RNA–Protein interactions for RNA: ENST00000375299.7

UPF3A-202, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF3A, Length 2,387 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-202ENST00000375299 NISCHQ9Y2I1 1504 aa42.68■■■■■ 4.42
UPF3A-202ENST00000375299 SHROOM4Q9ULL8 1493 aa36.38■■■■□ 3.41
UPF3A-202ENST00000375299 CCDC180Q9P1Z9 1646 aa36.38■■■■□ 3.41
UPF3A-202ENST00000375299 ZCCHC6Q5VYS8 1495 aaKnown RBP36.11■■■■□ 3.37
UPF3A-202ENST00000375299 SUPT5HO00267 1087 aaKnown RBP35.95■■■■□ 3.35
UPF3A-202ENST00000375299 MYO15BQ96JP2 1530 aa35.39■■■■□ 3.26
UPF3A-202ENST00000375299 HRCP23327 699 aa35.31■■■■□ 3.24
UPF3A-202ENST00000375299 CHIC1Q5VXU3 224 aa35.3■■■■□ 3.24
UPF3A-202ENST00000375299 DCAF8L2P0C7V8 631 aa35.2■■■■□ 3.22
UPF3A-202ENST00000375299 DCAF1Q9Y4B6 1507 aa35.1■■■■□ 3.21
UPF3A-202ENST00000375299 PCGF6Q9BYE7 350 aa34.81■■■■□ 3.16
UPF3A-202ENST00000375299 PPARGC1BQ86YN6 1023 aaKnown RBP34.42■■■■□ 3.1
UPF3A-202ENST00000375299 LOC105371045A0A1W2PR82 267 aa34.23■■■■□ 3.07
UPF3A-202ENST00000375299 ABCC9O60706 1549 aa34.07■■■■□ 3.04
UPF3A-202ENST00000375299 TRIM26Q12899 539 aaPredicted RBP34.05■■■■□ 3.04
UPF3A-202ENST00000375299 SCRIBQ14160 1630 aa33.98■■■■□ 3.03
UPF3A-202ENST00000375299 RSF1Q96T23 1441 aaPredicted RBP33.73■■■□□ 2.99
UPF3A-202ENST00000375299 NACADO15069 1562 aa33.62■■■□□ 2.97
UPF3A-202ENST00000375299 ZEB1P37275 1124 aaPredicted RBP33.62■■■□□ 2.97
UPF3A-202ENST00000375299 TRIM41Q8WV44 630 aa33.46■■■□□ 2.95
UPF3A-202ENST00000375299 RB1CC1Q8TDY2 1594 aa33.44■■■□□ 2.94
UPF3A-202ENST00000375299 CECR2Q9BXF3 1484 aa33.24■■■□□ 2.91
UPF3A-202ENST00000375299 FAM9AQ8IZU1 332 aaPredicted RBP33.19■■■□□ 2.9
UPF3A-202ENST00000375299 MROH2BQ7Z745 1585 aa33.15■■■□□ 2.9
UPF3A-202ENST00000375299 PELP1Q8IZL8 1130 aaKnown RBP33.05■■■□□ 2.88
UPF3A-202ENST00000375299 WIZO95785 1651 aa32.97■■■□□ 2.87
UPF3A-202ENST00000375299 SCAF1Q9H7N4 1312 aaKnown RBP32.91■■■□□ 2.86
UPF3A-202ENST00000375299 EHMT2Q96KQ7 1210 aa32.86■■■□□ 2.85
UPF3A-202ENST00000375299 BAZ1AQ9NRL2 1556 aaPredicted RBP32.81■■■□□ 2.84
UPF3A-202ENST00000375299 EIF4G1Q04637 1599 aaKnown RBP32.65■■■□□ 2.82
UPF3A-202ENST00000375299 UNC13AQ9UPW8 1703 aa32.58■■■□□ 2.81
