RNA–Protein interactions for RNA: ENST00000231656.12

CDX1-201, Transcript of caudal type homeobox 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CDX1, Length 1,758 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1-201ENST00000231656 NISCHQ9Y2I1 1504 aa51.79■■■■■ 5.88
CDX1-201ENST00000231656 CCDC180Q9P1Z9 1646 aa45.41■■■■■ 4.86
CDX1-201ENST00000231656 ZCCHC6Q5VYS8 1495 aaKnown RBP43.41■■■■■ 4.54
CDX1-201ENST00000231656 ABCC9O60706 1549 aa43.32■■■■■ 4.53
CDX1-201ENST00000231656 DCAF8L2P0C7V8 631 aa42.87■■■■■ 4.45
CDX1-201ENST00000231656 DCAF1Q9Y4B6 1507 aa42.84■■■■■ 4.45
CDX1-201ENST00000231656 MYO15BQ96JP2 1530 aa42.51■■■■■ 4.4
CDX1-201ENST00000231656 NACADO15069 1562 aa42.4■■■■■ 4.38
CDX1-201ENST00000231656 RB1CC1Q8TDY2 1594 aa42.15■■■■■ 4.34
CDX1-201ENST00000231656 SHROOM4Q9ULL8 1493 aa41.85■■■■■ 4.29
CDX1-201ENST00000231656 SCRIBQ14160 1630 aa41.65■■■■■ 4.26
CDX1-201ENST00000231656 UNC13AQ9UPW8 1703 aa41.32■■■■■ 4.2
CDX1-201ENST00000231656 BICRAQ9NZM4 1560 aa40.88■■■■■ 4.14
CDX1-201ENST00000231656 PABPN1Q86U42 306 aaKnown RBP eCLIP40.74■■■■■ 4.11
CDX1-201ENST00000231656 CECR2Q9BXF3 1484 aa40.27■■■■■ 4.04
CDX1-201ENST00000231656 SUPT5HO00267 1087 aaKnown RBP40.03■■■■■ 4
CDX1-201ENST00000231656 BAZ1AQ9NRL2 1556 aaPredicted RBP40.03■■■■■ 4
CDX1-201ENST00000231656 MROH2BQ7Z745 1585 aa39.98■■■■□ 3.99
CDX1-201ENST00000231656 RSF1Q96T23 1441 aaPredicted RBP39.98■■■■□ 3.99
CDX1-201ENST00000231656 SMARCA4P51532 1647 aa39.92■■■■□ 3.98
CDX1-201ENST00000231656 EIF4G1Q04637 1599 aaKnown RBP39.69■■■■□ 3.94
CDX1-201ENST00000231656 WIZO95785 1651 aa39.64■■■■□ 3.94
CDX1-201ENST00000231656 PEG3Q9GZU2 1588 aa39.47■■■■□ 3.91
CDX1-201ENST00000231656 ATAD2BQ9ULI0 1458 aa39.37■■■■□ 3.89
CDX1-201ENST00000231656 SMARCA2P51531 1590 aa39.35■■■■□ 3.89
CDX1-201ENST00000231656 CC2D2AQ9P2K1 1620 aa39.23■■■■□ 3.87
CDX1-201ENST00000231656 TOP2AP11388 1531 aaKnown RBP39.22■■■■□ 3.87
CDX1-201ENST00000231656 NCAPD3P42695 1498 aa39.12■■■■□ 3.85
CDX1-201ENST00000231656 BAZ1BQ9UIG0 1483 aaKnown RBP39.11■■■■□ 3.85
CDX1-201ENST00000231656 HMGXB3Q12766 1538 aa39.04■■■■□ 3.84
CDX1-201ENST00000231656 CCDC88BA6NC98 1476 aa38.8■■■■□ 3.8
