Protein–RNA interactions for Protein: Q7Z3Y7

KRT28, Keratin, type I cytoskeletal 28, humanhuman

Predictions only

Length 464 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT28Q7Z3Y7 YJEFN3-201ENST00000436027 878 ntAPPRIS P1 TSL 1 (best) BASIC31.97■■■□□ 2.71
KRT28Q7Z3Y7 CA15P2-201ENST00000611168 834 ntBASIC31.97■■■□□ 2.71
KRT28Q7Z3Y7 SYT6-210ENST00000641643 1587 ntBASIC31.97■■■□□ 2.71
KRT28Q7Z3Y7 MATK-201ENST00000310132 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC31.97■■■□□ 2.71
KRT28Q7Z3Y7 TST-202ENST00000403892 1797 ntAPPRIS P1 TSL 1 (best) BASIC31.96■■■□□ 2.71
KRT28Q7Z3Y7 TSPAN10-203ENST00000574882 1837 ntAPPRIS P2 TSL 1 (best) BASIC31.96■■■□□ 2.71
KRT28Q7Z3Y7 BAD-203ENST00000394532 1157 ntAPPRIS P1 TSL 1 (best) BASIC31.96■■■□□ 2.71
KRT28Q7Z3Y7 RPUSD3-206ENST00000433535 1178 ntTSL 1 (best) BASIC31.95■■■□□ 2.71
KRT28Q7Z3Y7 GLI3-203ENST00000437480 451 ntTSL 2 BASIC31.95■■■□□ 2.71
KRT28Q7Z3Y7 SCO2-204ENST00000543927 1051 ntAPPRIS P1 TSL 2 BASIC31.95■■■□□ 2.71
KRT28Q7Z3Y7 MROH6-202ENST00000524906 1794 ntAPPRIS ALT2 TSL 3 BASIC31.94■■■□□ 2.7
KRT28Q7Z3Y7 FNDC4-201ENST00000264703 1657 ntAPPRIS P1 TSL 1 (best) BASIC31.94■■■□□ 2.7
KRT28Q7Z3Y7 TSPAN4-202ENST00000397396 1332 ntTSL 5 BASIC31.94■■■□□ 2.7
KRT28Q7Z3Y7 RASA4CP-201ENST00000424092 1398 ntBASIC31.94■■■□□ 2.7
KRT28Q7Z3Y7 ATP6V0A2-209ENST00000613625 1620 ntTSL 1 (best) BASIC31.93■■■□□ 2.7
KRT28Q7Z3Y7 CKB-201ENST00000348956 1709 ntAPPRIS P1 TSL 1 (best) BASIC31.93■■■□□ 2.7
KRT28Q7Z3Y7 PTMA-205ENST00000410064 814 ntTSL 2 BASIC31.93■■■□□ 2.7
KRT28Q7Z3Y7 TMEM218-209ENST00000529583 848 ntAPPRIS P1 TSL 3 BASIC31.93■■■□□ 2.7
KRT28Q7Z3Y7 SYNGR3-206ENST00000618464 1213 ntTSL 1 (best) BASIC31.93■■■□□ 2.7
KRT28Q7Z3Y7 AC005703.6-201ENST00000623265 1329 ntBASIC31.93■■■□□ 2.7
KRT28Q7Z3Y7 AC112229.4-201ENST00000488671 1528 ntTSL 2 BASIC31.92■■■□□ 2.7
KRT28Q7Z3Y7 KBTBD13-201ENST00000432196 1377 ntAPPRIS P1 BASIC31.92■■■□□ 2.7
KRT28Q7Z3Y7 CBX4-201ENST00000269397 2664 ntAPPRIS P2 TSL 1 (best) BASIC31.92■■■□□ 2.7
KRT28Q7Z3Y7 C2CD4D-201ENST00000454109 1757 ntAPPRIS P1 TSL 2 BASIC31.91■■■□□ 2.7
