RNA–Protein interactions for RNA: ENST00000245908.10

SH2D3A-201, Transcript of SH2 domain containing 3A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SH2D3A, Length 2,296 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SH2D3A-201ENST00000245908 NISCHQ9Y2I1 1504 aa45.47■■■■■ 4.87
SH2D3A-201ENST00000245908 CCDC180Q9P1Z9 1646 aa38.89■■■■□ 3.82
SH2D3A-201ENST00000245908 ZCCHC6Q5VYS8 1495 aaKnown RBP38.48■■■■□ 3.75
SH2D3A-201ENST00000245908 SHROOM4Q9ULL8 1493 aa38.32■■■■□ 3.72
SH2D3A-201ENST00000245908 SUPT5HO00267 1087 aaKnown RBP37.52■■■■□ 3.6
SH2D3A-201ENST00000245908 DCAF1Q9Y4B6 1507 aa37.48■■■■□ 3.59
SH2D3A-201ENST00000245908 DCAF8L2P0C7V8 631 aa37.28■■■■□ 3.56
SH2D3A-201ENST00000245908 CHIC1Q5VXU3 224 aa36.6■■■■□ 3.45
SH2D3A-201ENST00000245908 MYO15BQ96JP2 1530 aa36.46■■■■□ 3.43
SH2D3A-201ENST00000245908 ABCC9O60706 1549 aa36.31■■■■□ 3.4
SH2D3A-201ENST00000245908 SCRIBQ14160 1630 aa36.17■■■■□ 3.38
SH2D3A-201ENST00000245908 NACADO15069 1562 aa35.9■■■■□ 3.34
SH2D3A-201ENST00000245908 RSF1Q96T23 1441 aaPredicted RBP35.87■■■■□ 3.33
SH2D3A-201ENST00000245908 RB1CC1Q8TDY2 1594 aa35.56■■■■□ 3.28
SH2D3A-201ENST00000245908 LOC105371045A0A1W2PR82 267 aa35.35■■■■□ 3.25
SH2D3A-201ENST00000245908 CECR2Q9BXF3 1484 aa35.34■■■■□ 3.25
SH2D3A-201ENST00000245908 HRCP23327 699 aa35.29■■■■□ 3.24
SH2D3A-201ENST00000245908 MROH2BQ7Z745 1585 aa35.27■■■■□ 3.24
SH2D3A-201ENST00000245908 PCGF6Q9BYE7 350 aa35.2■■■■□ 3.23
SH2D3A-201ENST00000245908 WIZO95785 1651 aa35.09■■■■□ 3.21
SH2D3A-201ENST00000245908 TRIM41Q8WV44 630 aa35.07■■■■□ 3.21
SH2D3A-201ENST00000245908 BAZ1AQ9NRL2 1556 aaPredicted RBP34.98■■■■□ 3.19
SH2D3A-201ENST00000245908 UNC13AQ9UPW8 1703 aa34.79■■■■□ 3.16
SH2D3A-201ENST00000245908 TRIM26Q12899 539 aaPredicted RBP34.73■■■■□ 3.15
SH2D3A-201ENST00000245908 EIF4G1Q04637 1599 aaKnown RBP34.72■■■■□ 3.15
SH2D3A-201ENST00000245908 SMARCA4P51532 1647 aa34.68■■■■□ 3.14
SH2D3A-201ENST00000245908 TOP2AP11388 1531 aaKnown RBP34.64■■■■□ 3.14
SH2D3A-201ENST00000245908 FAM9AQ8IZU1 332 aaPredicted RBP34.61■■■■□ 3.13
SH2D3A-201ENST00000245908 SMARCA2P51531 1590 aa34.41■■■■□ 3.1
SH2D3A-201ENST00000245908 CCDC88BA6NC98 1476 aa34.38■■■■□ 3.09
SH2D3A-201ENST00000245908 PPARGC1BQ86YN6 1023 aaKnown RBP34.37■■■■□ 3.09