UPF3A-202ENST00000375299 SMARCA4P51532 1647 aa32.52■■■□□ 2.8
UPF3A-202ENST00000375299 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP32.52■■■□□ 2.8
UPF3A-202ENST00000375299 TOP2AP11388 1531 aaKnown RBP32.5■■■□□ 2.79
UPF3A-202ENST00000375299 CCER1Q8TC90 406 aaPredicted RBP32.5■■■□□ 2.79
UPF3A-202ENST00000375299 ACIN1Q9UKV3 1341 aaKnown RBP32.41■■■□□ 2.78
UPF3A-202ENST00000375299 WRNQ14191 1432 aaPredicted RBP eCLIP32.36■■■□□ 2.77
UPF3A-202ENST00000375299 CCDC88BA6NC98 1476 aa32.33■■■□□ 2.77
UPF3A-202ENST00000375299 SMARCA2P51531 1590 aa32.31■■■□□ 2.76
UPF3A-202ENST00000375299 NEUROD1Q13562 356 aa32.27■■■□□ 2.76
UPF3A-202ENST00000375299 ABCC8Q09428 1581 aa32.23■■■□□ 2.75
UPF3A-202ENST00000375299 DIEXFQ68CQ4 756 aaKnown RBP32.22■■■□□ 2.75
UPF3A-202ENST00000375299 CEP162Q5TB80 1403 aa32.19■■■□□ 2.74
UPF3A-202ENST00000375299 BICRAQ9NZM4 1560 aa32.16■■■□□ 2.74
UPF3A-202ENST00000375299 CENPBP07199 599 aaPredicted RBP32.13■■■□□ 2.73
UPF3A-202ENST00000375299 TNIKQ9UKE5 1360 aa32.09■■■□□ 2.73
UPF3A-202ENST00000375299 PABPN1Q86U42 306 aaKnown RBP eCLIP32.07■■■□□ 2.72
UPF3A-202ENST00000375299 GTF3C3Q9Y5Q9 886 aa32.02■■■□□ 2.72
UPF3A-202ENST00000375299 SOGA1O94964 1423 aa32.01■■■□□ 2.71
UPF3A-202ENST00000375299 EEA1Q15075 1411 aa32■■■□□ 2.71
UPF3A-202ENST00000375299 TTBK1Q5TCY1 1321 aaPredicted RBP31.99■■■□□ 2.71
UPF3A-202ENST00000375299 PEG3Q9GZU2 1588 aa31.95■■■□□ 2.71
UPF3A-202ENST00000375299 CSRNP3Q8WYN3 585 aa31.86■■■□□ 2.69
UPF3A-202ENST00000375299 ZNF316A6NFI3 1004 aaPredicted RBP31.84■■■□□ 2.69
UPF3A-202ENST00000375299 RUSC2Q8N2Y8 1516 aa31.83■■■□□ 2.69
UPF3A-202ENST00000375299 GOLGA3Q08378 1498 aa31.82■■■□□ 2.69
UPF3A-202ENST00000375299 UBTFP17480 764 aaKnown RBP31.78■■■□□ 2.68
UPF3A-202ENST00000375299 ATAD2BQ9ULI0 1458 aa31.68■■■□□ 2.66
UPF3A-202ENST00000375299 KIF21BO75037 1637 aa31.59■■■□□ 2.65
UPF3A-202ENST00000375299 MYT1Q01538 1121 aa31.58■■■□□ 2.65
UPF3A-202ENST00000375299 BAZ1BQ9UIG0 1483 aaKnown RBP31.58■■■□□ 2.65
UPF3A-202ENST00000375299 CEP164Q9UPV0 1460 aa31.57■■■□□ 2.64
UPF3A-202ENST00000375299 SYNJ1O43426 1573 aa31.54■■■□□ 2.64
UPF3A-202ENST00000375299 YTHDC1Q96MU7 727 aaKnown RBP31.46■■■□□ 2.63
UPF3A-202ENST00000375299 CLIP1P30622 1438 aa31.45■■■□□ 2.62
