Protein–RNA interactions for Protein: Q9BWF2

TRAIP, E3 ubiquitin-protein ligase TRAIP, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAIPQ9BWF2 GNB5-202ENST00000358784 1735 ntAPPRIS ALT1 TSL 1 (best) BASIC30.6■■■□□ 2.49
TRAIPQ9BWF2 FEZF2-201ENST00000283268 2074 ntAPPRIS P1 TSL 1 (best) BASIC30.58■■■□□ 2.49
TRAIPQ9BWF2 FTCDNL1-201ENST00000416668 944 ntTSL 1 (best) BASIC30.55■■■□□ 2.48
TRAIPQ9BWF2 ADRA2C-201ENST00000330055 2129 ntAPPRIS P1 BASIC30.55■■■□□ 2.48
TRAIPQ9BWF2 LGALS3-201ENST00000254301 1146 ntAPPRIS P1 TSL 1 (best) BASIC30.54■■■□□ 2.48
TRAIPQ9BWF2 AUTS2-202ENST00000403018 957 ntTSL 1 (best) BASIC30.53■■■□□ 2.48
TRAIPQ9BWF2 KCTD17-209ENST00000610767 1502 ntAPPRIS ALT2 TSL 3 BASIC30.52■■■□□ 2.48
TRAIPQ9BWF2 AC092755.2-201ENST00000560199 402 ntTSL 3 BASIC30.52■■■□□ 2.48
TRAIPQ9BWF2 GRK2-204ENST00000526285 1458 ntTSL 5 BASIC30.5■■■□□ 2.47
TRAIPQ9BWF2 CDKN2D-202ENST00000393599 1422 ntAPPRIS P1 TSL 1 (best) BASIC30.5■■■□□ 2.47
TRAIPQ9BWF2 AKR1E2-201ENST00000298375 1566 ntAPPRIS P1 TSL 1 (best) BASIC30.49■■■□□ 2.47
TRAIPQ9BWF2 LMO1-202ENST00000428101 1038 ntAPPRIS ALT1 TSL 1 (best) BASIC30.48■■■□□ 2.47
TRAIPQ9BWF2 AL133380.1-201ENST00000506013 324 ntBASIC30.47■■■□□ 2.47
TRAIPQ9BWF2 CAHM-201ENST00000604200 896 ntBASIC30.47■■■□□ 2.47
TRAIPQ9BWF2 TP53I13-201ENST00000301057 1530 ntAPPRIS P2 TSL 1 (best) BASIC30.47■■■□□ 2.47
TRAIPQ9BWF2 ANKS1B-202ENST00000333732 1675 ntTSL 2 BASIC30.46■■■□□ 2.47
TRAIPQ9BWF2 NFKBIA-209ENST00000557389 1537 ntTSL 2 BASIC30.44■■■□□ 2.46
TRAIPQ9BWF2 AC006486.1-201ENST00000594664 634 ntAPPRIS P1 TSL 3 BASIC30.44■■■□□ 2.46
TRAIPQ9BWF2 MACROD1-201ENST00000255681 1205 ntAPPRIS P1 TSL 1 (best) BASIC30.43■■■□□ 2.46
TRAIPQ9BWF2 PCBD2-201ENST00000254908 1223 ntAPPRIS P1 TSL 1 (best) BASIC30.42■■■□□ 2.46
TRAIPQ9BWF2 NMB-201ENST00000360476 1007 ntAPPRIS P1 TSL 1 (best) BASIC30.41■■■□□ 2.46
TRAIPQ9BWF2 GRASP-206ENST00000552049 1688 ntTSL 1 (best) BASIC30.41■■■□□ 2.46
TRAIPQ9BWF2 ADRA1D-201ENST00000379453 2728 ntAPPRIS P1 TSL 1 (best) BASIC30.4■■■□□ 2.46