KRT28Q7Z3Y7 UNCX-201ENST00000316333 2048 ntAPPRIS P1 TSL 1 (best) BASIC31.91■■■□□ 2.7
KRT28Q7Z3Y7 CYC1-201ENST00000318911 1240 ntAPPRIS P1 TSL 1 (best) BASIC31.9■■■□□ 2.7
KRT28Q7Z3Y7 SERBP1P1-201ENST00000396021 1160 ntBASIC31.9■■■□□ 2.7
KRT28Q7Z3Y7 CLPSL2-202ENST00000403376 405 ntAPPRIS P3 TSL 1 (best) BASIC31.9■■■□□ 2.7
KRT28Q7Z3Y7 ZNF821-201ENST00000313565 1874 ntTSL 1 (best) BASIC31.9■■■□□ 2.7
KRT28Q7Z3Y7 CENPH-201ENST00000283006 1389 ntAPPRIS P1 TSL 1 (best) BASIC31.9■■■□□ 2.7
KRT28Q7Z3Y7 PRELID1-203ENST00000503216 1171 ntTSL 1 (best) BASIC31.89■■■□□ 2.7
KRT28Q7Z3Y7 ORAI3-202ENST00000562699 628 ntTSL 2 BASIC31.89■■■□□ 2.7
KRT28Q7Z3Y7 ECHDC1-203ENST00000368291 1354 ntTSL 2 BASIC31.89■■■□□ 2.7
KRT28Q7Z3Y7 GADD45A-202ENST00000370986 1496 ntAPPRIS P1 TSL 1 (best) BASIC31.89■■■□□ 2.7
KRT28Q7Z3Y7 SPOCK3-221ENST00000512648 1456 ntTSL 1 (best) BASIC31.89■■■□□ 2.7
KRT28Q7Z3Y7 HSF4-225ENST00000584272 1549 ntTSL 1 (best) BASIC31.88■■■□□ 2.69
KRT28Q7Z3Y7 CEND1-201ENST00000330106 1649 ntAPPRIS P1 TSL 1 (best) BASIC31.88■■■□□ 2.69
KRT28Q7Z3Y7 YWHAH-201ENST00000248975 1825 ntAPPRIS P1 TSL 1 (best) BASIC31.88■■■□□ 2.69
KRT28Q7Z3Y7 C19orf47-202ENST00000392035 2126 ntAPPRIS ALT2 TSL 1 (best) BASIC31.88■■■□□ 2.69
KRT28Q7Z3Y7 ESRRA-201ENST00000000442 2215 ntAPPRIS P3 TSL 1 (best) BASIC31.88■■■□□ 2.69
KRT28Q7Z3Y7 IRAK1-205ENST00000429936 2127 ntTSL 5 BASIC31.87■■■□□ 2.69
KRT28Q7Z3Y7 TTBK2-205ENST00000567274 1777 ntTSL 5 BASIC31.87■■■□□ 2.69
KRT28Q7Z3Y7 WFDC1-201ENST00000219454 1534 ntAPPRIS P1 TSL 1 (best) BASIC31.87■■■□□ 2.69
KRT28Q7Z3Y7 HES6-201ENST00000272937 1454 ntAPPRIS P3 TSL 1 (best) BASIC31.87■■■□□ 2.69
KRT28Q7Z3Y7 MARCH2-201ENST00000215555 1376 ntAPPRIS P1 TSL 5 BASIC31.87■■■□□ 2.69
KRT28Q7Z3Y7 EPDR1-202ENST00000423717 638 ntTSL 1 (best) BASIC31.87■■■□□ 2.69
KRT28Q7Z3Y7 PRELID2-204ENST00000505416 738 ntAPPRIS P2 TSL 3 BASIC31.87■■■□□ 2.69
KRT28Q7Z3Y7 AC092171.4-201ENST00000609130 632 ntBASIC31.87■■■□□ 2.69
KRT28Q7Z3Y7 RUNDC3A-201ENST00000225441 1821 ntTSL 1 (best) BASIC31.86■■■□□ 2.69
