RNA–Protein interactions for RNA: ENST00000512876.5

MATR3-220, Transcript of matrin 3, humanhuman

TSL 3

Gene MATR3, Length 575 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MATR3-220ENST00000512876 NISCHQ9Y2I1 1504 aa42.02■■■■■ 4.32
MATR3-220ENST00000512876 CCDC180Q9P1Z9 1646 aa37.63■■■■□ 3.61
MATR3-220ENST00000512876 ABCC9O60706 1549 aa37.31■■■■□ 3.56
MATR3-220ENST00000512876 RB1CC1Q8TDY2 1594 aa35.67■■■■□ 3.3
MATR3-220ENST00000512876 NACADO15069 1562 aa35.5■■■■□ 3.27
MATR3-220ENST00000512876 MYO15BQ96JP2 1530 aa35.16■■■■□ 3.22
MATR3-220ENST00000512876 DCAF8L2P0C7V8 631 aa35.14■■■■□ 3.22
MATR3-220ENST00000512876 ZCCHC6Q5VYS8 1495 aaKnown RBP34.91■■■■□ 3.18
MATR3-220ENST00000512876 UNC13AQ9UPW8 1703 aa34.84■■■■□ 3.17
MATR3-220ENST00000512876 DNAJC5BQ9UF47 199 aa34.79■■■■□ 3.16
MATR3-220ENST00000512876 DCAF1Q9Y4B6 1507 aa34.78■■■■□ 3.16
MATR3-220ENST00000512876 PABPN1Q86U42 306 aaKnown RBP eCLIP34.72■■■■□ 3.15
MATR3-220ENST00000512876 BICRAQ9NZM4 1560 aa34.66■■■■□ 3.14
MATR3-220ENST00000512876 SHROOM4Q9ULL8 1493 aa34.28■■■■□ 3.08
MATR3-220ENST00000512876 SCRIBQ14160 1630 aa34.22■■■■□ 3.07
MATR3-220ENST00000512876 EIF4G1Q04637 1599 aaKnown RBP33.77■■■■□ 3
MATR3-220ENST00000512876 CC2D2AQ9P2K1 1620 aa33.75■■■□□ 2.99
MATR3-220ENST00000512876 CECR2Q9BXF3 1484 aa33.62■■■□□ 2.97
MATR3-220ENST00000512876 NCAPD3P42695 1498 aa32.79■■■□□ 2.84
MATR3-220ENST00000512876 SMARCA4P51532 1647 aa32.73■■■□□ 2.83
MATR3-220ENST00000512876 ATAD2BQ9ULI0 1458 aa32.7■■■□□ 2.83
MATR3-220ENST00000512876 SMARCA2P51531 1590 aa32.62■■■□□ 2.81
MATR3-220ENST00000512876 BAZ1AQ9NRL2 1556 aaPredicted RBP32.6■■■□□ 2.81
MATR3-220ENST00000512876 HMGXB3Q12766 1538 aa32.59■■■□□ 2.81
MATR3-220ENST00000512876 PEG3Q9GZU2 1588 aa32.47■■■□□ 2.79
MATR3-220ENST00000512876 BAZ1BQ9UIG0 1483 aaKnown RBP32.37■■■□□ 2.77
MATR3-220ENST00000512876 MROH2BQ7Z745 1585 aa32.36■■■□□ 2.77
MATR3-220ENST00000512876 ERCC6Q03468 1493 aa32.18■■■□□ 2.74
MATR3-220ENST00000512876 NESP48681 1621 aa32.14■■■□□ 2.74
MATR3-220ENST00000512876 CUX2O14529 1486 aa32.13■■■□□ 2.73
MATR3-220ENST00000512876 LAMC3Q9Y6N6 1575 aa31.99■■■□□ 2.71
MATR3-220ENST00000512876 WIZO95785 1651 aa31.95■■■□□ 2.7