TRAIPQ9BWF2 AL109917.1-201ENST00000412228 906 ntTSL 2 BASIC30.4■■■□□ 2.46
TRAIPQ9BWF2 CMAS-201ENST00000229329 1787 ntAPPRIS P1 TSL 1 (best) BASIC30.4■■■□□ 2.46
TRAIPQ9BWF2 ANXA5-201ENST00000296511 1762 ntAPPRIS P1 TSL 1 (best) BASIC30.39■■■□□ 2.46
TRAIPQ9BWF2 FGF3-201ENST00000334134 892 ntAPPRIS P1 TSL 1 (best) BASIC30.39■■■□□ 2.46
TRAIPQ9BWF2 IFNGR2-201ENST00000290219 2221 ntAPPRIS P3 TSL 1 (best) BASIC30.39■■■□□ 2.46
TRAIPQ9BWF2 PARD6A-202ENST00000458121 1260 ntAPPRIS ALT1 TSL 1 (best) BASIC30.37■■■□□ 2.45
TRAIPQ9BWF2 SULT4A1-201ENST00000330884 2468 ntAPPRIS P1 TSL 1 (best) BASIC30.36■■■□□ 2.45
TRAIPQ9BWF2 AL391121.1-201ENST00000607967 1349 ntBASIC30.36■■■□□ 2.45
TRAIPQ9BWF2 S100A10-202ENST00000368811 1202 ntAPPRIS P1 TSL 1 (best) BASIC30.35■■■□□ 2.45
TRAIPQ9BWF2 GIPC1-201ENST00000345425 1782 ntAPPRIS P1 TSL 1 (best) BASIC30.34■■■□□ 2.45
TRAIPQ9BWF2 GSC2-201ENST00000086933 1033 ntAPPRIS P1 TSL 5 BASIC30.34■■■□□ 2.45
TRAIPQ9BWF2 CSNK1E-205ENST00000405675 2127 ntTSL 5 BASIC30.34■■■□□ 2.45
TRAIPQ9BWF2 MPST-201ENST00000341116 1504 ntAPPRIS P1 TSL 5 BASIC30.33■■■□□ 2.45
TRAIPQ9BWF2 PSMG4-205ENST00000419065 629 ntTSL 2 BASIC30.32■■■□□ 2.44
TRAIPQ9BWF2 CHCHD4-201ENST00000295767 1603 ntTSL 2 BASIC30.31■■■□□ 2.44
TRAIPQ9BWF2 CGGBP1-206ENST00000482016 1147 ntAPPRIS P1 TSL 2 BASIC30.3■■■□□ 2.44
TRAIPQ9BWF2 DUSP15-202ENST00000339738 1454 ntAPPRIS P1 TSL 1 (best) BASIC30.29■■■□□ 2.44
TRAIPQ9BWF2 FAAP20-204ENST00000400919 1413 ntTSL 3 BASIC30.29■■■□□ 2.44
TRAIPQ9BWF2 LYNX1-208ENST00000615007 1293 ntAPPRIS P1 TSL 1 (best) BASIC30.26■■■□□ 2.43
TRAIPQ9BWF2 MAPK4-202ENST00000540640 1576 ntTSL 2 BASIC30.22■■■□□ 2.43
TRAIPQ9BWF2 SLC22A23-201ENST00000380298 1574 ntTSL 1 (best) BASIC30.21■■■□□ 2.43
TRAIPQ9BWF2 AC243773.2-204ENST00000621428 1462 ntTSL 1 (best) BASIC30.2■■■□□ 2.43
TRAIPQ9BWF2 C1orf122-204ENST00000468084 1234 ntAPPRIS ALT2 TSL 2 BASIC30.2■■■□□ 2.43
TRAIPQ9BWF2 SIGMAR1-205ENST00000477726 840 ntTSL 1 (best) BASIC30.2■■■□□ 2.43
TRAIPQ9BWF2 RPS2P35-201ENST00000443417 897 ntBASIC30.17■■■□□ 2.42
TRAIPQ9BWF2 CCNYL1-205ENST00000420822 952 ntTSL 1 (best) BASIC30.14■■■□□ 2.42
