Protein–RNA interactions for Protein: P23396

RPS3, 40S ribosomal protein S3, humanhuman

Known RBP eCLIP

Length 243 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPS3P23396 HOXB4-201ENST00000332503 3757 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.085e-7■□□□□ 8.4
RPS3P23396 TOP3B-206ENST00000436282 2890 ntTSL 214.44□□□□□ -0.15e-7■□□□□ 8.4
RPS3P23396 TOP3B-201ENST00000357179 2863 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.155e-7■□□□□ 8.4
RPS3P23396 ILF3-221ENST00000591649 2579 ntTSL 213.73□□□□□ -0.215e-7■□□□□ 8.4
RPS3P23396 TOP3B-214ENST00000457270 2956 ntTSL 513.61□□□□□ -0.235e-7■□□□□ 8.4
RPS3P23396 SLC25A39-213ENST00000591006 2217 ntTSL 213.24□□□□□ -0.295e-7■□□□□ 8.4
RPS3P23396 TOP3B-213ENST00000457179 3061 ntTSL 513□□□□□ -0.335e-7■□□□□ 8.4
RPS3P23396 DDX39B-203ENST00000417023 561 ntTSL 512.62□□□□□ -0.391e-11■□□□□ 8.4
RPS3P23396 TOP3B-202ENST00000398793 3107 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.45e-7■□□□□ 8.4
RPS3P23396 TOP3B-210ENST00000444502 4163 ntTSL 210.14□□□□□ -0.795e-7■□□□□ 8.4
RPS3P23396 ILF3-205ENST00000586544 3859 ntTSL 1 (best)9.81□□□□□ -0.845e-7■□□□□ 8.4
RPS3P23396 DNAJC6-202ENST00000371069 5365 ntAPPRIS P4 TSL 1 (best) BASIC9.23□□□□□ -0.935e-7■□□□□ 8.4
RPS3P23396 DNAJC6-201ENST00000263441 5916 ntAPPRIS ALT2 TSL 2 BASIC7.73□□□□□ -1.175e-7■□□□□ 8.4
RPS3P23396 DNAJC6-203ENST00000395325 5743 ntTSL 1 (best) BASIC6.78□□□□□ -1.325e-7■□□□□ 8.4
RPS3P23396 HOXB3-213ENST00000552000 466 ntTSL 34.94□□□□□ -1.625e-7■□□□□ 8.4
RPS3P23396 LMNB2-205ENST00000532465 769 ntTSL 318.08■□□□□ 0.481e-11■□□□□ 8.4
RPS3P23396 LMNB2-203ENST00000490554 689 ntTSL 214.7□□□□□ -0.061e-11■□□□□ 8.4
RPS3P23396 FADS2-214ENST00000543584 354 ntTSL 310.52□□□□□ -0.731e-11■□□□□ 8.4
RPS3P23396 YWHAE-202ENST00000466227 1377 ntTSL 59.57□□□□□ -0.885e-7■□□□□ 8.4
RPS3P23396 YWHAE-206ENST00000496706 732 ntTSL 31.78□□□□□ -2.125e-7■□□□□ 8.4
RPS3P23396 CARS-206ENST00000465240 658 ntTSL 211.94□□□□□ -0.52e-8■□□□□ 8.4
RPS3P23396 CDT1-201ENST00000301019 3240 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.146e-9■□□□□ 8.4
RPS3P23396 MATR3-221ENST00000513121 573 ntTSL 218.46■□□□□ 0.551e-11■□□□□ 8.4
RPS3P23396 C21orf59-206ENST00000440966 1082 ntTSL 318.41■□□□□ 0.545e-7■□□□□ 8.4
RPS3P23396 C21orf59-201ENST00000290155 1692 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.485e-7■□□□□ 8.4
RPS3P23396 C21orf59-207ENST00000458138 863 ntTSL 317.6■□□□□ 0.415e-7■□□□□ 8.4
RPS3P23396 C21orf59-202ENST00000300260 1243 ntTSL 217.51■□□□□ 0.395e-7■□□□□ 8.4
RPS3P23396 MATR3-208ENST00000504045 1530 ntTSL 516.38■□□□□ 0.211e-11■□□□□ 8.4
RPS3P23396 MATR3-222ENST00000513678 444 ntTSL 216.25■□□□□ 0.191e-11■□□□□ 8.4
RPS3P23396 MATR3-220ENST00000512876 575 ntTSL 316.17■□□□□ 0.181e-11■□□□□ 8.4
RPS3P23396 MATR3-225ENST00000514528 532 ntTSL 416.03■□□□□ 0.161e-11■□□□□ 8.4
RPS3P23396 MATR3-235ENST00000506147 580 ntTSL 415.72■□□□□ 0.111e-11■□□□□ 8.4
