RNA–Protein interactions for RNA: ENST00000225742.13

SMARCD2-201, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 2, humanhuman

TSL 1 (best) BASIC

Gene SMARCD2, Length 1,800 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCD2-201ENST00000225742 NISCHQ9Y2I1 1504 aa46.54■■■■■ 5.04
SMARCD2-201ENST00000225742 CCDC180Q9P1Z9 1646 aa39.97■■■■□ 3.99
SMARCD2-201ENST00000225742 ZCCHC6Q5VYS8 1495 aaKnown RBP39.34■■■■□ 3.89
SMARCD2-201ENST00000225742 SHROOM4Q9ULL8 1493 aa38.87■■■■□ 3.81
SMARCD2-201ENST00000225742 DCAF1Q9Y4B6 1507 aa38.49■■■■□ 3.75
SMARCD2-201ENST00000225742 SUPT5HO00267 1087 aaKnown RBP38.06■■■■□ 3.68
SMARCD2-201ENST00000225742 DCAF8L2P0C7V8 631 aa38.03■■■■□ 3.68
SMARCD2-201ENST00000225742 MYO15BQ96JP2 1530 aa37.54■■■■□ 3.6
SMARCD2-201ENST00000225742 CHIC1Q5VXU3 224 aa37.14■■■■□ 3.54
SMARCD2-201ENST00000225742 ABCC9O60706 1549 aa37.08■■■■□ 3.53
SMARCD2-201ENST00000225742 SCRIBQ14160 1630 aa36.95■■■■□ 3.5
SMARCD2-201ENST00000225742 NACADO15069 1562 aa36.93■■■■□ 3.5
SMARCD2-201ENST00000225742 RSF1Q96T23 1441 aaPredicted RBP36.61■■■■□ 3.45
SMARCD2-201ENST00000225742 RB1CC1Q8TDY2 1594 aa36.33■■■■□ 3.41
SMARCD2-201ENST00000225742 CECR2Q9BXF3 1484 aa36.05■■■■□ 3.36
SMARCD2-201ENST00000225742 MROH2BQ7Z745 1585 aa36■■■■□ 3.35
SMARCD2-201ENST00000225742 BAZ1AQ9NRL2 1556 aaPredicted RBP35.83■■■■□ 3.33
SMARCD2-201ENST00000225742 WIZO95785 1651 aa35.79■■■■□ 3.32
SMARCD2-201ENST00000225742 LOC105371045A0A1W2PR82 267 aa35.76■■■■□ 3.31
SMARCD2-201ENST00000225742 TRIM41Q8WV44 630 aa35.71■■■■□ 3.31
SMARCD2-201ENST00000225742 UNC13AQ9UPW8 1703 aa35.64■■■■□ 3.3
SMARCD2-201ENST00000225742 HRCP23327 699 aa35.58■■■■□ 3.29
SMARCD2-201ENST00000225742 PCGF6Q9BYE7 350 aa35.51■■■■□ 3.28
SMARCD2-201ENST00000225742 SMARCA4P51532 1647 aa35.5■■■■□ 3.27
SMARCD2-201ENST00000225742 TOP2AP11388 1531 aaKnown RBP35.45■■■■□ 3.27
SMARCD2-201ENST00000225742 EIF4G1Q04637 1599 aaKnown RBP35.39■■■■□ 3.26
SMARCD2-201ENST00000225742 TRIM26Q12899 539 aaPredicted RBP35.21■■■■□ 3.23
SMARCD2-201ENST00000225742 BICRAQ9NZM4 1560 aa35.19■■■■□ 3.22
SMARCD2-201ENST00000225742 SMARCA2P51531 1590 aa35.16■■■■□ 3.22
SMARCD2-201ENST00000225742 CCDC88BA6NC98 1476 aa35.12■■■■□ 3.21
SMARCD2-201ENST00000225742 FAM9AQ8IZU1 332 aaPredicted RBP35.08■■■■□ 3.21
