Protein–RNA interactions for Protein: S4R434

TMEM56-RWDD3, TMEM56-RWDD3 readthrough, humanhuman

Predictions only

Length 201 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM56-RWDD3S4R434 RAPH1-210ENST00000453034 2394 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
TMEM56-RWDD3S4R434 ADORA2B-201ENST00000304222 1735 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
TMEM56-RWDD3S4R434 LINC00092-201ENST00000412122 1726 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
TMEM56-RWDD3S4R434 IER2-201ENST00000292433 2085 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
TMEM56-RWDD3S4R434 SLC29A1-207ENST00000393841 2485 ntAPPRIS P1 TSL 2 BASIC18.4■□□□□ 0.54
TMEM56-RWDD3S4R434 VGF-202ENST00000445482 2477 ntAPPRIS P1 TSL 5 BASIC18.4■□□□□ 0.54
TMEM56-RWDD3S4R434 NAE1-202ENST00000359087 1825 ntTSL 2 BASIC18.39■□□□□ 0.54
TMEM56-RWDD3S4R434 ADAD2-201ENST00000268624 2283 ntAPPRIS P3 TSL 2 BASIC18.39■□□□□ 0.54
TMEM56-RWDD3S4R434 TULP1-202ENST00000322263 1941 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
TMEM56-RWDD3S4R434 ZFYVE19-201ENST00000299173 1555 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
TMEM56-RWDD3S4R434 IRF3-228ENST00000601291 1556 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
TMEM56-RWDD3S4R434 CACNG2-201ENST00000300105 2384 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
TMEM56-RWDD3S4R434 DISC1-223ENST00000628350 2363 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
TMEM56-RWDD3S4R434 ADCK2-203ENST00000476491 2092 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
TMEM56-RWDD3S4R434 PPP3CC-202ENST00000289963 2135 ntAPPRIS ALT1 TSL 1 (best) BASIC18.39■□□□□ 0.53
TMEM56-RWDD3S4R434 CFAP77-202ENST00000393215 901 ntAPPRIS ALT2 TSL 5 BASIC18.39■□□□□ 0.53
TMEM56-RWDD3S4R434 RPS2-202ENST00000526522 924 ntTSL 2 BASIC18.39■□□□□ 0.53
TMEM56-RWDD3S4R434 UBE2E3-213ENST00000602959 909 ntAPPRIS P1 TSL 5 BASIC18.39■□□□□ 0.53
TMEM56-RWDD3S4R434 NEURL4-201ENST00000315614 5182 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
TMEM56-RWDD3S4R434 IRX2-202ENST00000382611 2630 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
TMEM56-RWDD3S4R434 TTC34-202ENST00000637179 1775 ntAPPRIS P2 TSL 5 BASIC18.39■□□□□ 0.53
TMEM56-RWDD3S4R434 ILDR2-205ENST00000526687 2299 ntTSL 5 BASIC18.39■□□□□ 0.53
TMEM56-RWDD3S4R434 GPRC5B-210ENST00000569847 1830 ntAPPRIS P2 TSL 2 BASIC18.39■□□□□ 0.53
TMEM56-RWDD3S4R434 GABBR2-201ENST00000259455 5788 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
TMEM56-RWDD3S4R434 DISC1-220ENST00000602873 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
TMEM56-RWDD3S4R434 FDFT1-201ENST00000220584 2176 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
TMEM56-RWDD3S4R434 SLC35F5-203ENST00000409342 2284 ntTSL 2 BASIC18.38■□□□□ 0.53
TMEM56-RWDD3S4R434 ASPSCR1-202ENST00000306739 1843 ntAPPRIS P3 TSL 1 (best) BASIC18.38■□□□□ 0.53
TMEM56-RWDD3S4R434 CCDC7-201ENST00000277657 1899 ntAPPRIS P2 TSL 1 (best) BASIC18.38■□□□□ 0.53
TMEM56-RWDD3S4R434 IDNK-203ENST00000405990 629 ntTSL 2 BASIC18.38■□□□□ 0.53
TMEM56-RWDD3S4R434 GPX1-201ENST00000419349 1106 ntBASIC18.38■□□□□ 0.53
TMEM56-RWDD3S4R434 WDR86-208ENST00000628331 1905 ntTSL 5 BASIC18.38■□□□□ 0.53