TRAIPQ9BWF2 EBPL-202ENST00000378268 680 ntTSL 3 BASIC30.13■■■□□ 2.41
TRAIPQ9BWF2 AP006261.1-201ENST00000584783 668 ntBASIC30.13■■■□□ 2.41
TRAIPQ9BWF2 SERINC2-201ENST00000373709 1997 ntAPPRIS P1 TSL 1 (best) BASIC30.12■■■□□ 2.41
TRAIPQ9BWF2 CTDNEP1-210ENST00000574322 1708 ntAPPRIS P1 TSL 1 (best) BASIC30.12■■■□□ 2.41
TRAIPQ9BWF2 NRG1-221ENST00000614767 762 ntTSL 5 BASIC30.08■■■□□ 2.41
TRAIPQ9BWF2 TUBB6-201ENST00000317702 2064 ntAPPRIS P1 TSL 1 (best) BASIC30.08■■■□□ 2.41
TRAIPQ9BWF2 HNRNPLP2-201ENST00000568980 1570 ntBASIC30.07■■■□□ 2.4
TRAIPQ9BWF2 RHOC-208ENST00000369642 1355 ntAPPRIS P1 TSL 1 (best) BASIC30.05■■■□□ 2.4
TRAIPQ9BWF2 AL162393.1-201ENST00000437852 946 ntBASIC30.05■■■□□ 2.4
TRAIPQ9BWF2 SEC61G-204ENST00000450622 512 ntAPPRIS P1 TSL 2 BASIC30.05■■■□□ 2.4
TRAIPQ9BWF2 DBP-205ENST00000601104 1489 ntTSL 1 (best) BASIC30.04■■■□□ 2.4
TRAIPQ9BWF2 HOXD-AS2-202ENST00000440016 999 ntTSL 5 BASIC30.02■■■□□ 2.4
TRAIPQ9BWF2 AC004080.1-201ENST00000523608 757 ntTSL 2 BASIC30.01■■■□□ 2.39
TRAIPQ9BWF2 TWIST1-201ENST00000242261 1666 ntAPPRIS P1 TSL 1 (best) BASIC30.01■■■□□ 2.39
TRAIPQ9BWF2 IL1R1-201ENST00000409288 1735 ntTSL 5 BASIC30■■■□□ 2.39
TRAIPQ9BWF2 ZFP90-204ENST00000564323 560 ntTSL 4 BASIC30■■■□□ 2.39
TRAIPQ9BWF2 ZFP90-219ENST00000611381 695 ntTSL 1 (best) BASIC30■■■□□ 2.39
TRAIPQ9BWF2 COMMD3-201ENST00000376836 1342 ntAPPRIS P1 TSL 1 (best) BASIC29.99■■■□□ 2.39
TRAIPQ9BWF2 TRAPPC10-202ENST00000380221 1763 ntTSL 1 (best) BASIC29.98■■■□□ 2.39
TRAIPQ9BWF2 MTNR1A-201ENST00000307161 1289 ntAPPRIS P1 TSL 1 (best) BASIC29.98■■■□□ 2.39
TRAIPQ9BWF2 ECI1-203ENST00000562238 948 ntTSL 1 (best) BASIC29.98■■■□□ 2.39
TRAIPQ9BWF2 DPP6-204ENST00000406326 2012 ntTSL 1 (best) BASIC29.98■■■□□ 2.39
TRAIPQ9BWF2 GNPTAB-202ENST00000392919 760 ntTSL 1 (best) BASIC29.97■■■□□ 2.39
TRAIPQ9BWF2 AC234582.1-201ENST00000447623 923 ntTSL 5 BASIC29.96■■■□□ 2.39
TRAIPQ9BWF2 SDCCAG3-202ENST00000357365 2304 ntAPPRIS P4 TSL 5 BASIC29.96■■■□□ 2.39
TRAIPQ9BWF2 CCM2-218ENST00000541586 1719 ntTSL 3 BASIC29.96■■■□□ 2.39