SMARCD2-201ENST00000225742 PEG3Q9GZU2 1588 aa35.01■■■■□ 3.19
SMARCD2-201ENST00000225742 PABPN1Q86U42 306 aaKnown RBP eCLIP34.83■■■■□ 3.175e-8■■■□□ 16.1
SMARCD2-201ENST00000225742 ABCC8Q09428 1581 aa34.78■■■■□ 3.16
SMARCD2-201ENST00000225742 EEA1Q15075 1411 aa34.64■■■■□ 3.14
SMARCD2-201ENST00000225742 ATAD2BQ9ULI0 1458 aa34.59■■■■□ 3.13
SMARCD2-201ENST00000225742 ZEB1P37275 1124 aaPredicted RBP34.54■■■■□ 3.12
SMARCD2-201ENST00000225742 EHMT2Q96KQ7 1210 aa34.52■■■■□ 3.12
SMARCD2-201ENST00000225742 PPARGC1BQ86YN6 1023 aaKnown RBP34.48■■■■□ 3.11
SMARCD2-201ENST00000225742 BAZ1BQ9UIG0 1483 aaKnown RBP34.48■■■■□ 3.11
SMARCD2-201ENST00000225742 WRNQ14191 1432 aaPredicted RBP eCLIP34.42■■■■□ 3.1
SMARCD2-201ENST00000225742 SOGA1O94964 1423 aa34.41■■■■□ 3.1
SMARCD2-201ENST00000225742 TNIKQ9UKE5 1360 aa34.37■■■■□ 3.09
SMARCD2-201ENST00000225742 CSRNP3Q8WYN3 585 aa34.32■■■■□ 3.09
SMARCD2-201ENST00000225742 CEP162Q5TB80 1403 aa34.25■■■■□ 3.07
SMARCD2-201ENST00000225742 SYNJ1O43426 1573 aa34.22■■■■□ 3.07
SMARCD2-201ENST00000225742 GOLGA3Q08378 1498 aa34.2■■■■□ 3.07
SMARCD2-201ENST00000225742 RUSC2Q8N2Y8 1516 aa34.19■■■■□ 3.06
SMARCD2-201ENST00000225742 HMGXB3Q12766 1538 aa34.13■■■■□ 3.05
SMARCD2-201ENST00000225742 KIF21BO75037 1637 aa34.11■■■■□ 3.05
SMARCD2-201ENST00000225742 NCAPD3P42695 1498 aa34.08■■■■□ 3.05
SMARCD2-201ENST00000225742 CEP164Q9UPV0 1460 aa34.07■■■■□ 3.04
SMARCD2-201ENST00000225742 UBTFP17480 764 aaKnown RBP34■■■■□ 3.03
SMARCD2-201ENST00000225742 TOP2BQ02880 1626 aa33.99■■■■□ 3.03
SMARCD2-201ENST00000225742 BIVM-ERCC5R4GMW8 1640 aa33.94■■■■□ 3.02
SMARCD2-201ENST00000225742 CLIP1P30622 1438 aa33.7■■■□□ 2.99
SMARCD2-201ENST00000225742 CFTRP13569 1480 aa33.68■■■□□ 2.98
SMARCD2-201ENST00000225742 RAPGEF2Q9Y4G8 1499 aa33.64■■■□□ 2.98
SMARCD2-201ENST00000225742 ERICH3Q5RHP9 1530 aa33.64■■■□□ 2.98
SMARCD2-201ENST00000225742 PRDM2Q13029 1718 aa33.61■■■□□ 2.97
SMARCD2-201ENST00000225742 VPS8Q8N3P4 1428 aa33.6■■■□□ 2.97
SMARCD2-201ENST00000225742 CCER1Q8TC90 406 aaPredicted RBP33.59■■■□□ 2.97
SMARCD2-201ENST00000225742 CUX1P39880 1505 aa33.58■■■□□ 2.97
SMARCD2-201ENST00000225742 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP33.54■■■□□ 2.96
SMARCD2-201ENST00000225742 PRXQ9BXM0 1461 aa33.54■■■□□ 2.96
SMARCD2-201ENST00000225742 KIF27Q86VH2 1401 aa33.44■■■□□ 2.94