TMEM56-RWDD3S4R434 HABP4-201ENST00000375249 2615 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
TMEM56-RWDD3S4R434 SLC12A5-AS1-202ENST00000535913 1957 ntTSL 2 BASIC18.38■□□□□ 0.53
TMEM56-RWDD3S4R434 MADCAM1-202ENST00000346144 1309 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
TMEM56-RWDD3S4R434 RBFOX2-209ENST00000438146 1356 ntAPPRIS P3 TSL 1 (best) BASIC18.38■□□□□ 0.53
TMEM56-RWDD3S4R434 PARD3-202ENST00000346874 5894 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
TMEM56-RWDD3S4R434 PARD3-203ENST00000350537 5867 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
TMEM56-RWDD3S4R434 RBM42-205ENST00000589871 1487 ntTSL 5 BASIC18.38■□□□□ 0.53
TMEM56-RWDD3S4R434 MYB-221ENST00000527615 2381 ntTSL 5 BASIC18.38■□□□□ 0.53
TMEM56-RWDD3S4R434 TGIF1-206ENST00000405385 1689 ntTSL 2 BASIC18.38■□□□□ 0.53
TMEM56-RWDD3S4R434 KEAP1-202ENST00000393623 2648 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
TMEM56-RWDD3S4R434 NPHS2-201ENST00000367615 1855 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
TMEM56-RWDD3S4R434 FAM66C-208ENST00000541558 2087 ntTSL 2 BASIC18.37■□□□□ 0.53
TMEM56-RWDD3S4R434 AC005906.2-202ENST00000638821 2168 ntTSL 5 BASIC18.37■□□□□ 0.53
TMEM56-RWDD3S4R434 CLN6-201ENST00000249806 2243 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
TMEM56-RWDD3S4R434 NXNL1-201ENST00000301944 946 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
TMEM56-RWDD3S4R434 MAP3K8-203ENST00000375322 932 ntTSL 2 BASIC18.37■□□□□ 0.53
TMEM56-RWDD3S4R434 AC011551.1-201ENST00000614101 683 ntBASIC18.37■□□□□ 0.53
TMEM56-RWDD3S4R434 PSMG3-202ENST00000288607 1391 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
TMEM56-RWDD3S4R434 TRIM3-201ENST00000345851 2879 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
TMEM56-RWDD3S4R434 IRF3-227ENST00000600911 1637 ntTSL 5 BASIC18.37■□□□□ 0.53
TMEM56-RWDD3S4R434 PTPN13-205ENST00000502971 1708 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
TMEM56-RWDD3S4R434 METTL9-202ENST00000396014 1817 ntAPPRIS ALT1 TSL 1 (best) BASIC18.37■□□□□ 0.53
TMEM56-RWDD3S4R434 RNF39-202ENST00000376751 1970 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
TMEM56-RWDD3S4R434 RANBP10-202ENST00000448631 2232 ntTSL 2 BASIC18.37■□□□□ 0.53
TMEM56-RWDD3S4R434 VGLL3-201ENST00000383698 2475 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
TMEM56-RWDD3S4R434 ALDH16A1-202ENST00000455361 2470 ntTSL 2 BASIC18.37■□□□□ 0.53
TMEM56-RWDD3S4R434 FMNL2-201ENST00000288670 5575 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
TMEM56-RWDD3S4R434 EVX1-201ENST00000222761 1500 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
TMEM56-RWDD3S4R434 KCNIP1-201ENST00000328939 2014 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
TMEM56-RWDD3S4R434 CTGF-201ENST00000367976 2339 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
TMEM56-RWDD3S4R434 RASGRP2-210ENST00000394430 2174 ntTSL 2 BASIC18.36■□□□□ 0.53
TMEM56-RWDD3S4R434 PFKFB4-204ENST00000416568 1575 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
TMEM56-RWDD3S4R434 ACOT12-204ENST00000513751 612 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
TMEM56-RWDD3S4R434 TMEM9B-205ENST00000534025 2083 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