SH2D3A-201ENST00000245908 BICRAQ9NZM4 1560 aa34.32■■■■□ 3.08
SH2D3A-201ENST00000245908 ABCC8Q09428 1581 aa34.19■■■■□ 3.06
SH2D3A-201ENST00000245908 EHMT2Q96KQ7 1210 aa34.18■■■■□ 3.06
SH2D3A-201ENST00000245908 PEG3Q9GZU2 1588 aa34.12■■■■□ 3.05
SH2D3A-201ENST00000245908 PABPN1Q86U42 306 aaKnown RBP eCLIP34.05■■■■□ 3.04
SH2D3A-201ENST00000245908 ZEB1P37275 1124 aaPredicted RBP34■■■■□ 3.03
SH2D3A-201ENST00000245908 EEA1Q15075 1411 aa33.85■■■■□ 3.01
SH2D3A-201ENST00000245908 SOGA1O94964 1423 aa33.82■■■■□ 3
SH2D3A-201ENST00000245908 ATAD2BQ9ULI0 1458 aa33.75■■■□□ 2.99
SH2D3A-201ENST00000245908 WRNQ14191 1432 aaPredicted RBP eCLIP33.73■■■□□ 2.99
SH2D3A-201ENST00000245908 TNIKQ9UKE5 1360 aa33.7■■■□□ 2.98
SH2D3A-201ENST00000245908 CEP162Q5TB80 1403 aa33.68■■■□□ 2.98
SH2D3A-201ENST00000245908 RUSC2Q8N2Y8 1516 aa33.65■■■□□ 2.98
SH2D3A-201ENST00000245908 BAZ1BQ9UIG0 1483 aaKnown RBP33.64■■■□□ 2.98
SH2D3A-201ENST00000245908 CSRNP3Q8WYN3 585 aa33.64■■■□□ 2.98
SH2D3A-201ENST00000245908 SYNJ1O43426 1573 aa33.56■■■□□ 2.96
SH2D3A-201ENST00000245908 GOLGA3Q08378 1498 aa33.53■■■□□ 2.96
SH2D3A-201ENST00000245908 PELP1Q8IZL8 1130 aaKnown RBP33.46■■■□□ 2.95
SH2D3A-201ENST00000245908 KIF21BO75037 1637 aa33.41■■■□□ 2.94
SH2D3A-201ENST00000245908 UBTFP17480 764 aaKnown RBP33.38■■■□□ 2.93
SH2D3A-201ENST00000245908 CEP164Q9UPV0 1460 aa33.37■■■□□ 2.93
SH2D3A-201ENST00000245908 TOP2BQ02880 1626 aa33.24■■■□□ 2.91
SH2D3A-201ENST00000245908 HMGXB3Q12766 1538 aa33.23■■■□□ 2.91
SH2D3A-201ENST00000245908 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP33.22■■■□□ 2.91
SH2D3A-201ENST00000245908 BIVM-ERCC5R4GMW8 1640 aa33.17■■■□□ 2.9
SH2D3A-201ENST00000245908 CCER1Q8TC90 406 aaPredicted RBP33.17■■■□□ 2.9
SH2D3A-201ENST00000245908 NCAPD3P42695 1498 aa33.17■■■□□ 2.9
SH2D3A-201ENST00000245908 TTBK1Q5TCY1 1321 aaPredicted RBP33.1■■■□□ 2.89
SH2D3A-201ENST00000245908 CLIP1P30622 1438 aa33.08■■■□□ 2.89
SH2D3A-201ENST00000245908 RAPGEF2Q9Y4G8 1499 aa33.05■■■□□ 2.88
SH2D3A-201ENST00000245908 VPS8Q8N3P4 1428 aa32.98■■■□□ 2.87
SH2D3A-201ENST00000245908 ERICH3Q5RHP9 1530 aa32.9■■■□□ 2.86
SH2D3A-201ENST00000245908 CUX1P39880 1505 aa32.87■■■□□ 2.85
SH2D3A-201ENST00000245908 CFTRP13569 1480 aa32.85■■■□□ 2.85
SH2D3A-201ENST00000245908 PRXQ9BXM0 1461 aa32.84■■■□□ 2.85
