Protein–RNA interactions for Protein: P06340

HLA-DOA, HLA class II histocompatibility antigen, DO alpha chain, humanhuman

Predictions only

Length 250 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DOAP06340 AC005775.1-201ENST00000592413 850 ntTSL 5 BASIC26.36■■□□□ 1.81
HLA-DOAP06340 IRF3-207ENST00000593922 1494 ntTSL 1 (best) BASIC26.36■■□□□ 1.81
HLA-DOAP06340 KCNIP1-203ENST00000390656 2249 ntTSL 5 BASIC26.35■■□□□ 1.81
HLA-DOAP06340 POLD2-207ENST00000452185 1659 ntAPPRIS P1 TSL 1 (best) BASIC26.35■■□□□ 1.81
HLA-DOAP06340 GFRA3-202ENST00000378362 1837 ntAPPRIS ALT2 TSL 1 (best) BASIC26.35■■□□□ 1.81
HLA-DOAP06340 KLC3-202ENST00000470402 1820 ntTSL 1 (best) BASIC26.35■■□□□ 1.81
HLA-DOAP06340 AC079630.1-202ENST00000618127 1840 ntBASIC26.35■■□□□ 1.81
HLA-DOAP06340 RAB40B-201ENST00000269347 2189 ntTSL 2 BASIC26.35■■□□□ 1.81
HLA-DOAP06340 ITM2C-203ENST00000335005 1889 ntTSL 1 (best) BASIC26.35■■□□□ 1.81
HLA-DOAP06340 PRDX4-202ENST00000379341 1005 ntAPPRIS P1 TSL 1 (best) BASIC26.35■■□□□ 1.81
HLA-DOAP06340 ZFYVE28-207ENST00000509171 1135 ntTSL 2 BASIC26.35■■□□□ 1.81
HLA-DOAP06340 AL358852.1-201ENST00000623174 1268 ntBASIC26.35■■□□□ 1.81
HLA-DOAP06340 SLCO3A1-201ENST00000318445 5115 ntAPPRIS P1 TSL 1 (best) BASIC26.35■■□□□ 1.81
HLA-DOAP06340 POMZP3-202ENST00000310842 1490 ntAPPRIS P1 TSL 1 (best) BASIC26.35■■□□□ 1.81
HLA-DOAP06340 TRAF4-205ENST00000444415 1456 ntTSL 5 BASIC26.35■■□□□ 1.81
HLA-DOAP06340 RHBDL3-204ENST00000538145 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC26.35■■□□□ 1.81
HLA-DOAP06340 STK19-201ENST00000375331 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC26.34■■□□□ 1.81
HLA-DOAP06340 ANKRD53-204ENST00000457410 1671 ntTSL 5 BASIC26.34■■□□□ 1.81
HLA-DOAP06340 AP002761.3-201ENST00000546324 1695 ntTSL 2 BASIC26.34■■□□□ 1.81
HLA-DOAP06340 CYP2A13-201ENST00000330436 1739 ntAPPRIS P1 TSL 1 (best) BASIC26.34■■□□□ 1.81
HLA-DOAP06340 SCAND1-202ENST00000373991 1727 ntAPPRIS P1 TSL 1 (best) BASIC26.34■■□□□ 1.81
HLA-DOAP06340 FOXP4-203ENST00000373060 5948 ntTSL 5 BASIC26.33■■□□□ 1.81
HLA-DOAP06340 FOXP4-204ENST00000373063 5910 ntTSL 1 (best) BASIC26.33■■□□□ 1.81
HLA-DOAP06340 NMRAL1-202ENST00000404295 1233 ntAPPRIS P1 TSL 1 (best) BASIC26.33■■□□□ 1.81
HLA-DOAP06340 HES6-202ENST00000409002 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC26.33■■□□□ 1.81
HLA-DOAP06340 AL162430.1-201ENST00000480705 870 ntBASIC26.33■■□□□ 1.81
HLA-DOAP06340 AP005435.1-201ENST00000529293 1178 ntBASIC26.33■■□□□ 1.81
HLA-DOAP06340 SLC12A5-217ENST00000626937 1224 ntTSL 1 (best) BASIC26.33■■□□□ 1.81
HLA-DOAP06340 HEXDC-202ENST00000337014 2285 ntTSL 1 (best) BASIC26.33■■□□□ 1.81
HLA-DOAP06340 MMP21-201ENST00000368808 1919 ntAPPRIS P1 TSL 1 (best) BASIC26.33■■□□□ 1.81
HLA-DOAP06340 MAZ-202ENST00000322945 2532 ntAPPRIS ALT2 TSL 1 (best) BASIC26.32■■□□□ 1.8
