RNA–Protein interactions for RNA: ENST00000374879.4

TMEFF1-201, Transcript of transmembrane protein with EGF like and two follistatin like domains 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TMEFF1, Length 2,611 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEFF1-201ENST00000374879 NISCHQ9Y2I1 1504 aa40.24■■■■■ 4.03
TMEFF1-201ENST00000374879 HRCP23327 699 aa35.02■■■■□ 3.2
TMEFF1-201ENST00000374879 SHROOM4Q9ULL8 1493 aa34.35■■■■□ 3.09
TMEFF1-201ENST00000374879 PPARGC1BQ86YN6 1023 aaKnown RBP34.32■■■■□ 3.08
TMEFF1-201ENST00000374879 PELP1Q8IZL8 1130 aaKnown RBP34.21■■■■□ 3.07
TMEFF1-201ENST00000374879 CCDC180Q9P1Z9 1646 aa34.19■■■■□ 3.06
TMEFF1-201ENST00000374879 PCGF6Q9BYE7 350 aa34.14■■■■□ 3.06
TMEFF1-201ENST00000374879 ZCCHC6Q5VYS8 1495 aaKnown RBP34.05■■■■□ 3.04
TMEFF1-201ENST00000374879 SUPT5HO00267 1087 aaKnown RBP33.9■■■■□ 3.02
TMEFF1-201ENST00000374879 MYO15BQ96JP2 1530 aa33.83■■■■□ 3.01
TMEFF1-201ENST00000374879 CHIC1Q5VXU3 224 aa33.5■■■□□ 2.95
TMEFF1-201ENST00000374879 DCAF8L2P0C7V8 631 aa33.39■■■□□ 2.94
TMEFF1-201ENST00000374879 SCAF1Q9H7N4 1312 aaKnown RBP33.34■■■□□ 2.93
TMEFF1-201ENST00000374879 DCAF1Q9Y4B6 1507 aa33.14■■■□□ 2.9
TMEFF1-201ENST00000374879 MYT1Q01538 1121 aa32.95■■■□□ 2.86
TMEFF1-201ENST00000374879 TRIM26Q12899 539 aaPredicted RBP32.93■■■□□ 2.86
TMEFF1-201ENST00000374879 LOC105371045A0A1W2PR82 267 aa32.8■■■□□ 2.84
TMEFF1-201ENST00000374879 ZEB1P37275 1124 aaPredicted RBP32.74■■■□□ 2.83
TMEFF1-201ENST00000374879 ACIN1Q9UKV3 1341 aaKnown RBP32.39■■■□□ 2.78
TMEFF1-201ENST00000374879 NEUROD1Q13562 356 aa32.31■■■□□ 2.76
TMEFF1-201ENST00000374879 GTF3C3Q9Y5Q9 886 aa32.16■■■□□ 2.74
TMEFF1-201ENST00000374879 ABCC9O60706 1549 aa32.14■■■□□ 2.74
TMEFF1-201ENST00000374879 SCRIBQ14160 1630 aa32.07■■■□□ 2.72
TMEFF1-201ENST00000374879 CENPBP07199 599 aaPredicted RBP31.88■■■□□ 2.69
TMEFF1-201ENST00000374879 RSF1Q96T23 1441 aaPredicted RBP31.86■■■□□ 2.69
TMEFF1-201ENST00000374879 DIEXFQ68CQ4 756 aaKnown RBP31.65■■■□□ 2.66
TMEFF1-201ENST00000374879 NACADO15069 1562 aa31.62■■■□□ 2.65
TMEFF1-201ENST00000374879 RB1CC1Q8TDY2 1594 aa31.54■■■□□ 2.64
TMEFF1-201ENST00000374879 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP31.52■■■□□ 2.64
TMEFF1-201ENST00000374879 CCER1Q8TC90 406 aaPredicted RBP31.44■■■□□ 2.62
