Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 EDC4-201ENST00000358933 4800 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
ZNF540Q8NDQ6 P2RX4-211ENST00000543171 1777 ntTSL 5 BASIC20.73■□□□□ 0.91
ZNF540Q8NDQ6 LY6H-201ENST00000342752 951 ntAPPRIS ALT2 TSL 1 (best) BASIC20.73■□□□□ 0.91
ZNF540Q8NDQ6 KRTAP5-5-201ENST00000399676 933 ntAPPRIS P1 BASIC20.73■□□□□ 0.91
ZNF540Q8NDQ6 LY6H-202ENST00000414417 1056 ntAPPRIS ALT2 TSL 1 (best) BASIC20.73■□□□□ 0.91
ZNF540Q8NDQ6 LY6H-203ENST00000430474 925 ntAPPRIS P3 TSL 3 BASIC20.73■□□□□ 0.91
ZNF540Q8NDQ6 LYSMD2-202ENST00000454181 1228 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
ZNF540Q8NDQ6 VGLL3-201ENST00000383698 2475 ntAPPRIS ALT2 TSL 1 (best) BASIC20.73■□□□□ 0.91
ZNF540Q8NDQ6 SLC35A3-204ENST00000427993 2062 ntAPPRIS P1 TSL 5 BASIC20.73■□□□□ 0.91
ZNF540Q8NDQ6 DPH1-203ENST00000570477 1747 ntAPPRIS ALT2 TSL 2 BASIC20.73■□□□□ 0.91
ZNF540Q8NDQ6 RILP-201ENST00000301336 1771 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
ZNF540Q8NDQ6 DENND4B-201ENST00000361217 5706 ntAPPRIS P2 TSL 1 (best) BASIC20.72■□□□□ 0.91
ZNF540Q8NDQ6 RAPH1-210ENST00000453034 2394 ntAPPRIS ALT2 TSL 1 (best) BASIC20.72■□□□□ 0.91
ZNF540Q8NDQ6 LINC01140-202ENST00000467438 2375 ntTSL 2 BASIC20.72■□□□□ 0.91
ZNF540Q8NDQ6 RANBP10-202ENST00000448631 2232 ntTSL 2 BASIC20.72■□□□□ 0.91
ZNF540Q8NDQ6 DUX4L18-201ENST00000553347 1267 ntBASIC20.72■□□□□ 0.91
ZNF540Q8NDQ6 TMEM120A-214ENST00000493111 1456 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
ZNF540Q8NDQ6 LRRC34-206ENST00000522526 1899 ntAPPRIS P3 TSL 1 (best) BASIC20.72■□□□□ 0.91
ZNF540Q8NDQ6 ITGB1BP1-203ENST00000359712 2126 ntTSL 2 BASIC20.72■□□□□ 0.91
ZNF540Q8NDQ6 PGF-206ENST00000555567 1927 ntAPPRIS P3 TSL 1 (best) BASIC20.72■□□□□ 0.91
ZNF540Q8NDQ6 PRRX2-201ENST00000372469 1311 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
ZNF540Q8NDQ6 CTGF-201ENST00000367976 2339 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
ZNF540Q8NDQ6 ZNF316-201ENST00000382252 5392 ntAPPRIS P1 TSL 5 BASIC20.71■□□□□ 0.91
ZNF540Q8NDQ6 DAZAP1-211ENST00000592522 2157 ntAPPRIS ALT1 TSL 5 BASIC20.71■□□□□ 0.91
ZNF540Q8NDQ6 PTPA-210ENST00000414510 1153 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
ZNF540Q8NDQ6 AC138647.1-201ENST00000427937 648 ntAPPRIS P1 TSL 5 BASIC20.71■□□□□ 0.91
ZNF540Q8NDQ6 WDR38-203ENST00000618744 1270 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
ZNF540Q8NDQ6 AC074183.2-201ENST00000623112 922 ntBASIC20.71■□□□□ 0.91
ZNF540Q8NDQ6 UPF3A-202ENST00000375299 2387 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
ZNF540Q8NDQ6 MEGF6-202ENST00000356575 5455 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
ZNF540Q8NDQ6 SLC18A3-201ENST00000374115 2420 ntAPPRIS P1 BASIC20.7■□□□□ 0.91
ZNF540Q8NDQ6 SLC35A2-201ENST00000247138 1672 ntAPPRIS P3 TSL 1 (best) BASIC20.7■□□□□ 0.91
ZNF540Q8NDQ6 MBLAC1-201ENST00000398075 1502 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
