Protein–RNA interactions for Protein: Q494X3

ZNF404, Zinc finger protein 404, humanhuman

Predictions only

Length 552 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF404Q494X3 TYMP-201ENST00000252029 1630 ntAPPRIS P3 TSL 1 (best) BASIC20.92■□□□□ 0.94
ZNF404Q494X3 ARPC2-201ENST00000295685 1605 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
ZNF404Q494X3 TYMP-203ENST00000395680 1608 ntAPPRIS P3 TSL 1 (best) BASIC20.92■□□□□ 0.94
ZNF404Q494X3 TYMP-204ENST00000395681 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC20.92■□□□□ 0.94
ZNF404Q494X3 CHKA-202ENST00000356135 1755 ntAPPRIS ALT2 TSL 1 (best) BASIC20.92■□□□□ 0.94
ZNF404Q494X3 GNPTG-201ENST00000204679 1983 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
ZNF404Q494X3 CYP4V2-201ENST00000378802 2042 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
ZNF404Q494X3 ESR2-202ENST00000341099 2060 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
ZNF404Q494X3 REPIN1-214ENST00000489432 2058 ntAPPRIS ALT2 TSL 2 BASIC20.92■□□□□ 0.94
ZNF404Q494X3 C8orf82-202ENST00000524821 2476 ntAPPRIS P2 TSL 1 (best) BASIC20.92■□□□□ 0.94
ZNF404Q494X3 PKM-201ENST00000319622 2717 ntAPPRIS P5 TSL 2 BASIC20.91■□□□□ 0.94
ZNF404Q494X3 GAS1-201ENST00000298743 2827 ntAPPRIS P1 BASIC20.91■□□□□ 0.94
ZNF404Q494X3 UBTF-213ENST00000533177 3011 ntTSL 5 BASIC20.91■□□□□ 0.94
ZNF404Q494X3 C11orf63-201ENST00000227349 3147 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
ZNF404Q494X3 CIDEB-201ENST00000258807 2294 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
ZNF404Q494X3 ZBTB46-202ENST00000302995 2335 ntAPPRIS P1 TSL 2 BASIC20.91■□□□□ 0.94
ZNF404Q494X3 TBX1-201ENST00000329705 1465 ntAPPRIS ALT2 TSL 1 (best) BASIC20.91■□□□□ 0.94
ZNF404Q494X3 CEP120-209ENST00000515110 606 ntTSL 3 BASIC20.91■□□□□ 0.94
ZNF404Q494X3 AC126177.7-201ENST00000547904 679 ntBASIC20.91■□□□□ 0.94
ZNF404Q494X3 UBALD1-203ENST00000587649 707 ntTSL 3 BASIC20.91■□□□□ 0.94
ZNF404Q494X3 DGCR6-208ENST00000608842 1837 ntTSL 2 BASIC20.91■□□□□ 0.94
ZNF404Q494X3 AK8-201ENST00000298545 2072 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
ZNF404Q494X3 GPX1-201ENST00000419349 1106 ntBASIC20.9■□□□□ 0.94
ZNF404Q494X3 MAP4K3-211ENST00000484274 407 ntTSL 2 BASIC20.9■□□□□ 0.94
ZNF404Q494X3 SPATA2L-201ENST00000289805 2335 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
ZNF404Q494X3 AC233723.2-201ENST00000623798 2106 ntBASIC20.9■□□□□ 0.94
ZNF404Q494X3 ARHGAP29-202ENST00000370217 2043 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
ZNF404Q494X3 SMARCD2-201ENST00000225742 1800 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
ZNF404Q494X3 AL024507.2-201ENST00000606070 2574 ntBASIC20.9■□□□□ 0.94
ZNF404Q494X3 CHADL-201ENST00000216241 2533 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
ZNF404Q494X3 INPP5J-206ENST00000404453 1613 ntTSL 1 (best) BASIC20.89■□□□□ 0.94
ZNF404Q494X3 PCDH1-204ENST00000503492 2373 ntTSL 5 BASIC20.89■□□□□ 0.94
ZNF404Q494X3 KCNQ5-208ENST00000414165 6236 ntTSL 5 BASIC20.89■□□□□ 0.94
