Protein–RNA interactions for Protein: Q8NEM2

SHCBP1, SHC SH2 domain-binding protein 1, humanhuman

Predictions only

Length 672 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHCBP1Q8NEM2 GSC2-201ENST00000086933 1033 ntAPPRIS P1 TSL 5 BASIC32.28■■■□□ 2.76
SHCBP1Q8NEM2 DUSP15-202ENST00000339738 1454 ntAPPRIS P1 TSL 1 (best) BASIC32.28■■■□□ 2.76
SHCBP1Q8NEM2 ANKS1B-202ENST00000333732 1675 ntTSL 2 BASIC32.24■■■□□ 2.75
SHCBP1Q8NEM2 AP006261.1-201ENST00000584783 668 ntBASIC32.22■■■□□ 2.75
SHCBP1Q8NEM2 CTDNEP1-208ENST00000573600 1724 ntAPPRIS P1 TSL 5 BASIC32.22■■■□□ 2.75
SHCBP1Q8NEM2 GRK2-204ENST00000526285 1458 ntTSL 5 BASIC32.2■■■□□ 2.75
SHCBP1Q8NEM2 PABPN1-201ENST00000216727 2001 ntAPPRIS P2 TSL 1 (best) BASIC32.18■■■□□ 2.74
SHCBP1Q8NEM2 AL162393.1-201ENST00000437852 946 ntBASIC32.18■■■□□ 2.74
SHCBP1Q8NEM2 NRG1-221ENST00000614767 762 ntTSL 5 BASIC32.16■■■□□ 2.74
SHCBP1Q8NEM2 AGAP1-204ENST00000409457 2165 ntTSL 1 (best) BASIC32.16■■■□□ 2.74
SHCBP1Q8NEM2 AC004080.1-201ENST00000523608 757 ntTSL 2 BASIC32.14■■■□□ 2.74
SHCBP1Q8NEM2 KCTD17-209ENST00000610767 1502 ntAPPRIS ALT2 TSL 3 BASIC32.14■■■□□ 2.74
SHCBP1Q8NEM2 GNB5-202ENST00000358784 1735 ntAPPRIS ALT1 TSL 1 (best) BASIC32.14■■■□□ 2.74
SHCBP1Q8NEM2 CRIP2-201ENST00000329146 1857 ntAPPRIS P1 TSL 1 (best) BASIC32.14■■■□□ 2.74
SHCBP1Q8NEM2 CMC4-202ENST00000369484 1107 ntAPPRIS P1 TSL 1 (best) BASIC32.12■■■□□ 2.73
SHCBP1Q8NEM2 CYP26C1-201ENST00000285949 1569 ntAPPRIS P1 TSL 1 (best) BASIC32.11■■■□□ 2.73
SHCBP1Q8NEM2 FAAP20-204ENST00000400919 1413 ntTSL 3 BASIC32.1■■■□□ 2.73
SHCBP1Q8NEM2 ARTN-202ENST00000372359 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC32.1■■■□□ 2.73
SHCBP1Q8NEM2 C1orf122-204ENST00000468084 1234 ntAPPRIS ALT2 TSL 2 BASIC32.09■■■□□ 2.73
SHCBP1Q8NEM2 HNRNPLP2-201ENST00000568980 1570 ntBASIC32.08■■■□□ 2.73
SHCBP1Q8NEM2 MTNR1A-201ENST00000307161 1289 ntAPPRIS P1 TSL 1 (best) BASIC32.08■■■□□ 2.73
SHCBP1Q8NEM2 PPP2CB-201ENST00000221138 2006 ntAPPRIS P1 TSL 1 (best) BASIC32.08■■■□□ 2.73
SHCBP1Q8NEM2 B4GALT7-201ENST00000029410 1747 ntAPPRIS P1 TSL 1 (best) BASIC32.07■■■□□ 2.72