RPS3P23396 CBX3-202ENST00000396386 1857 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.035e-7■□□□□ 8.4
RPS3P23396 CBX3-201ENST00000337620 2128 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.085e-7■□□□□ 8.4
RPS3P23396 MATR3-238ENST00000512107 579 ntTSL 414.31□□□□□ -0.121e-11■□□□□ 8.4
RPS3P23396 CBX3-203ENST00000409747 1717 ntTSL 1 (best) BASIC14.18□□□□□ -0.145e-7■□□□□ 8.4
RPS3P23396 C21orf59-203ENST00000382549 2503 ntTSL 1 (best) BASIC13.33□□□□□ -0.285e-7■□□□□ 8.4
RPS3P23396 MATR3-236ENST00000509644 750 ntTSL 312.27□□□□□ -0.451e-11■□□□□ 8.4
RPS3P23396 RPS3A-209ENST00000510993 762 ntTSL 512.26□□□□□ -0.455e-7■□□□□ 8.4
RPS3P23396 CBX5-205ENST00000552562 675 ntTSL 47.83□□□□□ -1.161e-11■□□□□ 8.4
RPS3P23396 CBX3-206ENST00000481057 860 ntTSL 24.97□□□□□ -1.615e-7■□□□□ 8.4
RPS3P23396 MATR3-212ENST00000507860 571 ntTSL 42.37□□□□□ -2.031e-11■□□□□ 8.4
RPS3P23396 MATR3-209ENST00000504311 423 ntTSL 31.87□□□□□ -2.111e-11■□□□□ 8.4
RPS3P23396 PSME2-218ENST00000630027 185 ntTSL 3 BASIC11.06□□□□□ -0.644e-7■□□□□ 8.4
RPS3P23396 PSME2-211ENST00000559613 300 ntTSL 31.89□□□□□ -2.114e-7■□□□□ 8.4
RPS3P23396 SLC5A6-212ENST00000461319 598 ntTSL 310.37□□□□□ -0.754e-10■□□□□ 8.4
RPS3P23396 ATXN2L-222ENST00000567024 525 ntTSL 317.06■□□□□ 0.325e-32■□□□□ 8.4
RPS3P23396 MCRIP1-210ENST00000576431 577 ntTSL 5 BASIC22.79■■□□□ 1.244e-8■□□□□ 8.4
RPS3P23396 MCRIP1-202ENST00000457257 942 ntTSL 3 BASIC22.62■■□□□ 1.214e-8■□□□□ 8.4
RPS3P23396 MCRIP1-209ENST00000575090 752 ntTSL 321.86■■□□□ 1.094e-8■□□□□ 8.4
RPS3P23396 ARL5A-205ENST00000487723 696 ntTSL 321.61■■□□□ 1.054e-8■□□□□ 8.4
RPS3P23396 MCRIP1-205ENST00000572645 1038 ntTSL 1 (best) BASIC21.31■■□□□ 14e-8■□□□□ 8.4
RPS3P23396 MCRIP1-204ENST00000570507 765 ntTSL 2 BASIC21.23■□□□□ 0.994e-8■□□□□ 8.4
RPS3P23396 MCRIP1-208ENST00000575061 618 ntTSL 5 BASIC21.23■□□□□ 0.994e-8■□□□□ 8.4
RPS3P23396 HNF4A-205ENST00000443598 1603 ntTSL 1 (best) BASIC20.65■□□□□ 0.94e-8■□□□□ 8.4
RPS3P23396 ARL5A-202ENST00000428992 747 ntTSL 2 BASIC20.02■□□□□ 0.84e-8■□□□□ 8.4
RPS3P23396 MCRIP1-203ENST00000538396 925 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.754e-8■□□□□ 8.4
RPS3P23396 FDXR-215ENST00000581969 568 ntTSL 419.68■□□□□ 0.744e-8■□□□□ 8.4
RPS3P23396 ARL5A-204ENST00000458140 1076 ntTSL 519.51■□□□□ 0.714e-8■□□□□ 8.4
RPS3P23396 FDXR-212ENST00000580492 553 ntTSL 519.39■□□□□ 0.694e-8■□□□□ 8.4
RPS3P23396 MCRIP1-201ENST00000455127 1209 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.674e-8■□□□□ 8.4
RPS3P23396 FDXR-207ENST00000577932 572 ntTSL 218.91■□□□□ 0.624e-8■□□□□ 8.4
RPS3P23396 FDXR-216ENST00000582710 846 ntTSL 518.73■□□□□ 0.594e-8■□□□□ 8.4
RPS3P23396 SUPT16H-203ENST00000555752 888 ntTSL 217.81■□□□□ 0.444e-8■□□□□ 8.4
RPS3P23396 ARL5A-201ENST00000295087 5326 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.424e-8■□□□□ 8.4
RPS3P23396 HNF4A-208ENST00000609795 1192 ntTSL 1 (best) BASIC17.63■□□□□ 0.414e-8■□□□□ 8.4
RPS3P23396 FDXR-211ENST00000579893 558 ntTSL 417.35■□□□□ 0.374e-8■□□□□ 8.4