ZNF540Q8NDQ6 TRIM28-201ENST00000253024 2960 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
ZNF540Q8NDQ6 ERFE-207ENST00000546354 1065 ntAPPRIS P2 TSL 1 (best) BASIC20.7■□□□□ 0.9
ZNF540Q8NDQ6 RAP2CP1-202ENST00000605179 643 ntBASIC20.7■□□□□ 0.9
ZNF540Q8NDQ6 PIP5KL1-202ENST00000388747 2198 ntAPPRIS P1 TSL 5 BASIC20.7■□□□□ 0.9
ZNF540Q8NDQ6 H2AFY2-201ENST00000373255 1980 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
ZNF540Q8NDQ6 IQCJ-SCHIP1-202ENST00000460298 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
ZNF540Q8NDQ6 TSPY4-202ENST00000426950 1179 ntAPPRIS P5 TSL 5 BASIC20.69■□□□□ 0.9
ZNF540Q8NDQ6 HYI-210ENST00000486909 905 ntTSL 5 BASIC20.69■□□□□ 0.9
ZNF540Q8NDQ6 UBE2E3-213ENST00000602959 909 ntAPPRIS P1 TSL 5 BASIC20.69■□□□□ 0.9
ZNF540Q8NDQ6 C1orf232-201ENST00000634842 643 ntAPPRIS P5 TSL 5 BASIC20.69■□□□□ 0.9
ZNF540Q8NDQ6 TMEM9B-205ENST00000534025 2083 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
ZNF540Q8NDQ6 SCLY-201ENST00000254663 2562 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
ZNF540Q8NDQ6 GPR27-201ENST00000304411 2447 ntAPPRIS P1 BASIC20.68■□□□□ 0.9
ZNF540Q8NDQ6 KCNK12-201ENST00000327876 6227 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
ZNF540Q8NDQ6 COPRS-201ENST00000302362 968 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
ZNF540Q8NDQ6 AC008105.2-203ENST00000591361 550 ntTSL 4 BASIC20.68■□□□□ 0.9
ZNF540Q8NDQ6 BHLHE23-202ENST00000612929 1109 ntBASIC20.68■□□□□ 0.9
ZNF540Q8NDQ6 TBC1D12-201ENST00000225235 5272 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
ZNF540Q8NDQ6 SLC35A2-209ENST00000452555 1563 ntTSL 2 BASIC20.68■□□□□ 0.9
ZNF540Q8NDQ6 CSNK1G3-207ENST00000512718 1569 ntTSL 2 BASIC20.68■□□□□ 0.9
ZNF540Q8NDQ6 LTB4R-201ENST00000345363 1616 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
ZNF540Q8NDQ6 CTF1-201ENST00000279804 1664 ntAPPRIS P3 TSL 1 (best) BASIC20.67■□□□□ 0.9
ZNF540Q8NDQ6 DPF1-217ENST00000614244 2356 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
ZNF540Q8NDQ6 FAM136A-201ENST00000037869 1810 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
ZNF540Q8NDQ6 KCNQ4-204ENST00000509682 1926 ntAPPRIS ALT2 TSL 5 BASIC20.67■□□□□ 0.9
ZNF540Q8NDQ6 DIXDC1-205ENST00000529225 1945 ntTSL 5 BASIC20.67■□□□□ 0.9
ZNF540Q8NDQ6 RARRES2P1-201ENST00000474487 481 ntBASIC20.67■□□□□ 0.9
ZNF540Q8NDQ6 AC018755.3-202ENST00000596210 929 ntBASIC20.67■□□□□ 0.9
ZNF540Q8NDQ6 LTK-201ENST00000263800 3046 ntAPPRIS P4 TSL 1 (best) BASIC20.67■□□□□ 0.9
ZNF540Q8NDQ6 ROGDI-201ENST00000322048 1735 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
ZNF540Q8NDQ6 MYBL1-201ENST00000517885 1714 ntTSL 5 BASIC20.67■□□□□ 0.9
ZNF540Q8NDQ6 ARHGEF7-202ENST00000317133 4361 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
ZNF540Q8NDQ6 GRK4-206ENST00000504933 1971 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
