Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 LOR-201ENST00000368742 1230 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
ZNF540Q8NDQ6 AC007029.1-201ENST00000604183 313 ntBASIC20.96■□□□□ 0.95
ZNF540Q8NDQ6 TBX1-202ENST00000332710 2084 ntAPPRIS P4 TSL 1 (best) BASIC20.96■□□□□ 0.95
ZNF540Q8NDQ6 CHST6-202ENST00000390664 2093 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
ZNF540Q8NDQ6 ADARB2-202ENST00000381310 1810 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
ZNF540Q8NDQ6 FRAT1-201ENST00000371021 2649 ntAPPRIS P1 BASIC20.96■□□□□ 0.95
ZNF540Q8NDQ6 FAM171A2-201ENST00000293443 3160 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
ZNF540Q8NDQ6 PRPSAP2-201ENST00000268835 1910 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
ZNF540Q8NDQ6 SLC9A3-AS1-207ENST00000607286 1357 ntTSL 5 BASIC20.96■□□□□ 0.95
ZNF540Q8NDQ6 TMEM200B-201ENST00000420504 2553 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.95
ZNF540Q8NDQ6 SMPD5-203ENST00000639008 1464 ntBASIC20.95■□□□□ 0.94
ZNF540Q8NDQ6 MEIOB-202ENST00000397344 1792 ntTSL 5 BASIC20.95■□□□□ 0.94
ZNF540Q8NDQ6 PLEKHA8-208ENST00000622102 2140 ntTSL 5 BASIC20.95■□□□□ 0.94
ZNF540Q8NDQ6 POLR2H-208ENST00000456318 1802 ntAPPRIS P1 TSL 5 BASIC20.95■□□□□ 0.94
ZNF540Q8NDQ6 PTRH1-205ENST00000423807 1570 ntTSL 2 BASIC20.95■□□□□ 0.94
ZNF540Q8NDQ6 AL157400.5-201ENST00000507624 621 ntBASIC20.95■□□□□ 0.94
ZNF540Q8NDQ6 PPIL6-203ENST00000440797 1693 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
ZNF540Q8NDQ6 HAS1-202ENST00000540069 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC20.95■□□□□ 0.94
ZNF540Q8NDQ6 RFNG-201ENST00000310496 1828 ntAPPRIS P1 TSL 2 BASIC20.94■□□□□ 0.94
ZNF540Q8NDQ6 P4HA3-202ENST00000427714 2248 ntTSL 2 BASIC20.94■□□□□ 0.94
ZNF540Q8NDQ6 SARDH-203ENST00000371868 2266 ntTSL 2 BASIC20.94■□□□□ 0.94
ZNF540Q8NDQ6 TDRKH-205ENST00000368827 2318 ntAPPRIS P2 TSL 1 (best) BASIC20.94■□□□□ 0.94
ZNF540Q8NDQ6 CDK2AP1-201ENST00000261692 1625 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
ZNF540Q8NDQ6 POLDIP2-201ENST00000540200 2121 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
ZNF540Q8NDQ6 RARA-AS1-201ENST00000581080 1790 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
ZNF540Q8NDQ6 YWHAH-201ENST00000248975 1825 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
ZNF540Q8NDQ6 FAM102B-201ENST00000370035 5600 ntAPPRIS P2 TSL 1 (best) BASIC20.94■□□□□ 0.94
ZNF540Q8NDQ6 LINC00526-201ENST00000581067 1875 ntBASIC20.94■□□□□ 0.94
ZNF540Q8NDQ6 MALT1-201ENST00000345724 2866 ntAPPRIS ALT2 TSL 1 (best) BASIC20.94■□□□□ 0.94
ZNF540Q8NDQ6 CREG1-201ENST00000370509 1974 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
ZNF540Q8NDQ6 GNA11-201ENST00000078429 4147 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
ZNF540Q8NDQ6 IGF2-AS-201ENST00000381361 2063 ntTSL 2 BASIC20.93■□□□□ 0.94
ZNF540Q8NDQ6 SLC39A14-202ENST00000289952 2137 ntAPPRIS ALT2 TSL 2 BASIC20.93■□□□□ 0.94