TRAIPQ9BWF2 KCNK1-202ENST00000366621 2161 ntAPPRIS P1 TSL 1 (best) BASIC29.94■■■□□ 2.38
TRAIPQ9BWF2 JUND-201ENST00000252818 1863 ntAPPRIS P1 BASIC29.94■■■□□ 2.38
TRAIPQ9BWF2 H2AFV-205ENST00000381124 628 ntTSL 3 BASIC29.94■■■□□ 2.38
TRAIPQ9BWF2 FAM185A-202ENST00000413034 1179 ntAPPRIS P4 TSL 5 BASIC29.94■■■□□ 2.38
TRAIPQ9BWF2 NADK2-202ENST00000381937 2243 ntAPPRIS P1 TSL 2 BASIC29.94■■■□□ 2.38
TRAIPQ9BWF2 SAMD1-202ENST00000533683 2164 ntAPPRIS P5 TSL 1 (best) BASIC29.93■■■□□ 2.38
TRAIPQ9BWF2 CMC4-202ENST00000369484 1107 ntAPPRIS P1 TSL 1 (best) BASIC29.92■■■□□ 2.38
TRAIPQ9BWF2 STK25-202ENST00000401869 2251 ntAPPRIS P1 TSL 1 (best) BASIC29.92■■■□□ 2.38
TRAIPQ9BWF2 MIR3665-201ENST00000578708 105 ntBASIC29.91■■■□□ 2.38
TRAIPQ9BWF2 CHML-205ENST00000638160 705 ntTSL 3 BASIC29.9■■■□□ 2.38
TRAIPQ9BWF2 KCTD17-201ENST00000402077 1691 ntAPPRIS P3 TSL 1 (best) BASIC29.9■■■□□ 2.38
TRAIPQ9BWF2 TPGS1-201ENST00000359315 1114 ntAPPRIS P1 TSL 1 (best) BASIC29.89■■■□□ 2.38
TRAIPQ9BWF2 MSANTD2-203ENST00000524950 1109 ntTSL 2 BASIC29.89■■■□□ 2.38
TRAIPQ9BWF2 SH3GLB2-201ENST00000372554 1985 ntTSL 1 (best) BASIC29.88■■■□□ 2.37
TRAIPQ9BWF2 WASH5P-204ENST00000632292 975 ntBASIC29.88■■■□□ 2.37
TRAIPQ9BWF2 DENR-202ENST00000455982 1052 ntTSL 5 BASIC29.86■■■□□ 2.37
TRAIPQ9BWF2 INPP5A-202ENST00000368593 1432 ntTSL 1 (best) BASIC29.86■■■□□ 2.37
TRAIPQ9BWF2 MIR762-201ENST00000390236 83 ntBASIC29.85■■■□□ 2.37
TRAIPQ9BWF2 UBP1-201ENST00000283628 2074 ntAPPRIS P3 TSL 2 BASIC29.84■■■□□ 2.37
TRAIPQ9BWF2 CHST12-204ENST00000618655 2131 ntAPPRIS P1 TSL 1 (best) BASIC29.84■■■□□ 2.37
TRAIPQ9BWF2 CACNG6-201ENST00000252729 1853 ntAPPRIS P1 TSL 1 (best) BASIC29.84■■■□□ 2.37
TRAIPQ9BWF2 POU3F1-201ENST00000373012 2184 ntAPPRIS P1 BASIC29.83■■■□□ 2.37
TRAIPQ9BWF2 BHLHE23-201ENST00000370346 1057 ntAPPRIS P1 BASIC29.83■■■□□ 2.37
TRAIPQ9BWF2 PPP1R35-201ENST00000292330 1031 ntAPPRIS P1 TSL 1 (best) BASIC29.82■■■□□ 2.36
TRAIPQ9BWF2 VPS37D-201ENST00000324941 1624 ntAPPRIS P1 TSL 1 (best) BASIC29.82■■■□□ 2.36
Retrieved 100 of 98,524 protein–RNA pairs in 13.8 ms