SMARCD2-201ENST00000225742 TTBK1Q5TCY1 1321 aaPredicted RBP33.4■■■□□ 2.94
SMARCD2-201ENST00000225742 APLP2Q06481 763 aa33.32■■■□□ 2.93
SMARCD2-201ENST00000225742 CADPSQ9ULU8 1353 aa33.3■■■□□ 2.92
SMARCD2-201ENST00000225742 ARAP1Q96P48 1450 aa33.2■■■□□ 2.9
SMARCD2-201ENST00000225742 CC2D2AQ9P2K1 1620 aa33.2■■■□□ 2.9
SMARCD2-201ENST00000225742 CUX2O14529 1486 aa33.05■■■□□ 2.88
SMARCD2-201ENST00000225742 RANGAP1P46060 587 aaPredicted RBP33.02■■■□□ 2.88
SMARCD2-201ENST00000225742 IGF1RP08069 1367 aa33.01■■■□□ 2.88
SMARCD2-201ENST00000225742 FGD5Q6ZNL6 1462 aa33.01■■■□□ 2.87
SMARCD2-201ENST00000225742 HNRNPUL2Q1KMD3 747 aaKnown RBP32.96■■■□□ 2.87
SMARCD2-201ENST00000225742 ARHGAP35Q9NRY4 1499 aa32.95■■■□□ 2.87
SMARCD2-201ENST00000225742 FANCD2Q9BXW9 1451 aa32.94■■■□□ 2.86
SMARCD2-201ENST00000225742 DNMBPQ6XZF7 1577 aa32.89■■■□□ 2.86
SMARCD2-201ENST00000225742 CARMIL1Q5VZK9 1371 aa32.87■■■□□ 2.85
SMARCD2-201ENST00000225742 RRBP1Q9P2E9 1410 aaKnown RBP32.82■■■□□ 2.84
SMARCD2-201ENST00000225742 MAP3K1Q13233 1512 aa32.81■■■□□ 2.84
SMARCD2-201ENST00000225742 DIEXFQ68CQ4 756 aaKnown RBP32.81■■■□□ 2.84
SMARCD2-201ENST00000225742 ABCA10Q8WWZ4 1543 aa32.76■■■□□ 2.84
SMARCD2-201ENST00000225742 CLSPNQ9HAW4 1339 aa32.76■■■□□ 2.83
SMARCD2-201ENST00000225742 ZNF316A6NFI3 1004 aaPredicted RBP32.76■■■□□ 2.83
SMARCD2-201ENST00000225742 KANK4Q5T7N3 995 aaPredicted RBP32.76■■■□□ 2.83
SMARCD2-201ENST00000225742 TOPBP1Q92547 1522 aa32.73■■■□□ 2.83
SMARCD2-201ENST00000225742 LAMC3Q9Y6N6 1575 aa32.7■■■□□ 2.83
SMARCD2-201ENST00000225742 POLA1P09884 1462 aaPredicted RBP32.66■■■□□ 2.82
SMARCD2-201ENST00000225742 CUL7Q14999 1698 aa32.65■■■□□ 2.82
SMARCD2-201ENST00000225742 TIAM1Q13009 1591 aa32.64■■■□□ 2.82
SMARCD2-201ENST00000225742 FHAD1B1AJZ9 1412 aa32.61■■■□□ 2.81
SMARCD2-201ENST00000225742 CCNB3Q8WWL7 1395 aa32.6■■■□□ 2.81
SMARCD2-201ENST00000225742 NESP48681 1621 aa32.58■■■□□ 2.81
SMARCD2-201ENST00000225742 RAD54L2Q9Y4B4 1467 aa32.57■■■□□ 2.81
SMARCD2-201ENST00000225742 DHX57Q6P158 1386 aaKnown RBP32.55■■■□□ 2.8
SMARCD2-201ENST00000225742 EFCAB5A4FU69 1503 aa32.55■■■□□ 2.8
SMARCD2-201ENST00000225742 WDR97A6NE52 1622 aa32.53■■■□□ 2.8
SMARCD2-201ENST00000225742 CFAP43Q8NDM7 1665 aa32.5■■■□□ 2.79
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms