Protein–RNA interactions for Protein: Q9H239

MMP28, Matrix metalloproteinase-28, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MMP28Q9H239 PCK2-201ENST00000216780 2357 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
MMP28Q9H239 E2F5-202ENST00000416274 1728 ntAPPRIS P4 TSL 1 (best) BASIC20.32■□□□□ 0.84
MMP28Q9H239 WDR86-201ENST00000334493 2023 ntAPPRIS P1 TSL 5 BASIC20.32■□□□□ 0.84
MMP28Q9H239 LSM6-202ENST00000502781 1352 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
MMP28Q9H239 CCDC136-202ENST00000378685 1689 ntAPPRIS ALT2 TSL 2 BASIC20.32■□□□□ 0.84
MMP28Q9H239 SMARCD2-201ENST00000225742 1800 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
MMP28Q9H239 KAT5-201ENST00000341318 2296 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
MMP28Q9H239 ARL6IP4-211ENST00000454885 1318 ntAPPRIS ALT2 TSL 1 (best) BASIC20.31■□□□□ 0.84
MMP28Q9H239 CRELD2-203ENST00000404488 1577 ntAPPRIS ALT2 TSL 1 (best) BASIC20.31■□□□□ 0.84
MMP28Q9H239 C1orf229-201ENST00000623686 2258 ntBASIC20.31■□□□□ 0.84
MMP28Q9H239 ZNF843-201ENST00000315678 2137 ntAPPRIS P2 TSL 2 BASIC20.31■□□□□ 0.84
MMP28Q9H239 STARD10-220ENST00000545082 1085 ntTSL 3 BASIC20.31■□□□□ 0.84
MMP28Q9H239 PLEKHA8-203ENST00000396259 2840 ntTSL 2 BASIC20.31■□□□□ 0.84
MMP28Q9H239 GNPTG-201ENST00000204679 1983 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
MMP28Q9H239 PRKACA-201ENST00000308677 2677 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
MMP28Q9H239 RNF39-201ENST00000244360 2206 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
MMP28Q9H239 ARPC2-202ENST00000315717 1505 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
MMP28Q9H239 DONSON-202ENST00000303113 2028 ntTSL 5 BASIC20.31■□□□□ 0.84
MMP28Q9H239 ARHGAP29-202ENST00000370217 2043 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
MMP28Q9H239 CDC34-201ENST00000215574 1471 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
MMP28Q9H239 GNA11-201ENST00000078429 4147 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
MMP28Q9H239 DDN-AS1-202ENST00000547866 2114 ntTSL 3 BASIC20.3■□□□□ 0.84
MMP28Q9H239 VGLL2-201ENST00000326274 2212 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
MMP28Q9H239 PNMA6A-201ENST00000421798 2209 ntAPPRIS P1 TSL 2 BASIC20.3■□□□□ 0.84
MMP28Q9H239 TBX1-201ENST00000329705 1465 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
MMP28Q9H239 NELFCD-213ENST00000602795 2305 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
MMP28Q9H239 SOWAHD-201ENST00000343905 1552 ntAPPRIS P1 BASIC20.29■□□□□ 0.84
MMP28Q9H239 DHRS13-203ENST00000426464 1569 ntTSL 2 BASIC20.29■□□□□ 0.84
MMP28Q9H239 AMZ2P1-201ENST00000397713 2259 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
MMP28Q9H239 CYP4V2-201ENST00000378802 2042 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
MMP28Q9H239 SLC25A23-203ENST00000334510 1424 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
MMP28Q9H239 PDF-201ENST00000288022 1158 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
MMP28Q9H239 AC010907.1-201ENST00000441632 807 ntTSL 3 BASIC20.29■□□□□ 0.84
MMP28Q9H239 PLEKHF2-202ENST00000519516 1144 ntAPPRIS P1 TSL 3 BASIC20.29■□□□□ 0.84
MMP28Q9H239 RPS20-211ENST00000524349 752 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
MMP28Q9H239 FRAT1-201ENST00000371021 2649 ntAPPRIS P1 BASIC20.29■□□□□ 0.84
MMP28Q9H239 CACNA1H-202ENST00000358590 8069 ntAPPRIS ALT2 TSL 5 BASIC20.29■□□□□ 0.84
MMP28Q9H239 LTK-201ENST00000263800 3046 ntAPPRIS P4 TSL 1 (best) BASIC20.29■□□□□ 0.84
MMP28Q9H239 MAP7D1-201ENST00000316156 3456 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
MMP28Q9H239 MRPS7-203ENST00000579002 1638 ntTSL 2 BASIC20.28■□□□□ 0.84
MMP28Q9H239 FAM83D-201ENST00000619304 2475 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
MMP28Q9H239 GFI1-203ENST00000427103 2693 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
MMP28Q9H239 AKT2-234ENST00000579047 2029 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
MMP28Q9H239 AQP1-203ENST00000409899 1009 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
MMP28Q9H239 CLDND1-226ENST00000513287 999 ntAPPRIS P1 TSL 2 BASIC20.28■□□□□ 0.84
MMP28Q9H239 EPB41L4A-AS2-201ENST00000623705 1396 ntBASIC20.28■□□□□ 0.84
MMP28Q9H239 MRPL4-201ENST00000253099 1455 ntAPPRIS P2 TSL 1 (best) BASIC20.28■□□□□ 0.84
MMP28Q9H239 MPPED1-203ENST00000443721 2507 ntAPPRIS P1 TSL 2 BASIC20.28■□□□□ 0.84
MMP28Q9H239 ASF1B-201ENST00000263382 2059 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
MMP28Q9H239 RABEP2-201ENST00000357573 2175 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
MMP28Q9H239 MEIS2-207ENST00000557796 2666 ntTSL 5 BASIC20.28■□□□□ 0.84
MMP28Q9H239 P4HA3-202ENST00000427714 2248 ntTSL 2 BASIC20.27■□□□□ 0.84
MMP28Q9H239 RAB11FIP3-201ENST00000262305 4831 ntAPPRIS P2 TSL 1 (best) BASIC20.27■□□□□ 0.84
MMP28Q9H239 UPF3A-202ENST00000375299 2387 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
MMP28Q9H239 BOK-AS1-201ENST00000434306 643 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
MMP28Q9H239 VAV3-202ENST00000370056 4990 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
MMP28Q9H239 ESR2-202ENST00000341099 2060 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
MMP28Q9H239 AC007375.3-201ENST00000600936 2314 ntBASIC20.26■□□□□ 0.83
MMP28Q9H239 GAL3ST3-203ENST00000527878 1599 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
MMP28Q9H239 EYA2-203ENST00000357410 2465 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
MMP28Q9H239 AC078883.1-202ENST00000450443 1397 ntTSL 3 BASIC20.26■□□□□ 0.83
MMP28Q9H239 FBXO25-203ENST00000352684 2360 ntTSL 5 BASIC20.26■□□□□ 0.83
MMP28Q9H239 SLC25A24-204ENST00000569674 2357 ntBASIC20.26■□□□□ 0.83
MMP28Q9H239 VEGFA-208ENST00000417285 1081 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
MMP28Q9H239 CMPK2-203ENST00000458098 1224 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
MMP28Q9H239 ABHD17AP3-201ENST00000503096 1137 ntBASIC20.26■□□□□ 0.83
MMP28Q9H239 AC009041.3-201ENST00000564390 879 ntTSL 5 BASIC20.26■□□□□ 0.83
MMP28Q9H239 UBA52-204ENST00000595158 743 ntAPPRIS P1 TSL 3 BASIC20.26■□□□□ 0.83
MMP28Q9H239 BRD4-212ENST00000630599 726 ntTSL 2 BASIC20.26■□□□□ 0.83
MMP28Q9H239 SLC6A10P-202ENST00000431994 2058 ntBASIC20.26■□□□□ 0.83
MMP28Q9H239 BAZ1A-201ENST00000358716 5920 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
MMP28Q9H239 DGCR6-208ENST00000608842 1837 ntTSL 2 BASIC20.25■□□□□ 0.83
MMP28Q9H239 ARPC2-201ENST00000295685 1605 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
MMP28Q9H239 SLC22A18-201ENST00000312221 1628 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
MMP28Q9H239 CIB2-202ENST00000539011 1511 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
MMP28Q9H239 KDM4C-203ENST00000401787 1406 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
MMP28Q9H239 ANKRD9-205ENST00000560748 1413 ntAPPRIS P1 TSL 2 BASIC20.25■□□□□ 0.83
MMP28Q9H239 CCR10-203ENST00000591765 1942 ntTSL 3 BASIC20.25■□□□□ 0.83
MMP28Q9H239 PRODH-203ENST00000357068 2462 ntAPPRIS P3 TSL 1 (best) BASIC20.25■□□□□ 0.83
MMP28Q9H239 ARRDC1-AS1-203ENST00000623970 2210 ntTSL 5 BASIC20.25■□□□□ 0.83
MMP28Q9H239 ARL2BP-201ENST00000219204 2130 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
MMP28Q9H239 SLC22A17-201ENST00000206544 2284 ntAPPRIS P4 TSL 1 (best) BASIC20.24■□□□□ 0.83
MMP28Q9H239 EMC10-206ENST00000598585 1610 ntAPPRIS ALT2 TSL 5 BASIC20.24■□□□□ 0.83
MMP28Q9H239 ARSB-206ENST00000565165 1772 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
MMP28Q9H239 MXD3-201ENST00000423571 1534 ntTSL 2 BASIC20.24■□□□□ 0.83
MMP28Q9H239 TSEN54-201ENST00000333213 1944 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
MMP28Q9H239 CTCF-202ENST00000401394 2978 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
MMP28Q9H239 DOK3-205ENST00000501403 1872 ntAPPRIS P1 TSL 5 BASIC20.24■□□□□ 0.83
MMP28Q9H239 SCLY-201ENST00000254663 2562 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
MMP28Q9H239 ANKRD13D-202ENST00000447274 2881 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
MMP28Q9H239 AC099805.1-201ENST00000523987 1797 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
MMP28Q9H239 IRX4-201ENST00000231357 2221 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
MMP28Q9H239 PAXBP1-201ENST00000290178 2564 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
MMP28Q9H239 LSM7-201ENST00000252622 529 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
MMP28Q9H239 EVA1C-203ENST00000401402 1558 ntTSL 5 BASIC20.23■□□□□ 0.83
MMP28Q9H239 HAR1A-201ENST00000433161 1882 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
MMP28Q9H239 WDR86-204ENST00000477459 1428 ntTSL 2 BASIC20.23■□□□□ 0.83
MMP28Q9H239 GNPTG-204ENST00000527137 386 ntTSL 2 BASIC20.23■□□□□ 0.83
MMP28Q9H239 DISC1-223ENST00000628350 2363 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
MMP28Q9H239 PTPRM-211ENST00000580170 5941 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 22.8 ms