Protein–RNA interactions for Protein: Q96DI7

SNRNP40, U5 small nuclear ribonucleoprotein 40 kDa protein, humanhuman

Known RBP Predictions only

Length 357 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SNRNP40Q96DI7 TMEM9-201ENST00000367330 1959 ntAPPRIS P3 TSL 1 (best) BASIC20.94■□□□□ 0.94
SNRNP40Q96DI7 HSF4-225ENST00000584272 1549 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
SNRNP40Q96DI7 SAC3D1-201ENST00000398846 1566 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
SNRNP40Q96DI7 GSK3A-201ENST00000222330 2188 ntAPPRIS P2 TSL 1 (best) BASIC20.93■□□□□ 0.94
SNRNP40Q96DI7 NPHS2-202ENST00000367616 1670 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
SNRNP40Q96DI7 FXYD7-201ENST00000270310 712 ntAPPRIS P2 TSL 1 (best) BASIC20.93■□□□□ 0.94
SNRNP40Q96DI7 PPM1N-207ENST00000451287 1293 ntAPPRIS P1 TSL 5 BASIC20.93■□□□□ 0.94
SNRNP40Q96DI7 PRELID1-203ENST00000503216 1171 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
SNRNP40Q96DI7 SLC35A3-216ENST00000639221 1032 ntTSL 5 BASIC20.93■□□□□ 0.94
SNRNP40Q96DI7 ERN1-208ENST00000606895 2068 ntBASIC20.93■□□□□ 0.94
SNRNP40Q96DI7 SERINC5-203ENST00000509193 1441 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
SNRNP40Q96DI7 AUH-201ENST00000303617 1490 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
SNRNP40Q96DI7 MAPKAP1-207ENST00000394060 1586 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
SNRNP40Q96DI7 CLK2-203ENST00000368361 2166 ntAPPRIS ALT1 TSL 1 (best) BASIC20.92■□□□□ 0.94
SNRNP40Q96DI7 TMEM147-203ENST00000392205 767 ntTSL 2 BASIC20.92■□□□□ 0.94
SNRNP40Q96DI7 PTMA-205ENST00000410064 814 ntTSL 2 BASIC20.92■□□□□ 0.94
SNRNP40Q96DI7 YJEFN3-201ENST00000436027 878 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
SNRNP40Q96DI7 MAG-206ENST00000597035 542 ntTSL 4 BASIC20.92■□□□□ 0.94
SNRNP40Q96DI7 CENPH-201ENST00000283006 1389 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
SNRNP40Q96DI7 TWF2-201ENST00000305533 1718 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
SNRNP40Q96DI7 KAT8-202ENST00000448516 1789 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
SNRNP40Q96DI7 ZNF641-205ENST00000547026 1823 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
SNRNP40Q96DI7 HMCES-204ENST00000502878 1952 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
SNRNP40Q96DI7 HDGFL1-201ENST00000510882 2174 ntAPPRIS P1 BASIC20.92■□□□□ 0.94
SNRNP40Q96DI7 PYGO2-201ENST00000368456 1306 ntTSL 2 BASIC20.91■□□□□ 0.94
SNRNP40Q96DI7 CLPSL2-202ENST00000403376 405 ntAPPRIS P3 TSL 1 (best) BASIC20.91■□□□□ 0.94
SNRNP40Q96DI7 SDHAP1-204ENST00000427415 559 ntTSL 4 BASIC20.91■□□□□ 0.94
SNRNP40Q96DI7 HOMER3-205ENST00000542541 1607 ntAPPRIS P3 TSL 1 (best) BASIC20.91■□□□□ 0.94
SNRNP40Q96DI7 PRSS22-203ENST00000571228 1037 ntTSL 2 BASIC20.91■□□□□ 0.94
SNRNP40Q96DI7 CA15P2-201ENST00000611168 834 ntBASIC20.91■□□□□ 0.94
SNRNP40Q96DI7 HOOK2-201ENST00000264827 2603 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
SNRNP40Q96DI7 PSMG1-201ENST00000331573 2154 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
