Protein–RNA interactions for Protein: O15116

LSM1, U6 snRNA-associated Sm-like protein LSm1, humanhuman

Known RBP Predictions only

Length 133 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1O15116 CACNB1-203ENST00000394310 1753 ntAPPRIS ALT1 TSL 1 (best) BASIC21.34■■□□□ 1.01
LSM1O15116 TANGO2-210ENST00000432883 2084 ntTSL 2 BASIC21.34■■□□□ 1.01
LSM1O15116 ADGRB1-202ENST00000517894 6241 ntAPPRIS P1 TSL 5 BASIC21.34■■□□□ 1.01
LSM1O15116 ANKHD1-221ENST00000616482 2064 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
LSM1O15116 ZFAND5-202ENST00000343431 1073 ntAPPRIS P1 TSL 5 BASIC21.34■■□□□ 1.01
LSM1O15116 MRPL23-202ENST00000381519 643 ntAPPRIS P1 TSL 3 BASIC21.34■■□□□ 1.01
LSM1O15116 MRPL23-205ENST00000397298 736 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
LSM1O15116 AC090587.2-201ENST00000430222 527 ntTSL 2 BASIC21.34■■□□□ 1.01
LSM1O15116 GAS2L1-206ENST00000610653 2238 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
LSM1O15116 FOSL1-202ENST00000448083 1427 ntTSL 2 BASIC21.34■■□□□ 1.01
LSM1O15116 SLC25A47-202ENST00000557052 1552 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
LSM1O15116 MYBL1-201ENST00000517885 1714 ntTSL 5 BASIC21.34■■□□□ 1.01
LSM1O15116 CRHR1-202ENST00000314537 2535 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
LSM1O15116 SLC25A5-AS1-202ENST00000445759 1616 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
LSM1O15116 NOTUM-201ENST00000409678 2329 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
LSM1O15116 LINC01116-201ENST00000295549 1407 ntTSL 2 BASIC21.33■■□□□ 1.01
LSM1O15116 EFCAB1-202ENST00000433756 2286 ntTSL 2 BASIC21.33■■□□□ 1.01
LSM1O15116 SH3GLB2-203ENST00000372564 2982 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
LSM1O15116 TMEM238-201ENST00000444469 1000 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
LSM1O15116 AC026785.2-201ENST00000511821 867 ntTSL 2 BASIC21.33■■□□□ 1.01
LSM1O15116 ACOT1-202ENST00000557556 1271 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
LSM1O15116 LINC01925-201ENST00000579492 500 ntTSL 5 BASIC21.33■■□□□ 1.01
LSM1O15116 AC112229.4-201ENST00000488671 1528 ntTSL 2 BASIC21.33■■□□□ 1
LSM1O15116 SLC35A3-204ENST00000427993 2062 ntAPPRIS P1 TSL 5 BASIC21.33■■□□□ 1
LSM1O15116 KEAP1-202ENST00000393623 2648 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
LSM1O15116 C14orf80-201ENST00000329886 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC21.33■■□□□ 1
LSM1O15116 NHLH1-201ENST00000302101 2563 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
LSM1O15116 SP9-201ENST00000394967 2554 ntAPPRIS P1 TSL 5 BASIC21.33■■□□□ 1
LSM1O15116 NR0B1-202ENST00000378970 2021 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
LSM1O15116 CACNB1-201ENST00000344140 1889 ntTSL 1 (best) BASIC21.32■■□□□ 1
LSM1O15116 SH2D3A-201ENST00000245908 2296 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