SH2D3A-201ENST00000245908 PRDM2Q13029 1718 aa32.76■■■□□ 2.83
SH2D3A-201ENST00000245908 KIF27Q86VH2 1401 aa32.68■■■□□ 2.82
SH2D3A-201ENST00000245908 APLP2Q06481 763 aa32.66■■■□□ 2.82
SH2D3A-201ENST00000245908 SCAF1Q9H7N4 1312 aaKnown RBP32.62■■■□□ 2.81
SH2D3A-201ENST00000245908 ARAP1Q96P48 1450 aa32.61■■■□□ 2.81
SH2D3A-201ENST00000245908 RANGAP1P46060 587 aaPredicted RBP32.56■■■□□ 2.8
SH2D3A-201ENST00000245908 HNRNPUL2Q1KMD3 747 aaKnown RBP32.53■■■□□ 2.8
SH2D3A-201ENST00000245908 DIEXFQ68CQ4 756 aaKnown RBP32.48■■■□□ 2.79
SH2D3A-201ENST00000245908 CADPSQ9ULU8 1353 aa32.45■■■□□ 2.79
SH2D3A-201ENST00000245908 CUX2O14529 1486 aa32.34■■■□□ 2.77
SH2D3A-201ENST00000245908 ZNF316A6NFI3 1004 aaPredicted RBP32.34■■■□□ 2.77
SH2D3A-201ENST00000245908 ARHGAP35Q9NRY4 1499 aa32.34■■■□□ 2.77
SH2D3A-201ENST00000245908 CC2D2AQ9P2K1 1620 aa32.32■■■□□ 2.77
SH2D3A-201ENST00000245908 IGF1RP08069 1367 aa32.29■■■□□ 2.76
SH2D3A-201ENST00000245908 FGD5Q6ZNL6 1462 aa32.28■■■□□ 2.76
SH2D3A-201ENST00000245908 KANK4Q5T7N3 995 aaPredicted RBP32.25■■■□□ 2.75
SH2D3A-201ENST00000245908 RRBP1Q9P2E9 1410 aaKnown RBP32.22■■■□□ 2.75
SH2D3A-201ENST00000245908 MYT1Q01538 1121 aa32.2■■■□□ 2.74
SH2D3A-201ENST00000245908 ACIN1Q9UKV3 1341 aaKnown RBP32.16■■■□□ 2.74
SH2D3A-201ENST00000245908 CARMIL1Q5VZK9 1371 aa32.15■■■□□ 2.74
SH2D3A-201ENST00000245908 FANCD2Q9BXW9 1451 aa32.13■■■□□ 2.73
SH2D3A-201ENST00000245908 CLSPNQ9HAW4 1339 aa32.13■■■□□ 2.73
SH2D3A-201ENST00000245908 MAP3K1Q13233 1512 aa32.08■■■□□ 2.73
SH2D3A-201ENST00000245908 DHX57Q6P158 1386 aaKnown RBP32.07■■■□□ 2.72
SH2D3A-201ENST00000245908 DNMBPQ6XZF7 1577 aa32.07■■■□□ 2.72
SH2D3A-201ENST00000245908 NEUROD1Q13562 356 aa32.06■■■□□ 2.72
SH2D3A-201ENST00000245908 CENPBP07199 599 aaPredicted RBP32.02■■■□□ 2.72
SH2D3A-201ENST00000245908 TIAM1Q13009 1591 aa32.02■■■□□ 2.72
SH2D3A-201ENST00000245908 CCNB3Q8WWL7 1395 aa32.02■■■□□ 2.72
SH2D3A-201ENST00000245908 ABCA10Q8WWZ4 1543 aa31.97■■■□□ 2.71
SH2D3A-201ENST00000245908 TOPBP1Q92547 1522 aa31.95■■■□□ 2.71
SH2D3A-201ENST00000245908 POLA1P09884 1462 aaPredicted RBP31.92■■■□□ 2.7
SH2D3A-201ENST00000245908 RAD54L2Q9Y4B4 1467 aa31.89■■■□□ 2.7
SH2D3A-201ENST00000245908 FHAD1B1AJZ9 1412 aa31.88■■■□□ 2.69
Retrieved 100 of 20,778 RNA–protein pairs in 7.7 ms