RPS3P23396 MCRIP1-206ENST00000573478 1123 ntTSL 2 BASIC17.1■□□□□ 0.334e-8■□□□□ 8.4
RPS3P23396 FDXR-210ENST00000579543 558 ntTSL 417.07■□□□□ 0.324e-8■□□□□ 8.4
RPS3P23396 MCRIP1-211ENST00000576679 751 ntTSL 2 BASIC17.04■□□□□ 0.324e-8■□□□□ 8.4
RPS3P23396 FDXR-213ENST00000581219 567 ntTSL 416.34■□□□□ 0.214e-8■□□□□ 8.4
RPS3P23396 SUPT16H-205ENST00000556217 1027 ntTSL 214.67□□□□□ -0.064e-8■□□□□ 8.4
RPS3P23396 SUPT16H-208ENST00000557652 877 ntTSL 513.95□□□□□ -0.184e-8■□□□□ 8.4
RPS3P23396 MCRIP1-207ENST00000574190 2775 ntAPPRIS P1 TSL 2 BASIC13.6□□□□□ -0.234e-8■□□□□ 8.4
RPS3P23396 MCRIP1-212ENST00000576730 2979 ntAPPRIS P1 TSL 2 BASIC12.63□□□□□ -0.394e-8■□□□□ 8.4
RPS3P23396 AC068547.1-203ENST00000637559 1373 ntAPPRIS P5 TSL 5 BASIC9.26□□□□□ -0.934e-8■□□□□ 8.4
RPS3P23396 AC068547.1-202ENST00000637224 2827 ntAPPRIS ALT2 TSL 57.67□□□□□ -1.184e-8■□□□□ 8.4
RPS3P23396 SUPT16H-204ENST00000555943 915 ntTSL 2 BASIC7.47□□□□□ -1.214e-8■□□□□ 8.4
RPS3P23396 ARL5A-203ENST00000446896 1268 ntTSL 25.65□□□□□ -1.54e-8■□□□□ 8.4
RPS3P23396 AC068547.1-201ENST00000636024 1303 ntAPPRIS ALT2 TSL 55.35□□□□□ -1.554e-8■□□□□ 8.4
RPS3P23396 SUPT16H-206ENST00000556309 582 ntTSL 30.51□□□□□ -2.334e-8■□□□□ 8.4
RPS3P23396 LARS-214ENST00000512412 575 ntTSL 57.36□□□□□ -1.233e-6■□□□□ 8.4
RPS3P23396 HSPA9-211ENST00000512328 482 ntTSL 34.39□□□□□ -1.711e-6■□□□□ 8.4
RPS3P23396 PHF10-206ENST00000621772 1651 ntAPPRIS ALT2 TSL 1 (best) BASIC13.61□□□□□ -0.232e-10■□□□□ 8.4
RPS3P23396 YARS-204ENST00000470377 782 ntTSL 37.46□□□□□ -1.222e-7■□□□□ 8.3
RPS3P23396 FAT1-202ENST00000500085 2224 ntTSL 212.74□□□□□ -0.374e-10■□□□□ 8.3
RPS3P23396 FAT1-211ENST00000512772 1305 ntTSL 210.68□□□□□ -0.74e-10■□□□□ 8.3
RPS3P23396 LRRC75A-AS1-202ENST00000470491 1057 ntTSL 1 (best) BASIC21.26■□□□□ 0.998e-16■□□□□ 8.3
RPS3P23396 LRRC75A-AS1-218ENST00000578380 310 ntTSL 321.26■□□□□ 0.998e-16■□□□□ 8.3
RPS3P23396 LRRC75A-AS1-205ENST00000475953 1201 ntTSL 1 (best) BASIC19.01■□□□□ 0.638e-16■□□□□ 8.3
RPS3P23396 LRRC75A-AS1-224ENST00000581718 574 ntTSL 218.93■□□□□ 0.628e-16■□□□□ 8.3
RPS3P23396 LRRC75A-AS1-228ENST00000584141 564 ntTSL 217.55■□□□□ 0.48e-16■□□□□ 8.3
RPS3P23396 LRRC75A-AS1-229ENST00000584177 574 ntTSL 416.39■□□□□ 0.218e-16■□□□□ 8.3
RPS3P23396 LRRC75A-AS1-226ENST00000582911 879 ntTSL 5 BASIC13.8□□□□□ -0.28e-16■□□□□ 8.3
RPS3P23396 LRRC75A-AS1-217ENST00000497774 1662 ntTSL 513.14□□□□□ -0.318e-16■□□□□ 8.3
RPS3P23396 LRRC75A-AS1-214ENST00000487066 763 ntTSL 3 BASIC13.12□□□□□ -0.318e-16■□□□□ 8.3
RPS3P23396 LRRC75A-AS1-206ENST00000477249 891 ntTSL 512.4□□□□□ -0.428e-16■□□□□ 8.3
RPS3P23396 LRRC75A-AS1-219ENST00000578757 920 ntTSL 1 (best)12.4□□□□□ -0.428e-16■□□□□ 8.3
RPS3P23396 LRRC75A-AS1-227ENST00000583400 712 ntTSL 49.7□□□□□ -0.868e-16■□□□□ 8.3
RPS3P23396 LRRC75A-AS1-223ENST00000581361 843 ntTSL 1 (best) BASIC9.59□□□□□ -0.878e-16■□□□□ 8.3
Retrieved 100 of 24,271 protein–RNA pairs in 513.3 ms