Protein–RNA interactions for Protein: O95238

SPDEF, SAM pointed domain-containing Ets transcription factor, humanhuman

Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SPDEFO95238 NHLH1-201ENST00000302101 2563 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
SPDEFO95238 CRHR1-201ENST00000293493 2621 ntTSL 5 BASIC19.45■□□□□ 0.7
SPDEFO95238 CCDC151-203ENST00000591179 1943 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
SPDEFO95238 PTPMT1-205ENST00000534775 1611 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
SPDEFO95238 PARD3-214ENST00000545693 5962 ntAPPRIS ALT2 TSL 1 (best) BASIC19.45■□□□□ 0.7
SPDEFO95238 MDFIC-206ENST00000448022 484 ntTSL 2 BASIC19.45■□□□□ 0.7
SPDEFO95238 LTC4S-205ENST00000486713 496 ntTSL 2 BASIC19.45■□□□□ 0.7
SPDEFO95238 CLDND1-226ENST00000513287 999 ntAPPRIS P1 TSL 2 BASIC19.45■□□□□ 0.7
SPDEFO95238 AC092296.2-201ENST00000589470 999 ntBASIC19.45■□□□□ 0.7
SPDEFO95238 TNFSF12-TNFSF13-201ENST00000293826 1816 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
SPDEFO95238 CTSZ-201ENST00000217131 1495 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
SPDEFO95238 KAT5-208ENST00000530446 1697 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
SPDEFO95238 HOXD9-201ENST00000249499 1870 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
SPDEFO95238 CBWD5-202ENST00000377384 1347 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
SPDEFO95238 REST-210ENST00000638187 1334 ntTSL 5 BASIC19.45■□□□□ 0.7
SPDEFO95238 HOXC9-201ENST00000303450 1516 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
SPDEFO95238 SKIDA1-201ENST00000444772 2667 ntAPPRIS ALT2 TSL 5 BASIC19.45■□□□□ 0.7
SPDEFO95238 PCYT2-201ENST00000331285 2147 ntTSL 2 BASIC19.45■□□□□ 0.7
SPDEFO95238 NECAB2-201ENST00000305202 1608 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
SPDEFO95238 TM6SF1-204ENST00000379390 1638 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
SPDEFO95238 FMR1-208ENST00000440235 4271 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
SPDEFO95238 REPIN1-214ENST00000489432 2058 ntAPPRIS ALT2 TSL 2 BASIC19.44■□□□□ 0.7
SPDEFO95238 TPRN-202ENST00000409012 2718 ntAPPRIS P2 TSL 1 (best) BASIC19.44■□□□□ 0.7
SPDEFO95238 ZBTB46-202ENST00000302995 2335 ntAPPRIS P1 TSL 2 BASIC19.44■□□□□ 0.7
SPDEFO95238 C1orf122-201ENST00000373042 973 ntAPPRIS P3 TSL 1 (best) BASIC19.44■□□□□ 0.7
SPDEFO95238 PFN2-211ENST00000489155 636 ntTSL 4 BASIC19.44■□□□□ 0.7
SPDEFO95238 AC025884.2-201ENST00000553429 711 ntBASIC19.44■□□□□ 0.7
SPDEFO95238 C6orf136-201ENST00000293604 1978 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
SPDEFO95238 NFE2L3P1-201ENST00000588207 1959 ntBASIC19.44■□□□□ 0.7
SPDEFO95238 ALDH16A1-202ENST00000455361 2470 ntTSL 2 BASIC19.44■□□□□ 0.7
SPDEFO95238 AKT2-206ENST00000392038 5300 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
SPDEFO95238 HNRNPUL2-201ENST00000301785 5106 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
SPDEFO95238 ARHGEF7-AS2-201ENST00000425094 1239 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
SPDEFO95238 BLOC1S3-202ENST00000587722 732 ntAPPRIS P1 BASIC19.43■□□□□ 0.7
SPDEFO95238 MOB2-207ENST00000614710 705 ntTSL 5 BASIC19.43■□□□□ 0.7
SPDEFO95238 AC022413.1-201ENST00000624602 984 ntBASIC19.43■□□□□ 0.7
SPDEFO95238 NPAS3-210ENST00000551492 2817 ntAPPRIS ALT2 TSL 5 BASIC19.43■□□□□ 0.7
SPDEFO95238 TRIM67-203ENST00000449018 2166 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
SPDEFO95238 HOMEZ-201ENST00000357460 4971 ntAPPRIS P2 TSL 1 (best) BASIC19.43■□□□□ 0.7
SPDEFO95238 LAT-201ENST00000354453 1713 ntAPPRIS ALT2 TSL 5 BASIC19.42■□□□□ 0.7
SPDEFO95238 ZAR1-201ENST00000327939 1460 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
SPDEFO95238 TST-202ENST00000403892 1797 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
SPDEFO95238 PTOV1-201ENST00000391842 1875 ntAPPRIS P1 TSL 5 BASIC19.42■□□□□ 0.7
SPDEFO95238 RUNX1-205ENST00000399240 1590 ntTSL 3 BASIC19.42■□□□□ 0.7
SPDEFO95238 AC141586.4-201ENST00000624558 1573 ntBASIC19.42■□□□□ 0.7
SPDEFO95238 HES4-202ENST00000428771 1040 ntTSL 2 BASIC19.42■□□□□ 0.7
SPDEFO95238 ECEL1P2-201ENST00000461596 1295 ntBASIC19.42■□□□□ 0.7
SPDEFO95238 MIR3960-201ENST00000583311 91 ntBASIC19.42■□□□□ 0.7
SPDEFO95238 TTC39C-209ENST00000584250 1048 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
SPDEFO95238 PRPSAP2-201ENST00000268835 1910 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
SPDEFO95238 ATAD3A-202ENST00000378755 2612 ntTSL 2 BASIC19.42■□□□□ 0.7
SPDEFO95238 MAP6D1-201ENST00000318631 2111 ntAPPRIS P2 TSL 1 (best) BASIC19.42■□□□□ 0.7
SPDEFO95238 ZBTB25-202ENST00000555220 1440 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
SPDEFO95238 SCARA5-204ENST00000524352 1945 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
SPDEFO95238 ANKS3-204ENST00000585773 1946 ntTSL 2 BASIC19.41■□□□□ 0.7
SPDEFO95238 KCNK12-201ENST00000327876 6227 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
SPDEFO95238 MAPK9-203ENST00000393360 4326 ntTSL 5 BASIC19.41■□□□□ 0.7
SPDEFO95238 APBB3-204ENST00000358580 2020 ntTSL 5 BASIC19.41■□□□□ 0.7
SPDEFO95238 GRK4-202ENST00000398051 2068 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
SPDEFO95238 RPS2-201ENST00000343262 985 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
SPDEFO95238 GRPEL2-204ENST00000513661 546 ntTSL 2 BASIC19.41■□□□□ 0.7
SPDEFO95238 CEP120-209ENST00000515110 606 ntTSL 3 BASIC19.41■□□□□ 0.7
SPDEFO95238 EPHB2-207ENST00000544305 1709 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
SPDEFO95238 MYO1C-203ENST00000438665 4898 ntAPPRIS ALT1 TSL 5 BASIC19.41■□□□□ 0.7
SPDEFO95238 AKT1S1-201ENST00000344175 1760 ntAPPRIS P1 TSL 3 BASIC19.41■□□□□ 0.7
SPDEFO95238 ARID1B-220ENST00000636930 8246 ntAPPRIS ALT2 TSL 2 BASIC19.41■□□□□ 0.7
SPDEFO95238 RRP9-201ENST00000232888 1578 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
SPDEFO95238 C2orf72-201ENST00000373640 3657 ntAPPRIS P1 TSL 2 BASIC19.4■□□□□ 0.7
SPDEFO95238 TXNRD2-201ENST00000334363 1893 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
SPDEFO95238 ACSF2-207ENST00000504392 1881 ntTSL 2 BASIC19.4■□□□□ 0.7
SPDEFO95238 PKIG-207ENST00000372894 1191 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
SPDEFO95238 ZDHHC3-203ENST00000342790 1336 ntTSL 5 BASIC19.4■□□□□ 0.7
SPDEFO95238 NHLRC4-202ENST00000540585 2071 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
SPDEFO95238 FAM102B-201ENST00000370035 5600 ntAPPRIS P2 TSL 1 (best) BASIC19.4■□□□□ 0.7
SPDEFO95238 ZSCAN18-202ENST00000421612 1488 ntTSL 4 BASIC19.4■□□□□ 0.7
SPDEFO95238 LTBP3-212ENST00000529189 1997 ntTSL 2 BASIC19.39■□□□□ 0.7
SPDEFO95238 ITGB1BP1-203ENST00000359712 2126 ntTSL 2 BASIC19.39■□□□□ 0.69
SPDEFO95238 AC233723.2-201ENST00000623798 2106 ntBASIC19.39■□□□□ 0.69
SPDEFO95238 ZBED3-201ENST00000255198 6172 ntAPPRIS P2 TSL 1 (best) BASIC19.39■□□□□ 0.69
SPDEFO95238 PIGX-201ENST00000296333 953 ntAPPRIS ALT2 TSL 2 BASIC19.39■□□□□ 0.69
SPDEFO95238 TMEM114-202ENST00000568335 899 ntTSL 3 BASIC19.39■□□□□ 0.69
SPDEFO95238 PCSK6-217ENST00000618548 4269 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.69
SPDEFO95238 MTCL1-201ENST00000306329 5718 ntAPPRIS ALT2 TSL 5 BASIC19.39■□□□□ 0.69
SPDEFO95238 GNG10-201ENST00000374293 1491 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
SPDEFO95238 SMPD5-203ENST00000639008 1464 ntBASIC19.39■□□□□ 0.69
SPDEFO95238 LRFN4-202ENST00000393952 1550 ntTSL 5 BASIC19.39■□□□□ 0.69
SPDEFO95238 ZNF641-205ENST00000547026 1823 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
SPDEFO95238 TMEM200B-201ENST00000420504 2553 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
SPDEFO95238 PTGER1-201ENST00000292513 1421 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
SPDEFO95238 SAV1-201ENST00000324679 3063 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
SPDEFO95238 EVA1C-203ENST00000401402 1558 ntTSL 5 BASIC19.38■□□□□ 0.69
SPDEFO95238 BARX1-202ENST00000401724 1323 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
SPDEFO95238 NEK6-214ENST00000545174 2573 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
SPDEFO95238 NEIL1-206ENST00000564784 2019 ntAPPRIS P1 TSL 2 BASIC19.38■□□□□ 0.69
SPDEFO95238 R3HDM4-208ENST00000626716 138 ntTSL 5 BASIC19.38■□□□□ 0.69
SPDEFO95238 MAP7D1-201ENST00000316156 3456 ntAPPRIS ALT2 TSL 1 (best) BASIC19.38■□□□□ 0.69
SPDEFO95238 TMEM259-201ENST00000333175 2581 ntAPPRIS P3 TSL 1 (best) BASIC19.38■□□□□ 0.69
SPDEFO95238 SLC35B2-202ENST00000393812 2043 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
SPDEFO95238 CNR1-203ENST00000369501 6031 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
SPDEFO95238 UBTD1-201ENST00000370664 1706 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 128.8 ms