LSM1O15116 BIN1-209ENST00000393040 2293 ntAPPRIS ALT2 TSL 1 (best) BASIC21.32■■□□□ 1
LSM1O15116 AC087742.1-201ENST00000575880 1738 ntBASIC21.32■■□□□ 1
LSM1O15116 IRX4-201ENST00000231357 2221 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
LSM1O15116 CLTA-206ENST00000466396 695 ntTSL 2 BASIC21.32■■□□□ 1
LSM1O15116 PRTG-204ENST00000561292 833 ntTSL 3 BASIC21.32■■□□□ 1
LSM1O15116 AC009163.4-201ENST00000567194 530 ntAPPRIS P1 TSL 2 BASIC21.32■■□□□ 1
LSM1O15116 WDR86-201ENST00000334493 2023 ntAPPRIS P1 TSL 5 BASIC21.32■■□□□ 1
LSM1O15116 LACTBL1-201ENST00000426928 1641 ntAPPRIS P5 TSL 5 BASIC21.32■■□□□ 1
LSM1O15116 AC139530.1-201ENST00000575312 1977 ntBASIC21.32■■□□□ 1
LSM1O15116 LINC01529-204ENST00000636474 1715 ntBASIC21.32■■□□□ 1
LSM1O15116 TMEM200B-201ENST00000420504 2553 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
LSM1O15116 CDKN1C-202ENST00000414822 2051 ntAPPRIS P3 TSL 1 (best) BASIC21.32■■□□□ 1
LSM1O15116 GLT8D2-205ENST00000548660 1835 ntAPPRIS P1 TSL 2 BASIC21.32■■□□□ 1
LSM1O15116 GRM6-202ENST00000517717 2673 ntAPPRIS P1 TSL 5 BASIC21.32■■□□□ 1
LSM1O15116 DAZAP1-211ENST00000592522 2157 ntAPPRIS ALT1 TSL 5 BASIC21.31■■□□□ 1
LSM1O15116 TMEFF1-201ENST00000374879 2611 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
LSM1O15116 BCS1L-210ENST00000431802 2015 ntAPPRIS P1 TSL 2 BASIC21.31■■□□□ 1
LSM1O15116 ZNF843-201ENST00000315678 2137 ntAPPRIS P2 TSL 2 BASIC21.31■■□□□ 1
LSM1O15116 LMF1-202ENST00000543238 2103 ntTSL 2 BASIC21.31■■□□□ 1
LSM1O15116 FARP2-223ENST00000627550 2122 ntTSL 2 BASIC21.31■■□□□ 1
LSM1O15116 NRL-203ENST00000397002 1976 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
LSM1O15116 BX664725.1-201ENST00000438252 379 ntBASIC21.31■■□□□ 1
LSM1O15116 CACYBP-201ENST00000367679 2766 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
LSM1O15116 PRKAR1B-211ENST00000537384 2533 ntAPPRIS P1 TSL 5 BASIC21.31■■□□□ 1
LSM1O15116 RBM42-206ENST00000592202 1469 ntTSL 5 BASIC21.31■■□□□ 1
LSM1O15116 TMEM165-201ENST00000381334 1928 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
LSM1O15116 FNDC4-201ENST00000264703 1657 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
LSM1O15116 GADD45GIP1-201ENST00000316939 1782 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
LSM1O15116 JMJD1C-AS1-201ENST00000609436 1335 ntBASIC21.3■■□□□ 1
LSM1O15116 ST7L-201ENST00000343210 1866 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
LSM1O15116 RNF39-202ENST00000376751 1970 ntTSL 1 (best) BASIC21.3■■□□□ 1
LSM1O15116 TMEM44-211ENST00000473092 1508 ntTSL 1 (best) BASIC21.3■■□□□ 1
LSM1O15116 CCM2-206ENST00000474617 1532 ntTSL 5 BASIC21.3■■□□□ 1
LSM1O15116 DISC1-223ENST00000628350 2363 ntAPPRIS ALT2 TSL 1 (best) BASIC21.3■■□□□ 1
LSM1O15116 WRNIP1-203ENST00000380771 2595 ntTSL 1 (best) BASIC21.3■■□□□ 1