TMEM56-RWDD3S4R434 MIR7108-201ENST00000614319 87 ntBASIC18.36■□□□□ 0.53
TMEM56-RWDD3S4R434 AC079630.1-202ENST00000618127 1840 ntBASIC18.36■□□□□ 0.53
TMEM56-RWDD3S4R434 MTCH2-201ENST00000302503 2587 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
TMEM56-RWDD3S4R434 MAGI2-202ENST00000419488 6800 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
TMEM56-RWDD3S4R434 PSPH-202ENST00000395471 2178 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
TMEM56-RWDD3S4R434 CCDC92-209ENST00000545891 1790 ntAPPRIS P1 TSL 2 BASIC18.35■□□□□ 0.53
TMEM56-RWDD3S4R434 SYT6-209ENST00000610222 1707 ntAPPRIS P1 TSL 5 BASIC18.35■□□□□ 0.53
TMEM56-RWDD3S4R434 NMI-201ENST00000243346 1623 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
TMEM56-RWDD3S4R434 SPRED3-204ENST00000587013 1539 ntTSL 5 BASIC18.35■□□□□ 0.53
TMEM56-RWDD3S4R434 C19orf12-207ENST00000592153 1504 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
TMEM56-RWDD3S4R434 GAS2L1-206ENST00000610653 2238 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
TMEM56-RWDD3S4R434 PLPP5-209ENST00000529359 2185 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
TMEM56-RWDD3S4R434 TMEM159-201ENST00000233047 2014 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
TMEM56-RWDD3S4R434 ARF1-213ENST00000540651 1972 ntAPPRIS P1 TSL 2 BASIC18.35■□□□□ 0.53
TMEM56-RWDD3S4R434 MALT1-201ENST00000345724 2866 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
TMEM56-RWDD3S4R434 NIPSNAP2-205ENST00000446778 1882 ntTSL 2 BASIC18.35■□□□□ 0.53
TMEM56-RWDD3S4R434 NFKBID-201ENST00000396901 1834 ntAPPRIS P2 TSL 1 (best) BASIC18.35■□□□□ 0.53
TMEM56-RWDD3S4R434 NFKBID-211ENST00000641389 1834 ntAPPRIS ALT2 BASIC18.35■□□□□ 0.53
TMEM56-RWDD3S4R434 PTP4A3-204ENST00000521578 1717 ntAPPRIS P1 TSL 5 BASIC18.35■□□□□ 0.53
TMEM56-RWDD3S4R434 RHOT1-205ENST00000545287 2516 ntAPPRIS P4 TSL 5 BASIC18.34■□□□□ 0.53
TMEM56-RWDD3S4R434 HNRNPD-202ENST00000352301 1667 ntAPPRIS ALT1 TSL 1 (best) BASIC18.34■□□□□ 0.53
TMEM56-RWDD3S4R434 ZDHHC16-203ENST00000353979 1647 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
TMEM56-RWDD3S4R434 AC139530.1-201ENST00000575312 1977 ntBASIC18.34■□□□□ 0.53
TMEM56-RWDD3S4R434 MMP21-201ENST00000368808 1919 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
TMEM56-RWDD3S4R434 MPC1-201ENST00000341756 976 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
TMEM56-RWDD3S4R434 TNFRSF4-201ENST00000379236 1068 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
TMEM56-RWDD3S4R434 PTPMT1-203ENST00000426530 1014 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
TMEM56-RWDD3S4R434 SPCS2P3-201ENST00000500401 656 ntBASIC18.34■□□□□ 0.53
TMEM56-RWDD3S4R434 HERC2P9-201ENST00000507787 1023 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
TMEM56-RWDD3S4R434 MPC1-206ENST00000621630 977 ntAPPRIS ALT1 TSL 5 BASIC18.34■□□□□ 0.53
TMEM56-RWDD3S4R434 MPC1-207ENST00000621685 1192 ntTSL 5 BASIC18.34■□□□□ 0.53
TMEM56-RWDD3S4R434 AC092053.2-201ENST00000640557 1818 ntBASIC18.34■□□□□ 0.53
TMEM56-RWDD3S4R434 SLC18A3-201ENST00000374115 2420 ntAPPRIS P1 BASIC18.34■□□□□ 0.53
TMEM56-RWDD3S4R434 USP48-205ENST00000421625 2818 ntTSL 2 BASIC18.34■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 63 ms