SNRNP40Q96DI7 ZDHHC16-207ENST00000393760 2014 ntAPPRIS P4 TSL 1 (best) BASIC20.9■□□□□ 0.94
SNRNP40Q96DI7 EVA1C-201ENST00000300255 1998 ntAPPRIS P3 TSL 1 (best) BASIC20.9■□□□□ 0.94
SNRNP40Q96DI7 RASA4CP-201ENST00000424092 1398 ntBASIC20.9■□□□□ 0.94
SNRNP40Q96DI7 REST-206ENST00000612429 1376 ntTSL 5 BASIC20.9■□□□□ 0.94
SNRNP40Q96DI7 REST-207ENST00000616975 1370 ntTSL 5 BASIC20.9■□□□□ 0.94
SNRNP40Q96DI7 HOXB3-201ENST00000311626 2642 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
SNRNP40Q96DI7 SERBP1P1-201ENST00000396021 1160 ntBASIC20.9■□□□□ 0.94
SNRNP40Q96DI7 SCO2-204ENST00000543927 1051 ntAPPRIS P1 TSL 2 BASIC20.9■□□□□ 0.94
SNRNP40Q96DI7 AC087623.3-201ENST00000607047 1098 ntBASIC20.9■□□□□ 0.94
SNRNP40Q96DI7 SYNGR3-206ENST00000618464 1213 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
SNRNP40Q96DI7 SIGMAR1-201ENST00000277010 1656 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
SNRNP40Q96DI7 AC012123.1-201ENST00000426194 1661 ntTSL 5 BASIC20.89■□□□□ 0.94
SNRNP40Q96DI7 SDS-201ENST00000257549 1606 ntAPPRIS P1 TSL 2 BASIC20.89■□□□□ 0.94
SNRNP40Q96DI7 RAB3IL1-202ENST00000394836 2284 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
SNRNP40Q96DI7 AIPL1-206ENST00000571740 1202 ntAPPRIS ALT2 TSL 1 (best) BASIC20.89■□□□□ 0.93
SNRNP40Q96DI7 P2RX4-203ENST00000359949 1836 ntTSL 5 BASIC20.89■□□□□ 0.93
SNRNP40Q96DI7 CHST13-201ENST00000319340 1789 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
SNRNP40Q96DI7 EPCAM-201ENST00000263735 1724 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
SNRNP40Q96DI7 SPEF1-201ENST00000379756 1580 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
SNRNP40Q96DI7 TANGO2-214ENST00000447208 2086 ntTSL 3 BASIC20.89■□□□□ 0.93
SNRNP40Q96DI7 TMEM55B-201ENST00000250489 1961 ntAPPRIS P3 TSL 1 (best) BASIC20.88■□□□□ 0.93
SNRNP40Q96DI7 CREB3L3-205ENST00000602257 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC20.88■□□□□ 0.93
SNRNP40Q96DI7 OSCAR-203ENST00000356532 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC20.88■□□□□ 0.93
SNRNP40Q96DI7 OSCAR-204ENST00000358375 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC20.88■□□□□ 0.93
SNRNP40Q96DI7 ECHDC1-203ENST00000368291 1354 ntTSL 2 BASIC20.88■□□□□ 0.93
SNRNP40Q96DI7 OSCAR-210ENST00000616447 1358 ntAPPRIS ALT2 TSL 5 BASIC20.88■□□□□ 0.93
SNRNP40Q96DI7 RPUSD3-206ENST00000433535 1178 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
SNRNP40Q96DI7 AL162430.1-201ENST00000480705 870 ntBASIC20.88■□□□□ 0.93
SNRNP40Q96DI7 PLD4-205ENST00000553861 667 ntTSL 2 BASIC20.88■□□□□ 0.93
SNRNP40Q96DI7 FAAH-201ENST00000243167 2094 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
SNRNP40Q96DI7 YRDC-201ENST00000373044 1826 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
SNRNP40Q96DI7 NKX6-3-201ENST00000518699 1352 ntAPPRIS P1 TSL 5 BASIC20.87■□□□□ 0.93
SNRNP40Q96DI7 AC099791.2-201ENST00000605725 427 ntBASIC20.87■□□□□ 0.93
SNRNP40Q96DI7 SLC12A5-217ENST00000626937 1224 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