HLA-DOAP06340 IQCJ-SCHIP1-202ENST00000460298 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC26.32■■□□□ 1.8
HLA-DOAP06340 PDIA2-201ENST00000219406 1698 ntAPPRIS P2 TSL 1 (best) BASIC26.32■■□□□ 1.8
HLA-DOAP06340 PACRGL-201ENST00000295290 1937 ntTSL 5 BASIC26.32■■□□□ 1.8
HLA-DOAP06340 ABCB10P4-201ENST00000566803 2184 ntBASIC26.32■■□□□ 1.8
HLA-DOAP06340 YBX1P1-201ENST00000445822 960 ntBASIC26.32■■□□□ 1.8
HLA-DOAP06340 BCAP29-209ENST00000465919 942 ntTSL 2 BASIC26.32■■□□□ 1.8
HLA-DOAP06340 LSM8-203ENST00000422760 1920 ntTSL 1 (best) BASIC26.31■■□□□ 1.8
HLA-DOAP06340 MAP3K5-201ENST00000359015 5197 ntAPPRIS P1 TSL 1 (best) BASIC26.31■■□□□ 1.8
HLA-DOAP06340 NELFB-201ENST00000343053 2698 ntAPPRIS ALT2 TSL 1 (best) BASIC26.31■■□□□ 1.8
HLA-DOAP06340 STOML2-202ENST00000452248 1296 ntTSL 2 BASIC26.31■■□□□ 1.8
HLA-DOAP06340 TUNAR-203ENST00000554321 767 ntAPPRIS P1 TSL 4 BASIC26.31■■□□□ 1.8
HLA-DOAP06340 GALNS-211ENST00000568311 703 ntTSL 1 (best) BASIC26.31■■□□□ 1.8
HLA-DOAP06340 STOML2-205ENST00000619795 1293 ntTSL 3 BASIC26.31■■□□□ 1.8
HLA-DOAP06340 STK19-202ENST00000375333 1557 ntAPPRIS P3 TSL 1 (best) BASIC26.31■■□□□ 1.8
HLA-DOAP06340 FAM102B-202ENST00000405454 1585 ntAPPRIS ALT2 TSL 5 BASIC26.31■■□□□ 1.8
HLA-DOAP06340 C1QL2-201ENST00000272520 2043 ntAPPRIS P1 TSL 1 (best) BASIC26.31■■□□□ 1.8
HLA-DOAP06340 HMGA2-205ENST00000425208 1444 ntTSL 1 (best) BASIC26.31■■□□□ 1.8
HLA-DOAP06340 CDX1-201ENST00000231656 1758 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
HLA-DOAP06340 XBP1-207ENST00000611155 1794 ntTSL 5 BASIC26.3■■□□□ 1.8
HLA-DOAP06340 STX4-202ENST00000394998 1498 ntTSL 2 BASIC26.3■■□□□ 1.8
HLA-DOAP06340 TCP1-202ENST00000392168 1878 ntTSL 5 BASIC26.3■■□□□ 1.8
HLA-DOAP06340 AC012414.1-201ENST00000556676 535 ntBASIC26.3■■□□□ 1.8
HLA-DOAP06340 AL354811.1-201ENST00000610286 706 ntBASIC26.3■■□□□ 1.8
HLA-DOAP06340 CT47B1-201ENST00000371311 1328 ntAPPRIS P1 TSL 5 BASIC26.3■■□□□ 1.8
HLA-DOAP06340 EXOG-203ENST00000422077 1317 ntTSL 2 BASIC26.3■■□□□ 1.8
HLA-DOAP06340 NPAS1-208ENST00000602212 2117 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
HLA-DOAP06340 TMEM266-201ENST00000388942 2520 ntAPPRIS P1 TSL 5 BASIC26.3■■□□□ 1.8
HLA-DOAP06340 C7orf26-202ENST00000359073 1762 ntTSL 1 (best) BASIC26.3■■□□□ 1.8
HLA-DOAP06340 MEIS3-201ENST00000331559 2104 ntAPPRIS ALT2 TSL 5 BASIC26.29■■□□□ 1.8
HLA-DOAP06340 NINJ1-201ENST00000375446 1281 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
HLA-DOAP06340 GDNF-203ENST00000381826 778 ntTSL 1 (best) BASIC26.29■■□□□ 1.8
HLA-DOAP06340 GDNF-204ENST00000427982 856 ntTSL 1 (best) BASIC26.29■■□□□ 1.8
HLA-DOAP06340 NEBL-AS1-202ENST00000439097 661 ntTSL 2 BASIC26.29■■□□□ 1.8
HLA-DOAP06340 CDIPT-210ENST00000570016 1346 ntAPPRIS P1 TSL 5 BASIC26.29■■□□□ 1.8
HLA-DOAP06340 ERI3-201ENST00000372257 1684 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