ZNF404Q494X3 TANGO2-201ENST00000327374 2273 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
ZNF404Q494X3 ARHGEF9-210ENST00000623517 2143 ntTSL 2 BASIC20.89■□□□□ 0.94
ZNF404Q494X3 PTPMT1-203ENST00000426530 1014 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
ZNF404Q494X3 AC022413.1-201ENST00000624602 984 ntBASIC20.89■□□□□ 0.93
ZNF404Q494X3 TSR3-201ENST00000007390 1243 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
ZNF404Q494X3 DOK3-205ENST00000501403 1872 ntAPPRIS P1 TSL 5 BASIC20.89■□□□□ 0.93
ZNF404Q494X3 TMIE-201ENST00000326431 1824 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
ZNF404Q494X3 DTNB-206ENST00000404103 2384 ntAPPRIS ALT2 TSL 5 BASIC20.89■□□□□ 0.93
ZNF404Q494X3 IFNL4-201ENST00000606380 1637 ntAPPRIS P5 TSL 1 (best) BASIC20.89■□□□□ 0.93
ZNF404Q494X3 LY6K-201ENST00000292430 2671 ntAPPRIS P3 TSL 1 (best) BASIC20.89■□□□□ 0.93
ZNF404Q494X3 G6PD-202ENST00000393562 2631 ntAPPRIS P3 TSL 1 (best) BASIC20.89■□□□□ 0.93
ZNF404Q494X3 G6PD-211ENST00000621232 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC20.89■□□□□ 0.93
ZNF404Q494X3 COMT-204ENST00000403710 1548 ntAPPRIS P3 TSL 5 BASIC20.88■□□□□ 0.93
ZNF404Q494X3 VAV3-202ENST00000370056 4990 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
ZNF404Q494X3 PRPSAP2-201ENST00000268835 1910 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
ZNF404Q494X3 KCNG2-201ENST00000316249 1401 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
ZNF404Q494X3 MXRA7-201ENST00000355797 5661 ntAPPRIS P4 TSL 2 BASIC20.88■□□□□ 0.93
ZNF404Q494X3 PRMT5-213ENST00000553897 1857 ntTSL 2 BASIC20.88■□□□□ 0.93
ZNF404Q494X3 PKMYT1-211ENST00000573944 1891 ntAPPRIS P1 TSL 5 BASIC20.88■□□□□ 0.93
ZNF404Q494X3 OSBPL5-208ENST00000478260 2653 ntTSL 2 BASIC20.88■□□□□ 0.93
ZNF404Q494X3 WRNIP1-203ENST00000380771 2595 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
ZNF404Q494X3 C1orf122-201ENST00000373042 973 ntAPPRIS P3 TSL 1 (best) BASIC20.88■□□□□ 0.93
ZNF404Q494X3 MAP3K8-203ENST00000375322 932 ntTSL 2 BASIC20.88■□□□□ 0.93
ZNF404Q494X3 BAZ1A-201ENST00000358716 5920 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
ZNF404Q494X3 HOMER2-201ENST00000304231 1990 ntAPPRIS P4 TSL 5 BASIC20.88■□□□□ 0.93
ZNF404Q494X3 AC098864.1-205ENST00000315302 2260 ntTSL 2 BASIC20.88■□□□□ 0.93
ZNF404Q494X3 NEIL1-206ENST00000564784 2019 ntAPPRIS P1 TSL 2 BASIC20.87■□□□□ 0.93
ZNF404Q494X3 KAT5-201ENST00000341318 2296 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
ZNF404Q494X3 EMC10-206ENST00000598585 1610 ntAPPRIS ALT2 TSL 5 BASIC20.87■□□□□ 0.93
ZNF404Q494X3 AC060814.1-201ENST00000554326 538 ntBASIC20.87■□□□□ 0.93
ZNF404Q494X3 MED25-210ENST00000612854 801 ntTSL 5 BASIC20.87■□□□□ 0.93
ZNF404Q494X3 MED25-213ENST00000620467 1293 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
ZNF404Q494X3 MED25-214ENST00000622402 642 ntTSL 5 BASIC20.87■□□□□ 0.93
ZNF404Q494X3 SLC25A27-202ENST00000411689 2526 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