CDX1-201ENST00000231656 DNAJC5BQ9UF47 199 aa38.64■■■■□ 3.78
CDX1-201ENST00000231656 CHIC1Q5VXU3 224 aa38.37■■■■□ 3.73
CDX1-201ENST00000231656 CFTRP13569 1480 aa38.12■■■■□ 3.69
CDX1-201ENST00000231656 CADPSQ9ULU8 1353 aa38.07■■■■□ 3.69
CDX1-201ENST00000231656 PRDM2Q13029 1718 aa37.95■■■■□ 3.66
CDX1-201ENST00000231656 NESP48681 1621 aa37.89■■■■□ 3.66
CDX1-201ENST00000231656 LAMC3Q9Y6N6 1575 aa37.88■■■■□ 3.66
CDX1-201ENST00000231656 ABCC8Q09428 1581 aa37.83■■■■□ 3.65
CDX1-201ENST00000231656 TRIM41Q8WV44 630 aa37.69■■■■□ 3.62
CDX1-201ENST00000231656 FANCD2Q9BXW9 1451 aa37.66■■■■□ 3.62
CDX1-201ENST00000231656 WRNQ14191 1432 aaPredicted RBP eCLIP37.64■■■■□ 3.62
CDX1-201ENST00000231656 PDS5BQ9NTI5 1447 aa37.59■■■■□ 3.61
CDX1-201ENST00000231656 SYNJ1O43426 1573 aa37.51■■■■□ 3.6
CDX1-201ENST00000231656 CEP164Q9UPV0 1460 aa37.47■■■■□ 3.59
CDX1-201ENST00000231656 KIF21AQ7Z4S6 1674 aa37.46■■■■□ 3.59
CDX1-201ENST00000231656 CUX1P39880 1505 aa37.42■■■■□ 3.58
CDX1-201ENST00000231656 TOP2BQ02880 1626 aa37.42■■■■□ 3.58
CDX1-201ENST00000231656 BIVM-ERCC5R4GMW8 1640 aa37.39■■■■□ 3.58
CDX1-201ENST00000231656 DNMBPQ6XZF7 1577 aa37.24■■■■□ 3.55
CDX1-201ENST00000231656 URB2Q14146 1524 aaKnown RBP37.21■■■■□ 3.55
CDX1-201ENST00000231656 TOPBP1Q92547 1522 aa37.2■■■■□ 3.55
CDX1-201ENST00000231656 ERCC6Q03468 1493 aa37.19■■■■□ 3.54
CDX1-201ENST00000231656 MRC2Q9UBG0 1479 aa37.12■■■■□ 3.53
CDX1-201ENST00000231656 FGD5Q6ZNL6 1462 aa37.08■■■■□ 3.53
CDX1-201ENST00000231656 SOGA1O94964 1423 aa37.01■■■■□ 3.51
CDX1-201ENST00000231656 POLA1P09884 1462 aaPredicted RBP36.98■■■■□ 3.51
CDX1-201ENST00000231656 THOC2Q8NI27 1593 aaKnown RBP36.97■■■■□ 3.51
CDX1-201ENST00000231656 WDR62O43379 1518 aa36.96■■■■□ 3.51
CDX1-201ENST00000231656 FAM9AQ8IZU1 332 aaPredicted RBP36.96■■■■□ 3.51
CDX1-201ENST00000231656 LOC105371045A0A1W2PR82 267 aa36.94■■■■□ 3.5
CDX1-201ENST00000231656 RUSC2Q8N2Y8 1516 aa36.9■■■■□ 3.5
CDX1-201ENST00000231656 EEA1Q15075 1411 aa36.85■■■■□ 3.49
CDX1-201ENST00000231656 RAD54L2Q9Y4B4 1467 aa36.84■■■■□ 3.49
CDX1-201ENST00000231656 ABCA10Q8WWZ4 1543 aa36.75■■■■□ 3.47
CDX1-201ENST00000231656 CUX2O14529 1486 aa36.74■■■■□ 3.47