ZNF540Q8NDQ6 CACYBP-201ENST00000367679 2766 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
ZNF540Q8NDQ6 CKB-201ENST00000348956 1709 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
ZNF540Q8NDQ6 TMED4-205ENST00000481238 1755 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
ZNF540Q8NDQ6 TMEM151B-202ENST00000451188 4895 ntAPPRIS P2 TSL 5 BASIC20.93■□□□□ 0.94
ZNF540Q8NDQ6 KRT18P60-201ENST00000312876 1297 ntBASIC20.93■□□□□ 0.94
ZNF540Q8NDQ6 QDPR-208ENST00000513615 1188 ntTSL 2 BASIC20.93■□□□□ 0.94
ZNF540Q8NDQ6 PITX3-202ENST00000539804 1187 ntAPPRIS P1 TSL 5 BASIC20.93■□□□□ 0.94
ZNF540Q8NDQ6 FAM222B-205ENST00000577682 549 ntTSL 4 BASIC20.93■□□□□ 0.94
ZNF540Q8NDQ6 ZGPAT-201ENST00000328969 1945 ntTSL 2 BASIC20.93■□□□□ 0.94
ZNF540Q8NDQ6 PRKACA-201ENST00000308677 2677 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
ZNF540Q8NDQ6 ANKHD1-204ENST00000394722 2035 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
ZNF540Q8NDQ6 ZNF843-201ENST00000315678 2137 ntAPPRIS P2 TSL 2 BASIC20.93■□□□□ 0.94
ZNF540Q8NDQ6 GRM6-201ENST00000231188 6143 ntAPPRIS P1 TSL 2 BASIC20.93■□□□□ 0.94
ZNF540Q8NDQ6 EFS-203ENST00000429593 2610 ntTSL 2 BASIC20.92■□□□□ 0.94
ZNF540Q8NDQ6 HAR1A-201ENST00000433161 1882 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
ZNF540Q8NDQ6 ATP5G2P3-201ENST00000429083 425 ntBASIC20.92■□□□□ 0.94
ZNF540Q8NDQ6 AC107214.1-201ENST00000457303 559 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
ZNF540Q8NDQ6 HOMER3-207ENST00000594794 903 ntTSL 5 BASIC20.92■□□□□ 0.94
ZNF540Q8NDQ6 HABP4-201ENST00000375249 2615 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
ZNF540Q8NDQ6 ITPKC-201ENST00000263370 3385 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
ZNF540Q8NDQ6 GNG4-203ENST00000391854 5104 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
ZNF540Q8NDQ6 LRP5-201ENST00000294304 5159 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
ZNF540Q8NDQ6 KLC3-201ENST00000391946 1780 ntAPPRIS P2 TSL 1 (best) BASIC20.92■□□□□ 0.94
ZNF540Q8NDQ6 TIGD5-201ENST00000504548 5390 ntAPPRIS P1 BASIC20.92■□□□□ 0.94
ZNF540Q8NDQ6 ANOS2P-203ENST00000472227 1816 ntBASIC20.92■□□□□ 0.94
ZNF540Q8NDQ6 HRK-201ENST00000257572 5789 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
ZNF540Q8NDQ6 PTX3-201ENST00000295927 1940 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
ZNF540Q8NDQ6 MMP24-201ENST00000246186 4414 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
ZNF540Q8NDQ6 TSEN54-201ENST00000333213 1944 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
ZNF540Q8NDQ6 ARHGEF9-204ENST00000374878 2217 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
ZNF540Q8NDQ6 ENHO-201ENST00000399775 1082 ntAPPRIS P1 TSL 2 BASIC20.91■□□□□ 0.94
ZNF540Q8NDQ6 ARL6IP4-208ENST00000439686 796 ntAPPRIS ALT2 TSL 3 BASIC20.91■□□□□ 0.94
ZNF540Q8NDQ6 TERT-206ENST00000508104 2486 ntTSL 5 BASIC20.91■□□□□ 0.94