UPF3A-202ENST00000375299 HNRNPUL2Q1KMD3 747 aaKnown RBP31.44■■■□□ 2.62
UPF3A-202ENST00000375299 MIER1Q8N108 512 aa31.43■■■□□ 2.62
UPF3A-202ENST00000375299 VPS8Q8N3P4 1428 aa31.41■■■□□ 2.62
UPF3A-202ENST00000375299 APLP2Q06481 763 aa31.22■■■□□ 2.59
UPF3A-202ENST00000375299 RAPGEF2Q9Y4G8 1499 aa31.22■■■□□ 2.59
UPF3A-202ENST00000375299 TOP2BQ02880 1626 aa31.2■■■□□ 2.58
UPF3A-202ENST00000375299 HMGXB3Q12766 1538 aa31.11■■■□□ 2.57
UPF3A-202ENST00000375299 BIVM-ERCC5R4GMW8 1640 aa31.1■■■□□ 2.57
UPF3A-202ENST00000375299 NCAPD3P42695 1498 aa31.1■■■□□ 2.57
UPF3A-202ENST00000375299 CLSPNQ9HAW4 1339 aa31.09■■■□□ 2.57
UPF3A-202ENST00000375299 DHX57Q6P158 1386 aaKnown RBP31■■■□□ 2.55
UPF3A-202ENST00000375299 ERICH3Q5RHP9 1530 aa30.96■■■□□ 2.55
UPF3A-202ENST00000375299 RANGAP1P46060 587 aaPredicted RBP30.94■■■□□ 2.54
UPF3A-202ENST00000375299 ARAP1Q96P48 1450 aa30.9■■■□□ 2.54
UPF3A-202ENST00000375299 CUX1P39880 1505 aa30.88■■■□□ 2.53
UPF3A-202ENST00000375299 PRXQ9BXM0 1461 aa30.86■■■□□ 2.53
UPF3A-202ENST00000375299 CFTRP13569 1480 aa30.83■■■□□ 2.53
UPF3A-202ENST00000375299 RRBP1Q9P2E9 1410 aaKnown RBP30.79■■■□□ 2.52
UPF3A-202ENST00000375299 KANK4Q5T7N3 995 aaPredicted RBP30.74■■■□□ 2.51
UPF3A-202ENST00000375299 CUX2O14529 1486 aa30.74■■■□□ 2.51
UPF3A-202ENST00000375299 SUPT16HQ9Y5B9 1047 aaKnown RBP30.72■■■□□ 2.51
UPF3A-202ENST00000375299 KIF27Q86VH2 1401 aa30.71■■■□□ 2.51
UPF3A-202ENST00000375299 PRDM2Q13029 1718 aa30.63■■■□□ 2.49
UPF3A-202ENST00000375299 CCNB3Q8WWL7 1395 aa30.58■■■□□ 2.49
UPF3A-202ENST00000375299 ARHGAP35Q9NRY4 1499 aa30.52■■■□□ 2.48
UPF3A-202ENST00000375299 CADPSQ9ULU8 1353 aa30.47■■■□□ 2.47
UPF3A-202ENST00000375299 MAPKBP1O60336 1514 aa30.43■■■□□ 2.46
UPF3A-202ENST00000375299 RAB3GAP2Q9H2M9 1393 aa30.39■■■□□ 2.46
UPF3A-202ENST00000375299 IGF1RP08069 1367 aa30.38■■■□□ 2.45
UPF3A-202ENST00000375299 TSHZ2Q9NRE2 1034 aa30.38■■■□□ 2.45
UPF3A-202ENST00000375299 ITGAEP38570 1179 aa30.35■■■□□ 2.45
UPF3A-202ENST00000375299 TIAM1Q13009 1591 aa30.34■■■□□ 2.45
UPF3A-202ENST00000375299 MAP3K1Q13233 1512 aa30.34■■■□□ 2.45
UPF3A-202ENST00000375299 FGD5Q6ZNL6 1462 aa30.32■■■□□ 2.44
UPF3A-202ENST00000375299 CC2D2AQ9P2K1 1620 aa30.3■■■□□ 2.44
Retrieved 100 of 20,778 RNA–protein pairs in 7.3 ms