KRT28Q7Z3Y7 AC116614.1-201ENST00000456949 539 ntTSL 2 BASIC31.85■■■□□ 2.69
KRT28Q7Z3Y7 SLC35A3-216ENST00000639221 1032 ntTSL 5 BASIC31.85■■■□□ 2.69
KRT28Q7Z3Y7 SPEF1-201ENST00000379756 1580 ntAPPRIS P1 TSL 1 (best) BASIC31.85■■■□□ 2.69
KRT28Q7Z3Y7 RCCD1-203ENST00000555155 1871 ntAPPRIS ALT1 TSL 5 BASIC31.84■■■□□ 2.69
KRT28Q7Z3Y7 CTAG2-202ENST00000369585 748 ntAPPRIS P1 TSL 1 (best) BASIC31.84■■■□□ 2.69
KRT28Q7Z3Y7 TMEM147-203ENST00000392205 767 ntTSL 2 BASIC31.84■■■□□ 2.69
KRT28Q7Z3Y7 ACYP2-202ENST00000394666 993 ntAPPRIS P1 TSL 1 (best) BASIC31.84■■■□□ 2.69
KRT28Q7Z3Y7 SDHAP1-204ENST00000427415 559 ntTSL 4 BASIC31.84■■■□□ 2.69
KRT28Q7Z3Y7 C11orf80-210ENST00000527634 1666 ntAPPRIS ALT2 TSL 5 BASIC31.83■■■□□ 2.69
KRT28Q7Z3Y7 C1QTNF1-206ENST00000579760 1672 ntAPPRIS P1 TSL 1 (best) BASIC31.83■■■□□ 2.69
KRT28Q7Z3Y7 IRS3P-201ENST00000223076 1006 ntBASIC31.83■■■□□ 2.69
KRT28Q7Z3Y7 WDR86-AS1-204ENST00000489632 751 ntTSL 3 BASIC31.83■■■□□ 2.69
KRT28Q7Z3Y7 NRIP3-203ENST00000531090 980 ntTSL 2 BASIC31.83■■■□□ 2.69
KRT28Q7Z3Y7 AC027682.1-201ENST00000562846 899 ntBASIC31.83■■■□□ 2.69
KRT28Q7Z3Y7 BCL3-201ENST00000164227 2038 ntAPPRIS P1 TSL 1 (best) BASIC31.83■■■□□ 2.69
KRT28Q7Z3Y7 LRRC75A-203ENST00000470794 1390 ntAPPRIS ALT2 TSL 1 (best) BASIC31.82■■■□□ 2.69
KRT28Q7Z3Y7 PFKFB4-204ENST00000416568 1575 ntTSL 1 (best) BASIC31.82■■■□□ 2.68
KRT28Q7Z3Y7 GLTPD2-201ENST00000331264 1023 ntAPPRIS P1 TSL 1 (best) BASIC31.82■■■□□ 2.68
KRT28Q7Z3Y7 AC008764.7-201ENST00000593779 1081 ntBASIC31.82■■■□□ 2.68
KRT28Q7Z3Y7 AC099791.2-201ENST00000605725 427 ntBASIC31.82■■■□□ 2.68
KRT28Q7Z3Y7 AUH-201ENST00000303617 1490 ntTSL 1 (best) BASIC31.82■■■□□ 2.68
KRT28Q7Z3Y7 B3GALT4-204ENST00000451237 1694 ntAPPRIS P1 BASIC31.82■■■□□ 2.68
KRT28Q7Z3Y7 STX18-205ENST00000505286 1380 ntTSL 1 (best) BASIC31.81■■■□□ 2.68
KRT28Q7Z3Y7 KAT8-202ENST00000448516 1789 ntTSL 1 (best) BASIC31.81■■■□□ 2.68
KRT28Q7Z3Y7 FBXL6-202ENST00000455319 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC31.81■■■□□ 2.68
KRT28Q7Z3Y7 LINC01678-201ENST00000411694 863 ntTSL 5 BASIC31.81■■■□□ 2.68