CDX1-201ENST00000231656 KIF27Q86VH2 1401 aa36.72■■■■□ 3.47
CDX1-201ENST00000231656 WDR97A6NE52 1622 aa36.7■■■■□ 3.47
CDX1-201ENST00000231656 TARBP1Q13395 1621 aaKnown RBP36.7■■■■□ 3.47
CDX1-201ENST00000231656 CSRNP3Q8WYN3 585 aa36.68■■■■□ 3.46
CDX1-201ENST00000231656 IFT140Q96RY7 1462 aa36.6■■■■□ 3.45
CDX1-201ENST00000231656 TDRD9Q8NDG6 1382 aaKnown RBP36.52■■■■□ 3.44
CDX1-201ENST00000231656 ABCA5Q8WWZ7 1642 aa36.5■■■■□ 3.43
CDX1-201ENST00000231656 IGF1RP08069 1367 aa36.46■■■■□ 3.43
CDX1-201ENST00000231656 EHMT2Q96KQ7 1210 aa36.44■■■■□ 3.42
CDX1-201ENST00000231656 GAPVD1Q14C86 1478 aa36.44■■■■□ 3.42
CDX1-201ENST00000231656 KIF21BO75037 1637 aa36.41■■■■□ 3.42
CDX1-201ENST00000231656 ZNF608Q9ULD9 1512 aaPredicted RBP36.41■■■■□ 3.42
CDX1-201ENST00000231656 AQRO60306 1485 aaKnown RBP eCLIP36.38■■■■□ 3.41
CDX1-201ENST00000231656 PRXQ9BXM0 1461 aa36.37■■■■□ 3.41
CDX1-201ENST00000231656 ERICH3Q5RHP9 1530 aa36.32■■■■□ 3.41
CDX1-201ENST00000231656 GOLGA3Q08378 1498 aa36.31■■■■□ 3.4
CDX1-201ENST00000231656 EIF4G3O43432 1585 aaKnown RBP36.3■■■■□ 3.4
CDX1-201ENST00000231656 PBRM1Q86U86 1689 aa36.29■■■■□ 3.4
CDX1-201ENST00000231656 RAPGEF2Q9Y4G8 1499 aa36.28■■■■□ 3.4
CDX1-201ENST00000231656 CARMIL1Q5VZK9 1371 aa36.25■■■■□ 3.39
CDX1-201ENST00000231656 CUL7Q14999 1698 aa36.25■■■■□ 3.39
CDX1-201ENST00000231656 GRIN2BQ13224 1484 aa36.22■■■■□ 3.39
CDX1-201ENST00000231656 UBTFP17480 764 aaKnown RBP36.16■■■■□ 3.38
CDX1-201ENST00000231656 TNIKQ9UKE5 1360 aa36.1■■■■□ 3.37
CDX1-201ENST00000231656 ADAMTS12P58397 1594 aa36.06■■■■□ 3.36
CDX1-201ENST00000231656 SNAPC4Q5SXM2 1469 aa36.04■■■■□ 3.36
CDX1-201ENST00000231656 FHAD1B1AJZ9 1412 aa36.03■■■■□ 3.36
CDX1-201ENST00000231656 MAGI1Q96QZ7 1491 aaPredicted RBP35.98■■■■□ 3.35
CDX1-201ENST00000231656 CEP162Q5TB80 1403 aa35.88■■■■□ 3.33
CDX1-201ENST00000231656 SYNJ2O15056 1496 aa35.85■■■■□ 3.33
CDX1-201ENST00000231656 GRIN2AQ12879 1464 aa35.79■■■■□ 3.32
CDX1-201ENST00000231656 CTTNBP2Q8WZ74 1663 aa35.79■■■■□ 3.32
CDX1-201ENST00000231656 CHMP7Q8WUX9 453 aaPredicted RBP35.76■■■■□ 3.32
CDX1-201ENST00000231656 PCGF6Q9BYE7 350 aa35.74■■■■□ 3.31
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms