Protein–RNA interactions for Protein: Q8N3V7

SYNPO, Synaptopodin, humanhuman

Predictions only

Length 929 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPOQ8N3V7 RASSF7-201ENST00000397582 1731 ntAPPRIS ALT2 TSL 2 BASIC28.72■■■□□ 2.19
SYNPOQ8N3V7 CMC4-202ENST00000369484 1107 ntAPPRIS P1 TSL 1 (best) BASIC28.71■■■□□ 2.19
SYNPOQ8N3V7 BHLHE23-201ENST00000370346 1057 ntAPPRIS P1 BASIC28.71■■■□□ 2.19
SYNPOQ8N3V7 GSC2-201ENST00000086933 1033 ntAPPRIS P1 TSL 5 BASIC28.71■■■□□ 2.19
SYNPOQ8N3V7 AL162393.1-201ENST00000437852 946 ntBASIC28.7■■■□□ 2.18
SYNPOQ8N3V7 DUSP15-202ENST00000339738 1454 ntAPPRIS P1 TSL 1 (best) BASIC28.7■■■□□ 2.18
SYNPOQ8N3V7 AL133380.1-201ENST00000506013 324 ntBASIC28.67■■■□□ 2.18
SYNPOQ8N3V7 PCYT2-205ENST00000570391 1857 ntTSL 2 BASIC28.67■■■□□ 2.18
SYNPOQ8N3V7 CDKN2D-202ENST00000393599 1422 ntAPPRIS P1 TSL 1 (best) BASIC28.67■■■□□ 2.18
SYNPOQ8N3V7 NRG1-221ENST00000614767 762 ntTSL 5 BASIC28.64■■■□□ 2.18
SYNPOQ8N3V7 AC004080.1-201ENST00000523608 757 ntTSL 2 BASIC28.61■■■□□ 2.17
SYNPOQ8N3V7 SEC61G-204ENST00000450622 512 ntAPPRIS P1 TSL 2 BASIC28.6■■■□□ 2.17
SYNPOQ8N3V7 HNRNPLP2-201ENST00000568980 1570 ntBASIC28.59■■■□□ 2.17
SYNPOQ8N3V7 LTB4R2-204ENST00000533293 1515 ntAPPRIS P1 TSL 1 (best) BASIC28.59■■■□□ 2.17
SYNPOQ8N3V7 PPP1R35-201ENST00000292330 1031 ntAPPRIS P1 TSL 1 (best) BASIC28.58■■■□□ 2.17
SYNPOQ8N3V7 MTNR1A-201ENST00000307161 1289 ntAPPRIS P1 TSL 1 (best) BASIC28.58■■■□□ 2.17
SYNPOQ8N3V7 GIPC1-202ENST00000393028 1483 ntTSL 3 BASIC28.55■■■□□ 2.16
SYNPOQ8N3V7 ZFP90-204ENST00000564323 560 ntTSL 4 BASIC28.55■■■□□ 2.16
SYNPOQ8N3V7 ZFP90-219ENST00000611381 695 ntTSL 1 (best) BASIC28.55■■■□□ 2.16
SYNPOQ8N3V7 GNPTAB-202ENST00000392919 760 ntTSL 1 (best) BASIC28.52■■■□□ 2.16
SYNPOQ8N3V7 TPRG1L-201ENST00000344579 2189 ntTSL 1 (best) BASIC28.52■■■□□ 2.16
SYNPOQ8N3V7 EBPL-202ENST00000378268 680 ntTSL 3 BASIC28.51■■■□□ 2.15
SYNPOQ8N3V7 FAAP20-204ENST00000400919 1413 ntTSL 3 BASIC28.51■■■□□ 2.15
SYNPOQ8N3V7 INO80B-WBP1-202ENST00000452361 2040 ntAPPRIS P5 TSL 2 BASIC28.5■■■□□ 2.15
SYNPOQ8N3V7 FAM185A-202ENST00000413034 1179 ntAPPRIS P4 TSL 5 BASIC28.5■■■□□ 2.15
SYNPOQ8N3V7 SIGMAR1-205ENST00000477726 840 ntTSL 1 (best) BASIC28.5■■■□□ 2.15
SYNPOQ8N3V7 MIR3665-201ENST00000578708 105 ntBASIC28.5■■■□□ 2.15
SYNPOQ8N3V7 ANKS1B-202ENST00000333732 1675 ntTSL 2 BASIC28.49■■■□□ 2.15
SYNPOQ8N3V7 GRK2-204ENST00000526285 1458 ntTSL 5 BASIC28.49■■■□□ 2.15
SYNPOQ8N3V7 ZFAND2B-206ENST00000409336 944 ntAPPRIS P1 TSL 5 BASIC28.49■■■□□ 2.15
SYNPOQ8N3V7 C1orf122-204ENST00000468084 1234 ntAPPRIS ALT2 TSL 2 BASIC28.49■■■□□ 2.15
SYNPOQ8N3V7 ZFAND2B-221ENST00000621130 1070 ntTSL 5 BASIC28.49■■■□□ 2.15
SYNPOQ8N3V7 CCNYL1-205ENST00000420822 952 ntTSL 1 (best) BASIC28.48■■■□□ 2.15
SYNPOQ8N3V7 H2AFV-205ENST00000381124 628 ntTSL 3 BASIC28.46■■■□□ 2.15
SYNPOQ8N3V7 MAPK3-201ENST00000263025 1861 ntAPPRIS P3 TSL 1 (best) BASIC28.46■■■□□ 2.15
SYNPOQ8N3V7 B4GALT2-203ENST00000372324 2203 ntAPPRIS P1 TSL 1 (best) BASIC28.45■■■□□ 2.14
SYNPOQ8N3V7 MAPK3-202ENST00000322266 1743 ntTSL 5 BASIC28.43■■■□□ 2.14
SYNPOQ8N3V7 PABPN1-201ENST00000216727 2001 ntAPPRIS P2 TSL 1 (best) BASIC28.43■■■□□ 2.14
SYNPOQ8N3V7 ECI1-203ENST00000562238 948 ntTSL 1 (best) BASIC28.43■■■□□ 2.14
SYNPOQ8N3V7 FAM89B-201ENST00000316409 1409 ntTSL 1 (best) BASIC28.43■■■□□ 2.14
SYNPOQ8N3V7 MSANTD2-203ENST00000524950 1109 ntTSL 2 BASIC28.42■■■□□ 2.14
SYNPOQ8N3V7 AC009097.4-201ENST00000566738 777 ntTSL 2 BASIC28.42■■■□□ 2.14
SYNPOQ8N3V7 NPHP3-202ENST00000383282 782 ntTSL 1 (best) BASIC28.4■■■□□ 2.14
SYNPOQ8N3V7 COX4I1-203ENST00000562336 873 ntAPPRIS P1 TSL 5 BASIC28.37■■■□□ 2.13
SYNPOQ8N3V7 KCTD17-209ENST00000610767 1502 ntAPPRIS ALT2 TSL 3 BASIC28.35■■■□□ 2.13
SYNPOQ8N3V7 PGAM5-201ENST00000317555 1182 ntTSL 1 (best) BASIC28.33■■■□□ 2.13
SYNPOQ8N3V7 CHML-205ENST00000638160 705 ntTSL 3 BASIC28.32■■■□□ 2.12
SYNPOQ8N3V7 COMMD3-201ENST00000376836 1342 ntAPPRIS P1 TSL 1 (best) BASIC28.31■■■□□ 2.12
SYNPOQ8N3V7 AC087741.3-201ENST00000624270 1347 ntBASIC28.3■■■□□ 2.12
SYNPOQ8N3V7 ABHD17AP4-201ENST00000411545 909 ntBASIC28.3■■■□□ 2.12
SYNPOQ8N3V7 GNB5-202ENST00000358784 1735 ntAPPRIS ALT1 TSL 1 (best) BASIC28.29■■■□□ 2.12
SYNPOQ8N3V7 CYP26C1-201ENST00000285949 1569 ntAPPRIS P1 TSL 1 (best) BASIC28.29■■■□□ 2.12
SYNPOQ8N3V7 NXNL1-201ENST00000301944 946 ntAPPRIS P1 TSL 1 (best) BASIC28.29■■■□□ 2.12
SYNPOQ8N3V7 MLEC-202ENST00000412616 841 ntTSL 3 BASIC28.28■■■□□ 2.12
SYNPOQ8N3V7 HOXD-AS2-202ENST00000440016 999 ntTSL 5 BASIC28.27■■■□□ 2.12
SYNPOQ8N3V7 AC234582.1-201ENST00000447623 923 ntTSL 5 BASIC28.27■■■□□ 2.12
SYNPOQ8N3V7 AC243773.2-204ENST00000621428 1462 ntTSL 1 (best) BASIC28.27■■■□□ 2.12
SYNPOQ8N3V7 RHOC-208ENST00000369642 1355 ntAPPRIS P1 TSL 1 (best) BASIC28.26■■■□□ 2.12
SYNPOQ8N3V7 HSPB11-201ENST00000194214 915 ntAPPRIS P1 TSL 1 (best) BASIC28.26■■■□□ 2.11
SYNPOQ8N3V7 DUX4L28-201ENST00000623687 678 ntBASIC28.26■■■□□ 2.11
SYNPOQ8N3V7 GIPC1-201ENST00000345425 1782 ntAPPRIS P1 TSL 1 (best) BASIC28.26■■■□□ 2.11
SYNPOQ8N3V7 MIR762-201ENST00000390236 83 ntBASIC28.24■■■□□ 2.11
SYNPOQ8N3V7 AP000911.1-206ENST00000531938 711 ntTSL 3 BASIC28.24■■■□□ 2.11
SYNPOQ8N3V7 MIR7108-201ENST00000614319 87 ntBASIC28.24■■■□□ 2.11
SYNPOQ8N3V7 CTDNEP1-208ENST00000573600 1724 ntAPPRIS P1 TSL 5 BASIC28.23■■■□□ 2.11
SYNPOQ8N3V7 AC044849.2-201ENST00000606596 710 ntBASIC28.23■■■□□ 2.11
SYNPOQ8N3V7 AKR1E2-201ENST00000298375 1566 ntAPPRIS P1 TSL 1 (best) BASIC28.21■■■□□ 2.11
SYNPOQ8N3V7 SLC22A23-201ENST00000380298 1574 ntTSL 1 (best) BASIC28.21■■■□□ 2.11
SYNPOQ8N3V7 NFKBIA-209ENST00000557389 1537 ntTSL 2 BASIC28.21■■■□□ 2.11
SYNPOQ8N3V7 CHCHD4-201ENST00000295767 1603 ntTSL 2 BASIC28.21■■■□□ 2.11
SYNPOQ8N3V7 CRIP2-201ENST00000329146 1857 ntAPPRIS P1 TSL 1 (best) BASIC28.21■■■□□ 2.11
SYNPOQ8N3V7 COPRS-202ENST00000378634 1041 ntTSL 2 BASIC28.2■■■□□ 2.1
SYNPOQ8N3V7 AC005559.1-201ENST00000589661 871 ntBASIC28.2■■■□□ 2.1
SYNPOQ8N3V7 ARTN-202ENST00000372359 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC28.2■■■□□ 2.1
SYNPOQ8N3V7 B4GALT7-201ENST00000029410 1747 ntAPPRIS P1 TSL 1 (best) BASIC28.18■■■□□ 2.1
SYNPOQ8N3V7 CMAS-201ENST00000229329 1787 ntAPPRIS P1 TSL 1 (best) BASIC28.18■■■□□ 2.1
SYNPOQ8N3V7 TPGS1-201ENST00000359315 1114 ntAPPRIS P1 TSL 1 (best) BASIC28.16■■■□□ 2.1
SYNPOQ8N3V7 AGAP1-204ENST00000409457 2165 ntTSL 1 (best) BASIC28.16■■■□□ 2.1
SYNPOQ8N3V7 MPST-206ENST00000429360 1331 ntTSL 1 (best) BASIC28.15■■■□□ 2.1
SYNPOQ8N3V7 NKIRAS2-202ENST00000316082 833 ntTSL 5 BASIC28.14■■■□□ 2.1
SYNPOQ8N3V7 AC104109.3-201ENST00000519718 483 ntAPPRIS P1 TSL 5 BASIC28.1■■■□□ 2.09
SYNPOQ8N3V7 AC012629.2-201ENST00000606513 377 ntTSL 5 BASIC28.1■■■□□ 2.09
SYNPOQ8N3V7 DENR-202ENST00000455982 1052 ntTSL 5 BASIC28.09■■■□□ 2.09
SYNPOQ8N3V7 GFRA4-202ENST00000319242 900 ntAPPRIS P4 TSL 1 (best) BASIC28.08■■■□□ 2.09
SYNPOQ8N3V7 SMIM12-205ENST00000456842 918 ntAPPRIS P1 TSL 2 BASIC28.08■■■□□ 2.09
SYNPOQ8N3V7 UBALD1-202ENST00000587615 799 ntTSL 2 BASIC28.08■■■□□ 2.09
SYNPOQ8N3V7 MAPK4-202ENST00000540640 1576 ntTSL 2 BASIC28.07■■■□□ 2.08
SYNPOQ8N3V7 SLC25A10-203ENST00000545862 1911 ntTSL 1 (best) BASIC28.06■■■□□ 2.08
SYNPOQ8N3V7 MPST-201ENST00000341116 1504 ntAPPRIS P1 TSL 5 BASIC28.05■■■□□ 2.08
SYNPOQ8N3V7 RCC1L-205ENST00000618035 1409 ntTSL 1 (best) BASIC28.04■■■□□ 2.08
SYNPOQ8N3V7 PVT1-219ENST00000523427 938 ntTSL 3 BASIC28.04■■■□□ 2.08
SYNPOQ8N3V7 INPP5A-202ENST00000368593 1432 ntTSL 1 (best) BASIC28.03■■■□□ 2.08
SYNPOQ8N3V7 TRAM2-AS1-201ENST00000453216 664 ntTSL 3 BASIC28.03■■■□□ 2.08
SYNPOQ8N3V7 SFRP5-201ENST00000266066 1836 ntAPPRIS P1 TSL 1 (best) BASIC28.03■■■□□ 2.08
SYNPOQ8N3V7 MISP3-201ENST00000269720 1424 ntAPPRIS ALT2 TSL 5 BASIC28.02■■■□□ 2.08
SYNPOQ8N3V7 ZNF706-207ENST00000519882 959 ntAPPRIS P1 TSL 3 BASIC28■■■□□ 2.07
SYNPOQ8N3V7 ZNF706-213ENST00000521272 732 ntAPPRIS P1 TSL 5 BASIC28■■■□□ 2.07
SYNPOQ8N3V7 SRSF9-201ENST00000229390 1201 ntAPPRIS P1 TSL 1 (best) BASIC27.99■■■□□ 2.07
SYNPOQ8N3V7 PDCD2-209ENST00000542896 1082 ntTSL 2 BASIC27.99■■■□□ 2.07
SYNPOQ8N3V7 BOD1-201ENST00000285908 1286 ntTSL 1 (best) BASIC27.98■■■□□ 2.07
Retrieved 100 of 98,524 protein–RNA pairs in 30.5 ms