LSM1O15116 ARHGAP5-203ENST00000396582 5786 ntTSL 1 (best) BASIC21.3■■□□□ 1
LSM1O15116 AC105935.1-201ENST00000424174 422 ntTSL 3 BASIC21.3■■□□□ 1
LSM1O15116 FAHD1-204ENST00000615972 757 ntTSL 5 BASIC21.3■■□□□ 1
LSM1O15116 OSCAR-203ENST00000356532 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC21.3■■□□□ 1
LSM1O15116 OSCAR-204ENST00000358375 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC21.3■■□□□ 1
LSM1O15116 OSCAR-210ENST00000616447 1358 ntAPPRIS ALT2 TSL 5 BASIC21.3■■□□□ 1
LSM1O15116 TPI1-210ENST00000613953 1460 ntTSL 1 (best) BASIC21.3■■□□□ 1
LSM1O15116 IRX2-202ENST00000382611 2630 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
LSM1O15116 TCF7-201ENST00000342854 3045 ntAPPRIS P2 TSL 1 (best) BASIC21.3■■□□□ 1
LSM1O15116 NHLRC4-202ENST00000540585 2071 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
LSM1O15116 MRGPRF-203ENST00000441623 2282 ntAPPRIS P1 TSL 2 BASIC21.3■■□□□ 1
LSM1O15116 CCDC85B-201ENST00000312579 1524 ntAPPRIS P1 BASIC21.29■■□□□ 1
LSM1O15116 SPNS1-203ENST00000334536 2027 ntTSL 1 (best) BASIC21.29■■□□□ 1
LSM1O15116 CLN6-201ENST00000249806 2243 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
LSM1O15116 CACNB3-205ENST00000547392 2237 ntTSL 5 BASIC21.29■■□□□ 1
LSM1O15116 RNF165-205ENST00000588679 2904 ntBASIC21.29■■□□□ 1
LSM1O15116 PRKACA-201ENST00000308677 2677 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
LSM1O15116 NRXN2-204ENST00000377559 6413 ntAPPRIS ALT2 TSL 1 (best) BASIC21.29■■□□□ 1
LSM1O15116 POLD2-207ENST00000452185 1659 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
LSM1O15116 FP325331.1-202ENST00000623531 1380 ntBASIC21.29■■□□□ 1
LSM1O15116 EBPL-205ENST00000378284 967 ntTSL 1 (best) BASIC21.29■■□□□ 1
LSM1O15116 SMUG1-203ENST00000401977 1082 ntAPPRIS P1 TSL 5 BASIC21.29■■□□□ 1
LSM1O15116 DDN-AS1-202ENST00000547866 2114 ntTSL 3 BASIC21.29■■□□□ 1
LSM1O15116 RBM42-203ENST00000588161 1609 ntAPPRIS ALT1 TSL 1 (best) BASIC21.29■■□□□ 1
LSM1O15116 PDE5A-201ENST00000264805 3020 ntAPPRIS ALT2 TSL 1 (best) BASIC21.29■■□□□ 1
LSM1O15116 AC080038.3-201ENST00000623346 1952 ntBASIC21.28■■□□□ 1
LSM1O15116 HABP4-201ENST00000375249 2615 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
LSM1O15116 C20orf27-202ENST00000379772 1886 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
LSM1O15116 CHADL-201ENST00000216241 2533 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
LSM1O15116 FOXO1-201ENST00000379561 5735 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
LSM1O15116 GPRC5B-210ENST00000569847 1830 ntAPPRIS P2 TSL 2 BASIC21.28■■□□□ 1
LSM1O15116 ASB1-202ENST00000409297 878 ntTSL 5 BASIC21.28■■□□□ 1
LSM1O15116 HNRNPUL1-222ENST00000617774 451 ntTSL 5 BASIC21.28■■□□□ 1
LSM1O15116 LSM14B-201ENST00000279068 2548 ntAPPRIS P1 TSL 5 BASIC21.28■■□□□ 1
Retrieved 100 of 98,524 protein–RNA pairs in 32.6 ms