ZNF540Q8NDQ6 FBRS-202ENST00000356166 5200 ntTSL 5 BASIC20.66■□□□□ 0.9
ZNF540Q8NDQ6 ALKAL1-201ENST00000358543 1217 ntAPPRIS P2 TSL 1 (best) BASIC20.66■□□□□ 0.9
ZNF540Q8NDQ6 PYY2-202ENST00000441253 1076 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
ZNF540Q8NDQ6 FAHD1-204ENST00000615972 757 ntTSL 5 BASIC20.66■□□□□ 0.9
ZNF540Q8NDQ6 WDR38-202ENST00000613760 1323 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
ZNF540Q8NDQ6 PAPOLA-225ENST00000557471 1421 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
ZNF540Q8NDQ6 NPAS1-202ENST00000449844 2043 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
ZNF540Q8NDQ6 KHDRBS2-201ENST00000281156 2332 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
ZNF540Q8NDQ6 MTCL1-201ENST00000306329 5718 ntAPPRIS ALT2 TSL 5 BASIC20.66■□□□□ 0.9
ZNF540Q8NDQ6 CPNE2-201ENST00000290776 2645 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
ZNF540Q8NDQ6 PPT2-244ENST00000324816 2053 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
ZNF540Q8NDQ6 MSL1-203ENST00000577454 2081 ntTSL 2 BASIC20.65■□□□□ 0.9
ZNF540Q8NDQ6 GALNT8-202ENST00000433855 5977 ntTSL 2 BASIC20.65■□□□□ 0.9
ZNF540Q8NDQ6 MSRB1-206ENST00000622125 1363 ntAPPRIS ALT1 TSL 5 BASIC20.65■□□□□ 0.9
ZNF540Q8NDQ6 DUX4L9-201ENST00000449051 1259 ntBASIC20.65■□□□□ 0.9
ZNF540Q8NDQ6 AC104002.3-202ENST00000557170 1100 ntTSL 3 BASIC20.65■□□□□ 0.9
ZNF540Q8NDQ6 SEC11C-204ENST00000587834 1202 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
ZNF540Q8NDQ6 BAZ1A-202ENST00000360310 6010 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
ZNF540Q8NDQ6 ZYX-201ENST00000322764 2493 ntAPPRIS P2 TSL 1 (best) BASIC20.65■□□□□ 0.9
ZNF540Q8NDQ6 SLC35F5-203ENST00000409342 2284 ntTSL 2 BASIC20.65■□□□□ 0.9
ZNF540Q8NDQ6 RASGRP2-210ENST00000394430 2174 ntTSL 2 BASIC20.65■□□□□ 0.9
ZNF540Q8NDQ6 ORAI1-202ENST00000617316 2138 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
ZNF540Q8NDQ6 EI24-213ENST00000618552 1747 ntTSL 5 BASIC20.64■□□□□ 0.9
ZNF540Q8NDQ6 TMEM121B-201ENST00000331437 4954 ntAPPRIS P3 BASIC20.64■□□□□ 0.9
ZNF540Q8NDQ6 CPSF4-207ENST00000451876 1644 ntTSL 5 BASIC20.64■□□□□ 0.9
ZNF540Q8NDQ6 GRIK4-205ENST00000527524 5861 ntAPPRIS P1 TSL 2 BASIC20.64■□□□□ 0.9
ZNF540Q8NDQ6 VDAC2-203ENST00000332211 1557 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
ZNF540Q8NDQ6 SKI-201ENST00000378536 5613 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
ZNF540Q8NDQ6 COQ2-201ENST00000311461 1464 ntAPPRIS ALT2 TSL 5 BASIC20.64■□□□□ 0.89
ZNF540Q8NDQ6 DNAJB11-202ENST00000439351 2398 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
ZNF540Q8NDQ6 MAP3K3-201ENST00000361357 4818 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
ZNF540Q8NDQ6 QDPR-202ENST00000428702 1278 ntTSL 2 BASIC20.64■□□□□ 0.89
ZNF540Q8NDQ6 ILDR2-208ENST00000529387 1238 ntTSL 5 BASIC20.64■□□□□ 0.89
ZNF540Q8NDQ6 MIR6765-201ENST00000614092 87 ntBASIC20.64■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 48.8 ms