HLA-DOAP06340 RTCA-202ENST00000370126 538 ntTSL 1 (best) BASIC26.28■■□□□ 1.8
HLA-DOAP06340 PRMT2-204ENST00000397628 954 ntTSL 2 BASIC26.28■■□□□ 1.8
HLA-DOAP06340 AC027612.3-201ENST00000413684 1047 ntBASIC26.28■■□□□ 1.8
HLA-DOAP06340 PYCARD-AS1-201ENST00000561916 1095 ntTSL 2 BASIC26.28■■□□□ 1.8
HLA-DOAP06340 BLOC1S4-201ENST00000320776 1617 ntAPPRIS P1 BASIC26.28■■□□□ 1.8
HLA-DOAP06340 POU2F3-206ENST00000543440 1953 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
HLA-DOAP06340 ZC3H14-219ENST00000556945 2075 ntTSL 5 BASIC26.27■■□□□ 1.8
HLA-DOAP06340 INS-202ENST00000381330 597 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
HLA-DOAP06340 JARID2-AS1-201ENST00000441978 455 ntTSL 1 (best) BASIC26.27■■□□□ 1.8
HLA-DOAP06340 OTUB1-212ENST00000543988 1259 ntTSL 1 (best) BASIC26.27■■□□□ 1.8
HLA-DOAP06340 MIR6084-201ENST00000622012 110 ntBASIC26.27■■□□□ 1.8
HLA-DOAP06340 FAM110A-206ENST00000541082 1614 ntAPPRIS P1 TSL 3 BASIC26.27■■□□□ 1.8
HLA-DOAP06340 TMED4-205ENST00000481238 1755 ntTSL 1 (best) BASIC26.27■■□□□ 1.8
HLA-DOAP06340 BCL2L12-212ENST00000616144 1854 ntAPPRIS P3 TSL 1 (best) BASIC26.27■■□□□ 1.8
HLA-DOAP06340 NAGS-201ENST00000293404 2182 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
HLA-DOAP06340 MRPL37-202ENST00000360840 1483 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
HLA-DOAP06340 YIF1B-202ENST00000337679 1257 ntTSL 1 (best) BASIC26.26■■□□□ 1.79
HLA-DOAP06340 MRPL14-201ENST00000372014 959 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
HLA-DOAP06340 CKLF-205ENST00000417030 628 ntAPPRIS ALT2 TSL 4 BASIC26.26■■□□□ 1.79
HLA-DOAP06340 AC034268.1-201ENST00000441047 882 ntBASIC26.26■■□□□ 1.79
HLA-DOAP06340 SLC25A29-201ENST00000359232 2385 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
HLA-DOAP06340 DHH-201ENST00000266991 1936 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
HLA-DOAP06340 HSD11B2-201ENST00000326152 1900 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
HLA-DOAP06340 AC096541.1-201ENST00000445070 1807 ntTSL 2 BASIC26.25■■□□□ 1.79
HLA-DOAP06340 UBALD1-208ENST00000591401 1305 ntTSL 5 BASIC26.25■■□□□ 1.79
HLA-DOAP06340 ASPDH-202ENST00000389208 1040 ntAPPRIS P1 TSL 5 BASIC26.25■■□□□ 1.79
HLA-DOAP06340 LHPP-203ENST00000392757 840 ntTSL 3 BASIC26.25■■□□□ 1.79
HLA-DOAP06340 POLR2H-204ENST00000438240 994 ntTSL 3 BASIC26.25■■□□□ 1.79
HLA-DOAP06340 FRMD8-208ENST00000531296 366 ntTSL 1 (best) BASIC26.25■■□□□ 1.79
HLA-DOAP06340 LGALS9B-202ENST00000423676 1713 ntAPPRIS ALT2 TSL 1 (best) BASIC26.25■■□□□ 1.79
HLA-DOAP06340 TMEM230-205ENST00000379279 1636 ntAPPRIS P1 TSL 2 BASIC26.25■■□□□ 1.79
HLA-DOAP06340 KDELR1-203ENST00000597017 1594 ntTSL 2 BASIC26.24■■□□□ 1.79
HLA-DOAP06340 H1FX-201ENST00000333762 1507 ntAPPRIS P1 BASIC26.24■■□□□ 1.79
HLA-DOAP06340 AL353803.4-201ENST00000565882 1934 ntBASIC26.24■■□□□ 1.79
Retrieved 100 of 98,524 protein–RNA pairs in 70.8 ms