MATR3-220ENST00000512876 THOC2Q8NI27 1593 aaKnown RBP31.83■■■□□ 2.69
MATR3-220ENST00000512876 RSF1Q96T23 1441 aaPredicted RBP31.78■■■□□ 2.68
MATR3-220ENST00000512876 DNAJC5Q9H3Z4 198 aa31.78■■■□□ 2.68
MATR3-220ENST00000512876 PDS5BQ9NTI5 1447 aa31.76■■■□□ 2.68
MATR3-220ENST00000512876 CADPSQ9ULU8 1353 aa31.76■■■□□ 2.67
MATR3-220ENST00000512876 KIF21AQ7Z4S6 1674 aa31.73■■■□□ 2.67
MATR3-220ENST00000512876 TOP2AP11388 1531 aaKnown RBP31.62■■■□□ 2.65
MATR3-220ENST00000512876 MRC2Q9UBG0 1479 aa31.51■■■□□ 2.63
MATR3-220ENST00000512876 CFTRP13569 1480 aa31.48■■■□□ 2.63
MATR3-220ENST00000512876 WDR62O43379 1518 aa31.45■■■□□ 2.63
MATR3-220ENST00000512876 CEP164Q9UPV0 1460 aa31.41■■■□□ 2.62
MATR3-220ENST00000512876 FANCD2Q9BXW9 1451 aa31.4■■■□□ 2.62
MATR3-220ENST00000512876 CCDC88BA6NC98 1476 aa31.22■■■□□ 2.59
MATR3-220ENST00000512876 PRDM2Q13029 1718 aa31.15■■■□□ 2.58
MATR3-220ENST00000512876 URB2Q14146 1524 aaKnown RBP31.14■■■□□ 2.58
MATR3-220ENST00000512876 TOPBP1Q92547 1522 aa30.84■■■□□ 2.53
MATR3-220ENST00000512876 IFT140Q96RY7 1462 aa30.79■■■□□ 2.52
MATR3-220ENST00000512876 ABCC8Q09428 1581 aa30.79■■■□□ 2.52
MATR3-220ENST00000512876 DNMBPQ6XZF7 1577 aa30.76■■■□□ 2.52
MATR3-220ENST00000512876 ZNF608Q9ULD9 1512 aaPredicted RBP30.71■■■□□ 2.51
MATR3-220ENST00000512876 OSCARQ8IYS5 282 aa30.6■■■□□ 2.49
MATR3-220ENST00000512876 TARBP1Q13395 1621 aaKnown RBP30.58■■■□□ 2.49
MATR3-220ENST00000512876 EIF4G3O43432 1585 aaKnown RBP30.57■■■□□ 2.48
MATR3-220ENST00000512876 POLA1P09884 1462 aaPredicted RBP30.56■■■□□ 2.48
MATR3-220ENST00000512876 AQRO60306 1485 aaKnown RBP eCLIP30.43■■■□□ 2.464e-7■■■■□ 22.7
MATR3-220ENST00000512876 CUX1P39880 1505 aa30.4■■■□□ 2.46
MATR3-220ENST00000512876 RAD54L2Q9Y4B4 1467 aa30.39■■■□□ 2.46
MATR3-220ENST00000512876 SUPT5HO00267 1087 aaKnown RBP30.39■■■□□ 2.46
MATR3-220ENST00000512876 TRIM41Q8WV44 630 aa30.39■■■□□ 2.46
MATR3-220ENST00000512876 FGD5Q6ZNL6 1462 aa30.38■■■□□ 2.45
MATR3-220ENST00000512876 SOGA1O94964 1423 aa30.36■■■□□ 2.45
MATR3-220ENST00000512876 WDR97A6NE52 1622 aa30.31■■■□□ 2.44
MATR3-220ENST00000512876 TDRD9Q8NDG6 1382 aaKnown RBP30.26■■■□□ 2.43
MATR3-220ENST00000512876 CHD1O14646 1710 aa30.25■■■□□ 2.43
MATR3-220ENST00000512876 RIMBP3CA6NJZ7 1639 aa30.24■■■□□ 2.43
MATR3-220ENST00000512876 RIMBP3BA6NNM3 1639 aa30.24■■■□□ 2.43
MATR3-220ENST00000512876 RIMBP3Q9UFD9 1639 aa30.24■■■□□ 2.43
MATR3-220ENST00000512876 ARHGEF11O15085 1522 aa30.19■■■□□ 2.42
MATR3-220ENST00000512876 SNAPC4Q5SXM2 1469 aa30.15■■■□□ 2.42
MATR3-220ENST00000512876 MAGI1Q96QZ7 1491 aaPredicted RBP30.12■■■□□ 2.41
MATR3-220ENST00000512876 GRIN2BQ13224 1484 aa30.11■■■□□ 2.41
MATR3-220ENST00000512876 ABCA10Q8WWZ4 1543 aa30.08■■■□□ 2.41
MATR3-220ENST00000512876 FBLN2P98095 1184 aa30.07■■■□□ 2.4
MATR3-220ENST00000512876 GAPVD1Q14C86 1478 aa30.02■■■□□ 2.4
MATR3-220ENST00000512876 ABCA5Q8WWZ7 1642 aa30.02■■■□□ 2.4
MATR3-220ENST00000512876 SYNJ2O15056 1496 aa29.99■■■□□ 2.39
MATR3-220ENST00000512876 CLASP1Q7Z460 1538 aa29.99■■■□□ 2.39
MATR3-220ENST00000512876 BIVM-ERCC5R4GMW8 1640 aa29.99■■■□□ 2.39
MATR3-220ENST00000512876 PBRM1Q86U86 1689 aa29.98■■■□□ 2.39
MATR3-220ENST00000512876 TOP2BQ02880 1626 aa29.98■■■□□ 2.39
MATR3-220ENST00000512876 WRNQ14191 1432 aaPredicted RBP eCLIP29.96■■■□□ 2.396e-9■■■■■ 30.6
MATR3-220ENST00000512876 SYNJ1O43426 1573 aa29.94■■■□□ 2.38
MATR3-220ENST00000512876 CHMP7Q8WUX9 453 aaPredicted RBP29.94■■■□□ 2.38
MATR3-220ENST00000512876 ARAP1Q96P48 1450 aa29.92■■■□□ 2.38
MATR3-220ENST00000512876 CYB5RLQ6IPT4 315 aa29.84■■■□□ 2.37
MATR3-220ENST00000512876 ADAMTS12P58397 1594 aa29.77■■■□□ 2.36
MATR3-220ENST00000512876 GRIN2AQ12879 1464 aa29.74■■■□□ 2.35
MATR3-220ENST00000512876 ERICH3Q5RHP9 1530 aa29.7■■■□□ 2.34
MATR3-220ENST00000512876 FHAD1B1AJZ9 1412 aa29.67■■■□□ 2.34
MATR3-220ENST00000512876 NUP160Q12769 1436 aa29.66■■■□□ 2.34
MATR3-220ENST00000512876 CEP170Q5SW79 1584 aa29.62■■■□□ 2.33
MATR3-220ENST00000512876 SHROOM2Q13796 1616 aa29.5■■■□□ 2.31
MATR3-220ENST00000512876 ERCC6L2Q5T890 1561 aa29.49■■■□□ 2.31
MATR3-220ENST00000512876 TRHP20396 242 aaPredicted RBP29.39■■■□□ 2.3
MATR3-220ENST00000512876 KIF27Q86VH2 1401 aa29.37■■■□□ 2.29
MATR3-220ENST00000512876 RUSC2Q8N2Y8 1516 aa29.35■■■□□ 2.29
MATR3-220ENST00000512876 IGF1RP08069 1367 aa29.33■■■□□ 2.29
MATR3-220ENST00000512876 CUL7Q14999 1698 aa29.3■■■□□ 2.28
Retrieved 100 of 20,778 RNA–protein pairs in 69.1 ms