SHCBP1Q8NEM2 EBPL-202ENST00000378268 680 ntTSL 3 BASIC32.06■■■□□ 2.72
SHCBP1Q8NEM2 BHLHE23-201ENST00000370346 1057 ntAPPRIS P1 BASIC32.05■■■□□ 2.72
SHCBP1Q8NEM2 SIGMAR1-205ENST00000477726 840 ntTSL 1 (best) BASIC32.05■■■□□ 2.72
SHCBP1Q8NEM2 ZFP90-204ENST00000564323 560 ntTSL 4 BASIC32.05■■■□□ 2.72
SHCBP1Q8NEM2 ZFP90-219ENST00000611381 695 ntTSL 1 (best) BASIC32.05■■■□□ 2.72
SHCBP1Q8NEM2 CCNYL1-205ENST00000420822 952 ntTSL 1 (best) BASIC32.04■■■□□ 2.72
SHCBP1Q8NEM2 SEC61G-204ENST00000450622 512 ntAPPRIS P1 TSL 2 BASIC32.04■■■□□ 2.72
SHCBP1Q8NEM2 NFKBIA-209ENST00000557389 1537 ntTSL 2 BASIC32.04■■■□□ 2.72
SHCBP1Q8NEM2 GNPTAB-202ENST00000392919 760 ntTSL 1 (best) BASIC32.03■■■□□ 2.72
SHCBP1Q8NEM2 AKR1E2-201ENST00000298375 1566 ntAPPRIS P1 TSL 1 (best) BASIC32.02■■■□□ 2.72
SHCBP1Q8NEM2 CMAS-201ENST00000229329 1787 ntAPPRIS P1 TSL 1 (best) BASIC32■■■□□ 2.71
SHCBP1Q8NEM2 PPP1R35-201ENST00000292330 1031 ntAPPRIS P1 TSL 1 (best) BASIC31.99■■■□□ 2.71
SHCBP1Q8NEM2 ECI1-203ENST00000562238 948 ntTSL 1 (best) BASIC31.99■■■□□ 2.71
SHCBP1Q8NEM2 SFRP5-201ENST00000266066 1836 ntAPPRIS P1 TSL 1 (best) BASIC31.98■■■□□ 2.71
SHCBP1Q8NEM2 GIPC1-201ENST00000345425 1782 ntAPPRIS P1 TSL 1 (best) BASIC31.97■■■□□ 2.71
SHCBP1Q8NEM2 H2AFV-205ENST00000381124 628 ntTSL 3 BASIC31.95■■■□□ 2.71
SHCBP1Q8NEM2 FAM185A-202ENST00000413034 1179 ntAPPRIS P4 TSL 5 BASIC31.95■■■□□ 2.71
SHCBP1Q8NEM2 CHCHD4-201ENST00000295767 1603 ntTSL 2 BASIC31.95■■■□□ 2.71
SHCBP1Q8NEM2 MIR3665-201ENST00000578708 105 ntBASIC31.93■■■□□ 2.7
SHCBP1Q8NEM2 MSANTD2-203ENST00000524950 1109 ntTSL 2 BASIC31.9■■■□□ 2.7
SHCBP1Q8NEM2 RHOC-208ENST00000369642 1355 ntAPPRIS P1 TSL 1 (best) BASIC31.89■■■□□ 2.7
SHCBP1Q8NEM2 ADRA2C-201ENST00000330055 2129 ntAPPRIS P1 BASIC31.88■■■□□ 2.69
SHCBP1Q8NEM2 SLC22A23-201ENST00000380298 1574 ntTSL 1 (best) BASIC31.88■■■□□ 2.69
SHCBP1Q8NEM2 FBRSL1-201ENST00000434748 5568 ntAPPRIS P2 TSL 1 (best) BASIC31.88■■■□□ 2.69
SHCBP1Q8NEM2 FAM89B-201ENST00000316409 1409 ntTSL 1 (best) BASIC31.87■■■□□ 2.69
SHCBP1Q8NEM2 HOXD-AS2-202ENST00000440016 999 ntTSL 5 BASIC31.87■■■□□ 2.69
SHCBP1Q8NEM2 ACOT7-209ENST00000545482 1804 ntAPPRIS ALT2 TSL 1 (best) BASIC31.86■■■□□ 2.69
SHCBP1Q8NEM2 COMMD3-201ENST00000376836 1342 ntAPPRIS P1 TSL 1 (best) BASIC31.85■■■□□ 2.69
SHCBP1Q8NEM2 AC243773.2-204ENST00000621428 1462 ntTSL 1 (best) BASIC31.84■■■□□ 2.69
SHCBP1Q8NEM2 COX4I1-203ENST00000562336 873 ntAPPRIS P1 TSL 5 BASIC31.84■■■□□ 2.69
SHCBP1Q8NEM2 ZFAND2B-206ENST00000409336 944 ntAPPRIS P1 TSL 5 BASIC31.83■■■□□ 2.69
SHCBP1Q8NEM2 ZFAND2B-221ENST00000621130 1070 ntTSL 5 BASIC31.83■■■□□ 2.69
SHCBP1Q8NEM2 ANXA5-201ENST00000296511 1762 ntAPPRIS P1 TSL 1 (best) BASIC31.83■■■□□ 2.69
SHCBP1Q8NEM2 MAPK4-202ENST00000540640 1576 ntTSL 2 BASIC31.82■■■□□ 2.68
SHCBP1Q8NEM2 MPST-201ENST00000341116 1504 ntAPPRIS P1 TSL 5 BASIC31.82■■■□□ 2.68
SHCBP1Q8NEM2 AC009097.4-201ENST00000566738 777 ntTSL 2 BASIC31.81■■■□□ 2.68
SHCBP1Q8NEM2 CHML-205ENST00000638160 705 ntTSL 3 BASIC31.81■■■□□ 2.68
SHCBP1Q8NEM2 PGAM5-201ENST00000317555 1182 ntTSL 1 (best) BASIC31.8■■■□□ 2.68
SHCBP1Q8NEM2 AC234582.1-201ENST00000447623 923 ntTSL 5 BASIC31.79■■■□□ 2.68
SHCBP1Q8NEM2 TGIF1-202ENST00000343820 2076 ntAPPRIS P1 TSL 1 (best) BASIC31.79■■■□□ 2.68
SHCBP1Q8NEM2 DUX4L28-201ENST00000623687 678 ntBASIC31.78■■■□□ 2.68
SHCBP1Q8NEM2 TPGS1-201ENST00000359315 1114 ntAPPRIS P1 TSL 1 (best) BASIC31.77■■■□□ 2.68
SHCBP1Q8NEM2 MAPK3-201ENST00000263025 1861 ntAPPRIS P3 TSL 1 (best) BASIC31.77■■■□□ 2.68
SHCBP1Q8NEM2 AC087741.3-201ENST00000624270 1347 ntBASIC31.76■■■□□ 2.68
SHCBP1Q8NEM2 B4GALT2-203ENST00000372324 2203 ntAPPRIS P1 TSL 1 (best) BASIC31.76■■■□□ 2.68
SHCBP1Q8NEM2 NPHP3-202ENST00000383282 782 ntTSL 1 (best) BASIC31.76■■■□□ 2.67
SHCBP1Q8NEM2 MIR762-201ENST00000390236 83 ntBASIC31.76■■■□□ 2.67
SHCBP1Q8NEM2 CSNK1E-205ENST00000405675 2127 ntTSL 5 BASIC31.71■■■□□ 2.67
SHCBP1Q8NEM2 AC005559.1-201ENST00000589661 871 ntBASIC31.68■■■□□ 2.66
SHCBP1Q8NEM2 INPP5A-202ENST00000368593 1432 ntTSL 1 (best) BASIC31.66■■■□□ 2.66
SHCBP1Q8NEM2 INO80B-WBP1-202ENST00000452361 2040 ntAPPRIS P5 TSL 2 BASIC31.65■■■□□ 2.66
SHCBP1Q8NEM2 DENR-202ENST00000455982 1052 ntTSL 5 BASIC31.65■■■□□ 2.66
SHCBP1Q8NEM2 AP000911.1-206ENST00000531938 711 ntTSL 3 BASIC31.65■■■□□ 2.66
SHCBP1Q8NEM2 ABHD17AP4-201ENST00000411545 909 ntBASIC31.63■■■□□ 2.65
SHCBP1Q8NEM2 AC012629.2-201ENST00000606513 377 ntTSL 5 BASIC31.63■■■□□ 2.65
SHCBP1Q8NEM2 AC044849.2-201ENST00000606596 710 ntBASIC31.63■■■□□ 2.65
SHCBP1Q8NEM2 CCM2-218ENST00000541586 1719 ntTSL 3 BASIC31.63■■■□□ 2.65
SHCBP1Q8NEM2 DBP-205ENST00000601104 1489 ntTSL 1 (best) BASIC31.6■■■□□ 2.65
SHCBP1Q8NEM2 HSPB11-201ENST00000194214 915 ntAPPRIS P1 TSL 1 (best) BASIC31.6■■■□□ 2.65
SHCBP1Q8NEM2 GFRA4-202ENST00000319242 900 ntAPPRIS P4 TSL 1 (best) BASIC31.6■■■□□ 2.65
SHCBP1Q8NEM2 MLEC-202ENST00000412616 841 ntTSL 3 BASIC31.6■■■□□ 2.65
SHCBP1Q8NEM2 NXNL1-201ENST00000301944 946 ntAPPRIS P1 TSL 1 (best) BASIC31.59■■■□□ 2.65
SHCBP1Q8NEM2 COPRS-202ENST00000378634 1041 ntTSL 2 BASIC31.59■■■□□ 2.65
SHCBP1Q8NEM2 GRASP-206ENST00000552049 1688 ntTSL 1 (best) BASIC31.59■■■□□ 2.65
SHCBP1Q8NEM2 RCC1L-205ENST00000618035 1409 ntTSL 1 (best) BASIC31.58■■■□□ 2.65
SHCBP1Q8NEM2 NKIRAS2-202ENST00000316082 833 ntTSL 5 BASIC31.58■■■□□ 2.65
SHCBP1Q8NEM2 AC104109.3-201ENST00000519718 483 ntAPPRIS P1 TSL 5 BASIC31.58■■■□□ 2.65
SHCBP1Q8NEM2 WASH5P-204ENST00000632292 975 ntBASIC31.58■■■□□ 2.65
SHCBP1Q8NEM2 MPST-206ENST00000429360 1331 ntTSL 1 (best) BASIC31.56■■■□□ 2.64
SHCBP1Q8NEM2 KIAA2013-203ENST00000616327 2170 ntAPPRIS P1 TSL 5 BASIC31.56■■■□□ 2.64
SHCBP1Q8NEM2 SMIM12-205ENST00000456842 918 ntAPPRIS P1 TSL 2 BASIC31.55■■■□□ 2.64
SHCBP1Q8NEM2 MISP3-201ENST00000269720 1424 ntAPPRIS ALT2 TSL 5 BASIC31.55■■■□□ 2.64
SHCBP1Q8NEM2 MIR7108-201ENST00000614319 87 ntBASIC31.53■■■□□ 2.64
SHCBP1Q8NEM2 KCTD17-201ENST00000402077 1691 ntAPPRIS P3 TSL 1 (best) BASIC31.52■■■□□ 2.64
SHCBP1Q8NEM2 TRAPPC10-202ENST00000380221 1763 ntTSL 1 (best) BASIC31.5■■■□□ 2.63
SHCBP1Q8NEM2 SSU72-201ENST00000291386 1290 ntAPPRIS P1 TSL 1 (best) BASIC31.48■■■□□ 2.63
SHCBP1Q8NEM2 SRSF9-201ENST00000229390 1201 ntAPPRIS P1 TSL 1 (best) BASIC31.41■■■□□ 2.62
Retrieved 100 of 98,524 protein–RNA pairs in 28.7 ms