ZNF540Q8NDQ6 RPL27A-206ENST00000530022 878 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
ZNF540Q8NDQ6 RAD51-208ENST00000532743 1515 ntTSL 2 BASIC20.91■□□□□ 0.94
ZNF540Q8NDQ6 HACD3-205ENST00000562901 1797 ntTSL 5 BASIC20.91■□□□□ 0.94
ZNF540Q8NDQ6 GUSBP5-202ENST00000510805 1989 ntBASIC20.9■□□□□ 0.94
ZNF540Q8NDQ6 OXLD1-201ENST00000374741 620 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
ZNF540Q8NDQ6 AC004987.1-201ENST00000428627 508 ntBASIC20.9■□□□□ 0.94
ZNF540Q8NDQ6 GFER-205ENST00000569451 517 ntTSL 5 BASIC20.9■□□□□ 0.94
ZNF540Q8NDQ6 AKT2-234ENST00000579047 2029 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
ZNF540Q8NDQ6 SHMT1-202ENST00000352886 2437 ntTSL 2 BASIC20.89■□□□□ 0.94
ZNF540Q8NDQ6 TRIM67-203ENST00000449018 2166 ntTSL 1 (best) BASIC20.89■□□□□ 0.94
ZNF540Q8NDQ6 PAXBP1-201ENST00000290178 2564 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
ZNF540Q8NDQ6 UBE2D2-205ENST00000505548 1113 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
ZNF540Q8NDQ6 SPATA2L-201ENST00000289805 2335 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
ZNF540Q8NDQ6 IRX4-201ENST00000231357 2221 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
ZNF540Q8NDQ6 ASPSCR1-201ENST00000306729 2123 ntAPPRIS ALT2 TSL 2 BASIC20.89■□□□□ 0.93
ZNF540Q8NDQ6 FOXO6-202ENST00000641094 1476 ntAPPRIS P1 BASIC20.88■□□□□ 0.93
ZNF540Q8NDQ6 FMR1-201ENST00000218200 4333 ntAPPRIS ALT2 TSL 1 (best) BASIC20.88■□□□□ 0.93
ZNF540Q8NDQ6 NELFCD-213ENST00000602795 2305 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
ZNF540Q8NDQ6 NIPA2-203ENST00000398013 2280 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
ZNF540Q8NDQ6 VGLL2-201ENST00000326274 2212 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
ZNF540Q8NDQ6 AC127496.7-201ENST00000625110 1798 ntBASIC20.88■□□□□ 0.93
ZNF540Q8NDQ6 PARD3-214ENST00000545693 5962 ntAPPRIS ALT2 TSL 1 (best) BASIC20.88■□□□□ 0.93
ZNF540Q8NDQ6 TTC36-201ENST00000302783 874 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
ZNF540Q8NDQ6 MPC1-201ENST00000341756 976 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
ZNF540Q8NDQ6 FLVCR1-AS1-203ENST00000426161 892 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
ZNF540Q8NDQ6 RAB4B-203ENST00000594800 1173 ntAPPRIS P1 TSL 5 BASIC20.88■□□□□ 0.93
ZNF540Q8NDQ6 KLF16-204ENST00000617223 1133 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
ZNF540Q8NDQ6 AC133552.2-201ENST00000619106 1032 ntBASIC20.88■□□□□ 0.93
ZNF540Q8NDQ6 MPC1-206ENST00000621630 977 ntAPPRIS ALT1 TSL 5 BASIC20.88■□□□□ 0.93
ZNF540Q8NDQ6 MPC1-207ENST00000621685 1192 ntTSL 5 BASIC20.88■□□□□ 0.93
ZNF540Q8NDQ6 ZNF354A-201ENST00000335815 2484 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
ZNF540Q8NDQ6 PNCK-204ENST00000370150 1612 ntAPPRIS P1 TSL 5 BASIC20.88■□□□□ 0.93
ZNF540Q8NDQ6 AOC3-207ENST00000617500 2392 ntTSL 4 BASIC20.88■□□□□ 0.93
ZNF540Q8NDQ6 CCNYL1-202ENST00000339882 2619 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 19.6 ms