ZNF404Q494X3 TRIM67-203ENST00000449018 2166 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
ZNF404Q494X3 TPRN-202ENST00000409012 2718 ntAPPRIS P2 TSL 1 (best) BASIC20.87■□□□□ 0.93
ZNF404Q494X3 TAZ-216ENST00000613002 1485 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
ZNF404Q494X3 PMS1-220ENST00000618056 1468 ntTSL 5 BASIC20.87■□□□□ 0.93
ZNF404Q494X3 SLC9A3-203ENST00000514375 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
ZNF404Q494X3 RUFY1-201ENST00000319449 2646 ntAPPRIS P3 TSL 1 (best) BASIC20.86■□□□□ 0.93
ZNF404Q494X3 CCNYL1-202ENST00000339882 2619 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
ZNF404Q494X3 TBX2-AS1-202ENST00000589814 539 ntTSL 3 BASIC20.86■□□□□ 0.93
ZNF404Q494X3 CPE-201ENST00000402744 2421 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
ZNF404Q494X3 CNN3-201ENST00000370206 2165 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
ZNF404Q494X3 HIRA-201ENST00000263208 4053 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
ZNF404Q494X3 KDM4C-203ENST00000401787 1406 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
ZNF404Q494X3 ANKRD9-205ENST00000560748 1413 ntAPPRIS P1 TSL 2 BASIC20.86■□□□□ 0.93
ZNF404Q494X3 IRX2-201ENST00000302057 2456 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
ZNF404Q494X3 AGO3-204ENST00000397828 1035 ntTSL 2 BASIC20.85■□□□□ 0.93
ZNF404Q494X3 NME2-205ENST00000512737 826 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
ZNF404Q494X3 GNPTG-204ENST00000527137 386 ntTSL 2 BASIC20.85■□□□□ 0.93
ZNF404Q494X3 TMEM114-202ENST00000568335 899 ntTSL 3 BASIC20.85■□□□□ 0.93
ZNF404Q494X3 FKBP1A-204ENST00000400137 1622 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
ZNF404Q494X3 ANKHD1-204ENST00000394722 2035 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
ZNF404Q494X3 ITPKC-201ENST00000263370 3385 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
ZNF404Q494X3 YBX2-201ENST00000007699 1590 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
ZNF404Q494X3 USP2-204ENST00000525735 1704 ntAPPRIS ALT1 TSL 1 (best) BASIC20.84■□□□□ 0.93
ZNF404Q494X3 CIB2-202ENST00000539011 1511 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
ZNF404Q494X3 ASF1B-201ENST00000263382 2059 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
ZNF404Q494X3 EFS-203ENST00000429593 2610 ntTSL 2 BASIC20.84■□□□□ 0.93
ZNF404Q494X3 GPR137-202ENST00000377702 1478 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
ZNF404Q494X3 PCK2-201ENST00000216780 2357 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
ZNF404Q494X3 AC068134.2-201ENST00000437095 576 ntTSL 3 BASIC20.84■□□□□ 0.93
ZNF404Q494X3 ANKRD16-202ENST00000380092 1646 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
ZNF404Q494X3 TMEM200B-202ENST00000521452 2501 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
ZNF404Q494X3 MALT1-201ENST00000345724 2866 ntAPPRIS ALT2 TSL 1 (best) BASIC20.84■□□□□ 0.93
ZNF404Q494X3 TDRKH-205ENST00000368827 2318 ntAPPRIS P2 TSL 1 (best) BASIC20.84■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 92.6 ms