU3 224 aa36.17■■■■□ 3.38
VPS9D1-AS1-202ENST00000562866 CECR2Q9BXF3 1484 aa35.94■■■■□ 3.34
VPS9D1-AS1-202ENST00000562866 UNC13AQ9UPW8 1703 aa35.85■■■■□ 3.33
VPS9D1-AS1-202ENST00000562866 MROH2BQ7Z745 1585 aa35.84■■■■□ 3.33
VPS9D1-AS1-202ENST00000562866 BAZ1AQ9NRL2 1556 aaPredicted RBP35.75■■■■□ 3.31
VPS9D1-AS1-202ENST00000562866 WIZO95785 1651 aa35.58■■■■□ 3.29
VPS9D1-AS1-202ENST00000562866 SMARCA4P51532 1647 aa35.47■■■■□ 3.27
VPS9D1-AS1-202ENST00000562866 BICRAQ9NZM4 1560 aa35.47■■■■□ 3.27
VPS9D1-AS1-202ENST00000562866 TOP2AP11388 1531 aaKnown RBP35.26■■■■□ 3.23
VPS9D1-AS1-202ENST00000562866 PABPN1Q86U42 306 aaKnown RBP eCLIP35.23■■■■□ 3.23
VPS9D1-AS1-202ENST00000562866 TRIM41Q8WV44 630 aa35.1■■■■□ 3.21
VPS9D1-AS1-202ENST00000562866 PEG3Q9GZU2 1588 aa34.99■■■■□ 3.19
VPS9D1-AS1-202ENST00000562866 EIF4G1Q04637 1599 aaKnown RBP34.95■■■■□ 3.19
VPS9D1-AS1-202ENST00000562866 SMARCA2P51531 1590 aa34.94■■■■□ 3.18
VPS9D1-AS1-202ENST00000562866 CCDC88BA6NC98 1476 aa34.91■■■■□ 3.18
VPS9D1-AS1-202ENST00000562866 LOC105371045A0A1W2PR82 267 aa34.81■■■■□ 3.16
VPS9D1-AS1-202ENST00000562866 ATAD2BQ9ULI0 1458 aa34.7■■■■□ 3.14
VPS9D1-AS1-202ENST00000562866 BAZ1BQ9UIG0 1483 aaKnown RBP34.57■■■■□ 3.12
VPS9D1-AS1-202ENST00000562866 FAM9AQ8IZU1 332 aaPredicted RBP34.46■■■■□ 3.11
VPS9D1-AS1-202ENST00000562866 ABCC8Q09428 1581 aa34.42■■■■□ 3.1
VPS9D1-AS1-202ENST00000562866 HMGXB3Q12766 1538 aa34.28■■■■□ 3.08
VPS9D1-AS1-202ENST00000562866 NCAPD3P42695 1498 aa34.26■■■■□ 3.08
VPS9D1-AS1-202ENST00000562866 WRNQ14191 1432 aaPredicted RBP eCLIP34.14■■■■□ 3.06
VPS9D1-AS1-202ENST00000562866 EEA1Q15075 1411 aa34.11■■■■□ 3.05
VPS9D1-AS1-202ENST00000562866 PCGF6Q9BYE7 350 aa34.1■■■■□ 3.05
VPS9D1-AS1-202ENST00000562866 SOGA1O94964 1423 aa33.95■■■■□ 3.03
VPS9D1-AS1-202ENST00000562866 EHMT2Q96KQ7 1210 aa33.94■■■■□ 3.02
VPS9D1-AS1-202ENST00000562866 SYNJ1O43426 1573 aa33.94■■■■□ 3.02
VPS9D1-AS1-202ENST00000562866 TRIM26Q12899 539 aaPredicted RBP33.93■■■■□ 3.02
VPS9D1-AS1-202ENST00000562866 CSRNP3Q8WYN3 585 aa33.83■■■■□ 3.01
VPS9D1-AS1-202ENST00000562866 HRCP23327 699 aa33.78■■■■□ 3
VPS9D1-AS1-202ENST00000562866 RUSC2Q8N2Y8 1516 aa33.75■■■□□ 2.99
VPS9D1-AS1-202ENST00000562866 TOP2BQ02880 1626 aa33.75■■■□□ 2.99
VPS9D1-AS1-202ENST00000562866 CFTRP13569 1480 aa33.72■■■□□ 2.99
VPS9D1-AS1-202ENST00000562866 TNIKQ9UKE5 1360 aa33.7■■■□□ 2.99
VPS9D1-AS1-202ENST00000562866 BIVM-ERCC5R4GMW8 1640 aa33.69■■■□□ 2.98
VPS9D1-AS1-202ENST00000562866 GOLGA3Q08378 1498 aa33.66■■■□□ 2.98
VPS9D1-AS1-202ENST00000562866 CC2D2AQ9P2K1 1620 aa33.65■■■□□ 2.98
VPS9D1-AS1-202ENST00000562866 KIF21BO75037 1637 aa33.58■■■□□ 2.97
VPS9D1-AS1-202ENST00000562866 CEP164Q9UPV0 1460 aa33.58■■■□□ 2.97
VPS9D1-AS1-202ENST00000562866 PRDM2Q13029 1718 aa33.58■■■□□ 2.97
VPS9D1-AS1-202ENST00000562866 CEP162Q5TB80 1403 aa33.57■■■□□ 2.97
VPS9D1-AS1-202ENST00000562866 UBTFP17480 764 aaKnown RBP33.49■■■□□ 2.95
VPS9D1-AS1-202ENST00000562866 CUX1P39880 1505 aa33.46■■■□□ 2.95