TMEFF1-201ENST00000374879 TRIM41Q8WV44 630 aa31.41■■■□□ 2.62
TMEFF1-201ENST00000374879 CECR2Q9BXF3 1484 aa31.39■■■□□ 2.62
TMEFF1-201ENST00000374879 FAM9AQ8IZU1 332 aaPredicted RBP31.35■■■□□ 2.61
TMEFF1-201ENST00000374879 MROH2BQ7Z745 1585 aa31.29■■■□□ 2.6
TMEFF1-201ENST00000374879 EHMT2Q96KQ7 1210 aa31.25■■■□□ 2.59
TMEFF1-201ENST00000374879 YTHDC1Q96MU7 727 aaKnown RBP31.18■■■□□ 2.58
TMEFF1-201ENST00000374879 WIZO95785 1651 aa31.13■■■□□ 2.57
TMEFF1-201ENST00000374879 TTBK1Q5TCY1 1321 aaPredicted RBP30.97■■■□□ 2.55
TMEFF1-201ENST00000374879 ZNF316A6NFI3 1004 aaPredicted RBP30.95■■■□□ 2.55
TMEFF1-201ENST00000374879 BAZ1AQ9NRL2 1556 aaPredicted RBP30.94■■■□□ 2.54
TMEFF1-201ENST00000374879 BCL11AQ9H165 835 aa30.89■■■□□ 2.53
TMEFF1-201ENST00000374879 MIER1Q8N108 512 aa30.84■■■□□ 2.53
TMEFF1-201ENST00000374879 ANP32EQ9BTT0 268 aa30.71■■■□□ 2.51
TMEFF1-201ENST00000374879 EIF4G1Q04637 1599 aaKnown RBP30.71■■■□□ 2.51
TMEFF1-201ENST00000374879 SMARCA4P51532 1647 aa30.64■■■□□ 2.5
TMEFF1-201ENST00000374879 TOP2AP11388 1531 aaKnown RBP30.64■■■□□ 2.49
TMEFF1-201ENST00000374879 UNC13AQ9UPW8 1703 aa30.63■■■□□ 2.49
TMEFF1-201ENST00000374879 SUPT16HQ9Y5B9 1047 aaKnown RBP30.52■■■□□ 2.48
TMEFF1-201ENST00000374879 CCDC88BA6NC98 1476 aa30.52■■■□□ 2.48
TMEFF1-201ENST00000374879 TSHZ2Q9NRE2 1034 aa30.5■■■□□ 2.47
TMEFF1-201ENST00000374879 SMARCA2P51531 1590 aa30.47■■■□□ 2.47
TMEFF1-201ENST00000374879 ABCC8Q09428 1581 aa30.45■■■□□ 2.47
TMEFF1-201ENST00000374879 CSRNP3Q8WYN3 585 aa30.42■■■□□ 2.46
TMEFF1-201ENST00000374879 CLSPNQ9HAW4 1339 aa30.36■■■□□ 2.45
TMEFF1-201ENST00000374879 PABPN1Q86U42 306 aaKnown RBP eCLIP30.29■■■□□ 2.44
TMEFF1-201ENST00000374879 WRNQ14191 1432 aaPredicted RBP eCLIP30.28■■■□□ 2.44
TMEFF1-201ENST00000374879 BICRAQ9NZM4 1560 aa30.24■■■□□ 2.43
TMEFF1-201ENST00000374879 SOGA1O94964 1423 aa30.17■■■□□ 2.42
TMEFF1-201ENST00000374879 CEP162Q5TB80 1403 aa30.06■■■□□ 2.4
TMEFF1-201ENST00000374879 PEG3Q9GZU2 1588 aa30.05■■■□□ 2.4
TMEFF1-201ENST00000374879 EEA1Q15075 1411 aa30.03■■■□□ 2.4
TMEFF1-201ENST00000374879 RUSC2Q8N2Y8 1516 aa30.02■■■□□ 2.4
TMEFF1-201ENST00000374879 TNIKQ9UKE5 1360 aa30.01■■■□□ 2.39
TMEFF1-201ENST00000374879 HNRNPUL2Q1KMD3 747 aaKnown RBP29.97■■■□□ 2.39
TMEFF1-201ENST00000374879 UBTFP17480 764 aaKnown RBP29.92■■■□□ 2.38
TMEFF1-201ENST00000374879 ATAD2BQ9ULI0 1458 aa29.85■■■□□ 2.37
TMEFF1-201ENST00000374879 GOLGA3Q08378 1498 aa29.83■■■□□ 2.37
TMEFF1-201ENST00000374879 BCANQ96GW7 911 aa29.82■■■□□ 2.36
TMEFF1-201ENST00000374879 PRKCSHP14314 528 aaPredicted RBP29.81■■■□□ 2.36
TMEFF1-201ENST00000374879 BAZ1BQ9UIG0 1483 aaKnown RBP29.79■■■□□ 2.36
TMEFF1-201ENST00000374879 SYNJ1O43426 1573 aa29.78■■■□□ 2.36
TMEFF1-201ENST00000374879 RBM19Q9Y4C8 960 aaKnown RBP29.75■■■□□ 2.35
TMEFF1-201ENST00000374879 CEP164Q9UPV0 1460 aa29.67■■■□□ 2.34
TMEFF1-201ENST00000374879 FKBP8Q14318 412 aa29.64■■■□□ 2.34
TMEFF1-201ENST00000374879 KIF21BO75037 1637 aa29.62■■■□□ 2.33
TMEFF1-201ENST00000374879 KCNH8Q96L42 1107 aa29.59■■■□□ 2.33
TMEFF1-201ENST00000374879 MSH5O43196 834 aa29.55■■■□□ 2.32
TMEFF1-201ENST00000374879 CLIP1P30622 1438 aa29.5■■■□□ 2.31
TMEFF1-201ENST00000374879 RAPGEF2Q9Y4G8 1499 aa29.44■■■□□ 2.3
TMEFF1-201ENST00000374879 TOP2BQ02880 1626 aa29.42■■■□□ 2.3
TMEFF1-201ENST00000374879 DHX57Q6P158 1386 aaKnown RBP29.41■■■□□ 2.3
TMEFF1-201ENST00000374879 ITGAEP38570 1179 aa29.39■■■□□ 2.3
TMEFF1-201ENST00000374879 VPS8Q8N3P4 1428 aa29.37■■■□□ 2.29
TMEFF1-201ENST00000374879 RANGAP1P46060 587 aaPredicted RBP29.31■■■□□ 2.28
TMEFF1-201ENST00000374879 NEFLP07196 543 aa29.31■■■□□ 2.28
TMEFF1-201ENST00000374879 BIVM-ERCC5R4GMW8 1640 aa29.31■■■□□ 2.28
TMEFF1-201ENST00000374879 APLP2Q06481 763 aa29.27■■■□□ 2.28
TMEFF1-201ENST00000374879 NCAPD3P42695 1498 aa29.26■■■□□ 2.27
TMEFF1-201ENST00000374879 HMGXB3Q12766 1538 aa29.26■■■□□ 2.27
TMEFF1-201ENST00000374879 FANCIQ9NVI1 1328 aa29.2■■■□□ 2.26
TMEFF1-201ENST00000374879 ERICH6Q7L0X2 663 aa29.19■■■□□ 2.26
TMEFF1-201ENST00000374879 PRXQ9BXM0 1461 aa29.14■■■□□ 2.26
TMEFF1-201ENST00000374879 ERICH3Q5RHP9 1530 aa29.14■■■□□ 2.26
TMEFF1-201ENST00000374879 CUX1P39880 1505 aa29.13■■■□□ 2.25
TMEFF1-201ENST00000374879 DEKP35659 375 aaKnown RBP29.08■■■□□ 2.25
TMEFF1-201ENST00000374879 TRIM52Q96A61 297 aa29.06■■■□□ 2.24
TMEFF1-201ENST00000374879 CFTRP13569 1480 aa29.05■■■□□ 2.24
TMEFF1-201ENST00000374879 DDX10Q13206 875 aaKnown RBP29.03■■■□□ 2.24
TMEFF1-201ENST00000374879 KIF27Q86VH2 1401 aa29.02■■■□□ 2.24
TMEFF1-201ENST00000374879 MYT1LQ9UL68 1186 aa29.02■■■□□ 2.24
Retrieved 100 of 20,778 RNA–protein pairs in 7.4 ms