KRT28Q7Z3Y7 AC104564.5-201ENST00000584986 278 ntTSL 3 BASIC31.81■■■□□ 2.68
KRT28Q7Z3Y7 AC011446.1-201ENST00000591825 458 ntTSL 2 BASIC31.81■■■□□ 2.68
KRT28Q7Z3Y7 OSCAR-203ENST00000356532 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC31.81■■■□□ 2.68
KRT28Q7Z3Y7 OSCAR-204ENST00000358375 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC31.81■■■□□ 2.68
KRT28Q7Z3Y7 OSCAR-210ENST00000616447 1358 ntAPPRIS ALT2 TSL 5 BASIC31.81■■■□□ 2.68
KRT28Q7Z3Y7 AC097639.1-201ENST00000565519 1891 ntBASIC31.8■■■□□ 2.68
KRT28Q7Z3Y7 ZNF641-205ENST00000547026 1823 ntAPPRIS P1 TSL 1 (best) BASIC31.8■■■□□ 2.68
KRT28Q7Z3Y7 CREB3L3-205ENST00000602257 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC31.8■■■□□ 2.68
KRT28Q7Z3Y7 BTBD6-205ENST00000536364 1973 ntAPPRIS P2 TSL 5 BASIC31.8■■■□□ 2.68
KRT28Q7Z3Y7 JTB-203ENST00000368589 1216 ntTSL 2 BASIC31.8■■■□□ 2.68
KRT28Q7Z3Y7 PTCHD3P2-201ENST00000424937 1205 ntBASIC31.8■■■□□ 2.68
KRT28Q7Z3Y7 AC068580.1-201ENST00000446489 252 ntTSL 3 BASIC31.8■■■□□ 2.68
KRT28Q7Z3Y7 ACAP1-206ENST00000571471 320 ntTSL 2 BASIC31.8■■■□□ 2.68
KRT28Q7Z3Y7 AC008105.3-201ENST00000586376 844 ntTSL 3 BASIC31.8■■■□□ 2.68
KRT28Q7Z3Y7 SIGMAR1-201ENST00000277010 1656 ntAPPRIS P1 TSL 1 (best) BASIC31.8■■■□□ 2.68
KRT28Q7Z3Y7 ARL6IP4-210ENST00000453766 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC31.79■■■□□ 2.68
KRT28Q7Z3Y7 PHF23-212ENST00000576955 1944 ntTSL 2 BASIC31.79■■■□□ 2.68
KRT28Q7Z3Y7 SERINC5-203ENST00000509193 1441 ntTSL 1 (best) BASIC31.79■■■□□ 2.68
KRT28Q7Z3Y7 PLSCR3-209ENST00000574401 2032 ntAPPRIS P1 TSL 1 (best) BASIC31.78■■■□□ 2.68
KRT28Q7Z3Y7 AC096887.2-201ENST00000623443 1957 ntBASIC31.78■■■□□ 2.68
KRT28Q7Z3Y7 NGEF-203ENST00000409079 1022 ntTSL 1 (best) BASIC31.78■■■□□ 2.68
KRT28Q7Z3Y7 AL122058.1-201ENST00000412321 1166 ntTSL 1 (best) BASIC31.78■■■□□ 2.68
KRT28Q7Z3Y7 AC004707.1-201ENST00000511627 715 ntTSL 3 BASIC31.78■■■□□ 2.68
KRT28Q7Z3Y7 EDA-209ENST00000525810 843 ntTSL 1 (best) BASIC31.78■■■□□ 2.68
KRT28Q7Z3Y7 NKX6-3-201ENST00000518699 1352 ntAPPRIS P1 TSL 5 BASIC31.78■■■□□ 2.68
Retrieved 100 of 98,524 protein–RNA pairs in 72.6 ms