VPS9D1-AS1-202ENST00000562866 CADPSQ9ULU8 1353 aa33.46■■■□□ 2.95
VPS9D1-AS1-202ENST00000562866 KIF27Q86VH2 1401 aa33.23■■■□□ 2.91
VPS9D1-AS1-202ENST00000562866 RAPGEF2Q9Y4G8 1499 aa33.23■■■□□ 2.91
VPS9D1-AS1-202ENST00000562866 ERICH3Q5RHP9 1530 aa33.22■■■□□ 2.91
VPS9D1-AS1-202ENST00000562866 PRXQ9BXM0 1461 aa33.17■■■□□ 2.9
VPS9D1-AS1-202ENST00000562866 CLIP1P30622 1438 aa33.14■■■□□ 2.9
VPS9D1-AS1-202ENST00000562866 PPARGC1BQ86YN6 1023 aaKnown RBP33.12■■■□□ 2.89
VPS9D1-AS1-202ENST00000562866 FANCD2Q9BXW9 1451 aa33.09■■■□□ 2.89
VPS9D1-AS1-202ENST00000562866 ZEB1P37275 1124 aaPredicted RBP33.05■■■□□ 2.88
VPS9D1-AS1-202ENST00000562866 FGD5Q6ZNL6 1462 aa32.99■■■□□ 2.87
VPS9D1-AS1-202ENST00000562866 LAMC3Q9Y6N6 1575 aa32.96■■■□□ 2.87
VPS9D1-AS1-202ENST00000562866 VPS8Q8N3P4 1428 aa32.96■■■□□ 2.87
VPS9D1-AS1-202ENST00000562866 CUX2O14529 1486 aa32.95■■■□□ 2.86
VPS9D1-AS1-202ENST00000562866 DNMBPQ6XZF7 1577 aa32.94■■■□□ 2.86
VPS9D1-AS1-202ENST00000562866 NESP48681 1621 aa32.87■■■□□ 2.85
VPS9D1-AS1-202ENST00000562866 IGF1RP08069 1367 aa32.82■■■□□ 2.85
VPS9D1-AS1-202ENST00000562866 TOPBP1Q92547 1522 aa32.81■■■□□ 2.84
VPS9D1-AS1-202ENST00000562866 APLP2Q06481 763 aa32.74■■■□□ 2.83
VPS9D1-AS1-202ENST00000562866 PDS5BQ9NTI5 1447 aa32.73■■■□□ 2.83
VPS9D1-AS1-202ENST00000562866 ABCA10Q8WWZ4 1543 aa32.72■■■□□ 2.83
VPS9D1-AS1-202ENST00000562866 TTBK1Q5TCY1 1321 aaPredicted RBP32.71■■■□□ 2.83
VPS9D1-AS1-202ENST00000562866 POLA1P09884 1462 aaPredicted RBP32.7■■■□□ 2.83
VPS9D1-AS1-202ENST00000562866 CARMIL1Q5VZK9 1371 aa32.69■■■□□ 2.82
VPS9D1-AS1-202ENST00000562866 RANGAP1P46060 587 aaPredicted RBP32.69■■■□□ 2.82
VPS9D1-AS1-202ENST00000562866 DNAJC5BQ9UF47 199 aa32.69■■■□□ 2.82
VPS9D1-AS1-202ENST00000562866 ARAP1Q96P48 1450 aa32.68■■■□□ 2.82
VPS9D1-AS1-202ENST00000562866 RAD54L2Q9Y4B4 1467 aa32.61■■■□□ 2.81
VPS9D1-AS1-202ENST00000562866 URB2Q14146 1524 aaKnown RBP32.61■■■□□ 2.81
VPS9D1-AS1-202ENST00000562866 ARHGAP35Q9NRY4 1499 aa32.54■■■□□ 2.8
VPS9D1-AS1-202ENST00000562866 CUL7Q14999 1698 aa32.51■■■□□ 2.8
VPS9D1-AS1-202ENST00000562866 WDR97A6NE52 1622 aa32.5■■■□□ 2.79
VPS9D1-AS1-202ENST00000562866 KIF21AQ7Z4S6 1674 aa32.47■■■□□ 2.79
VPS9D1-AS1-202ENST00000562866 CCER1Q8TC90 406 aaPredicted RBP32.47■■■□□ 2.79
VPS9D1-AS1-202ENST00000562866 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP32.44■■■□□ 2.78
VPS9D1-AS1-202ENST00000562866 ABCA5Q8WWZ7 1642 aa32.37■■■□□ 2.77
VPS9D1-AS1-202ENST00000562866 GAPVD1Q14C86 1478 aa32.29■■■□□ 2.76
VPS9D1-AS1-202ENST00000562866 MAP3K1Q13233 1512 aa32.26■■■□□ 2.75
VPS9D1-AS1-202ENST00000562866 MRC2Q9UBG0 1479 aa32.24■■■□□ 2.75
VPS9D1-AS1-202ENST00000562866 EFCAB5A4FU69 1503 aa32.24■■■□□ 2.75
VPS9D1-AS1-202ENST00000562866 CTTNBP2Q8WZ74 1663 aa32.24■■■□□ 2.75
VPS9D1-AS1-202ENST00000562866 TARBP1Q13395 1621 aaKnown RBP32.23■■■□□ 2.75
VPS9D1-AS1-202ENST00000562866 FHAD1B1AJZ9 1412 aa32.23■■■□□ 2.75
VPS9D1-AS1-202ENST00000562866 TDRD9Q8NDG6 1382 aaKnown RBP32.23■■■□□ 2.75
Retrieved 100 of 20,778 RNA–protein pairs in 54.3 ms