SNRNP40Q96DI7 ZNF747-203ENST00000568028 1511 ntAPPRIS P1 TSL 2 BASIC20.87■□□□□ 0.93
SNRNP40Q96DI7 TMIE-201ENST00000326431 1824 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
SNRNP40Q96DI7 MROH6-211ENST00000534459 1789 ntAPPRIS ALT2 TSL 2 BASIC20.87■□□□□ 0.93
SNRNP40Q96DI7 ARL6IP4-210ENST00000453766 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
SNRNP40Q96DI7 DACT2-202ENST00000366796 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
SNRNP40Q96DI7 NKAIN3-202ENST00000523211 1988 ntAPPRIS P1 TSL 2 BASIC20.86■□□□□ 0.93
SNRNP40Q96DI7 ZKSCAN7-206ENST00000431636 1692 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
SNRNP40Q96DI7 NDEL1-202ENST00000380025 2181 ntTSL 5 BASIC20.86■□□□□ 0.93
SNRNP40Q96DI7 GLI3-203ENST00000437480 451 ntTSL 2 BASIC20.86■□□□□ 0.93
SNRNP40Q96DI7 WDR86-AS1-204ENST00000489632 751 ntTSL 3 BASIC20.86■□□□□ 0.93
SNRNP40Q96DI7 AC027682.1-201ENST00000562846 899 ntBASIC20.86■□□□□ 0.93
SNRNP40Q96DI7 AMZ2-219ENST00000612294 1498 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
SNRNP40Q96DI7 C19orf12-204ENST00000392276 1912 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
SNRNP40Q96DI7 B3GALT4-204ENST00000451237 1694 ntAPPRIS P1 BASIC20.86■□□□□ 0.93
SNRNP40Q96DI7 C1orf35-201ENST00000272139 1427 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
SNRNP40Q96DI7 KBTBD13-201ENST00000432196 1377 ntAPPRIS P1 BASIC20.85■□□□□ 0.93
SNRNP40Q96DI7 OAS3-205ENST00000548514 1392 ntTSL 2 BASIC20.85■□□□□ 0.93
SNRNP40Q96DI7 HADH-203ENST00000505878 1719 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
SNRNP40Q96DI7 PTCHD3P2-201ENST00000424937 1205 ntBASIC20.85■□□□□ 0.93
SNRNP40Q96DI7 AC008764.7-201ENST00000593779 1081 ntBASIC20.85■□□□□ 0.93
SNRNP40Q96DI7 LMTK3-202ENST00000600059 5113 ntAPPRIS ALT2 TSL 2 BASIC20.85■□□□□ 0.93
SNRNP40Q96DI7 MATK-204ENST00000585778 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
SNRNP40Q96DI7 ST6GALNAC6-205ENST00000373146 2460 ntAPPRIS P3 TSL 1 (best) BASIC20.84■□□□□ 0.93
SNRNP40Q96DI7 COL13A1-203ENST00000398969 2267 ntAPPRIS ALT2 TSL 5 BASIC20.84■□□□□ 0.93
SNRNP40Q96DI7 SLC25A6-201ENST00000381401 2062 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
SNRNP40Q96DI7 SERF1A-202ENST00000354833 1889 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
SNRNP40Q96DI7 C20orf27-202ENST00000379772 1886 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
SNRNP40Q96DI7 SERF1B-201ENST00000380750 1889 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
SNRNP40Q96DI7 LKAAEAR1-201ENST00000302096 761 ntAPPRIS ALT2 TSL 2 BASIC20.84■□□□□ 0.93
SNRNP40Q96DI7 LKAAEAR1-202ENST00000308906 868 ntAPPRIS P2 TSL 1 (best) BASIC20.84■□□□□ 0.93
SNRNP40Q96DI7 CYC1-201ENST00000318911 1240 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
SNRNP40Q96DI7 CTAG2-202ENST00000369585 748 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
SNRNP40Q96DI7 CEP104-201ENST00000378223 1121 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
SNRNP40Q96DI7 ACYP2-202ENST00000394666 993 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 12.4 ms