Protein–RNA interactions for Protein: Q9H239

MMP28, Matrix metalloproteinase-28, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MMP28Q9H239 MAP6D1-201ENST00000318631 2111 ntAPPRIS P2 TSL 1 (best) BASIC20.44■□□□□ 0.86
MMP28Q9H239 PTOV1-201ENST00000391842 1875 ntAPPRIS P1 TSL 5 BASIC20.43■□□□□ 0.86
MMP28Q9H239 ICAM5-201ENST00000221980 3000 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
MMP28Q9H239 TPRN-202ENST00000409012 2718 ntAPPRIS P2 TSL 1 (best) BASIC20.43■□□□□ 0.86
MMP28Q9H239 RRP9-201ENST00000232888 1578 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
MMP28Q9H239 HTRA2-201ENST00000258080 2370 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
MMP28Q9H239 KAT5-208ENST00000530446 1697 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
MMP28Q9H239 NHLH1-201ENST00000302101 2563 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
MMP28Q9H239 ALDH16A1-202ENST00000455361 2470 ntTSL 2 BASIC20.42■□□□□ 0.86
MMP28Q9H239 CENPV-201ENST00000299736 1165 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
MMP28Q9H239 AL121987.2-201ENST00000418602 1578 ntTSL 2 BASIC20.42■□□□□ 0.86
MMP28Q9H239 PDZRN4-202ENST00000402685 3347 ntAPPRIS P1 TSL 2 BASIC20.42■□□□□ 0.86
MMP28Q9H239 NEK6-214ENST00000545174 2573 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
MMP28Q9H239 SKIDA1-201ENST00000444772 2667 ntAPPRIS ALT2 TSL 5 BASIC20.41■□□□□ 0.86
MMP28Q9H239 ZNF641-205ENST00000547026 1823 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
MMP28Q9H239 LTBP3-212ENST00000529189 1997 ntTSL 2 BASIC20.41■□□□□ 0.86
MMP28Q9H239 SLC35B2-202ENST00000393812 2043 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
MMP28Q9H239 GRK4-202ENST00000398051 2068 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
MMP28Q9H239 LINC01896-206ENST00000575722 1256 ntTSL 2 BASIC20.41■□□□□ 0.86
MMP28Q9H239 G6PC3-201ENST00000269097 1533 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
MMP28Q9H239 AC141586.4-201ENST00000624558 1573 ntBASIC20.41■□□□□ 0.86
MMP28Q9H239 REEP6-201ENST00000233596 1794 ntAPPRIS P2 TSL 1 (best) BASIC20.41■□□□□ 0.86
MMP28Q9H239 AC091230.1-202ENST00000564823 5356 ntTSL 2 BASIC20.41■□□□□ 0.86
MMP28Q9H239 AC011511.4-201ENST00000586529 1850 ntAPPRIS P1 TSL 5 BASIC20.41■□□□□ 0.86
MMP28Q9H239 C6orf136-201ENST00000293604 1978 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
MMP28Q9H239 PRPSAP2-201ENST00000268835 1910 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
MMP28Q9H239 APBB3-204ENST00000358580 2020 ntTSL 5 BASIC20.4■□□□□ 0.86
MMP28Q9H239 UBTD1-201ENST00000370664 1706 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
MMP28Q9H239 FAAP20-202ENST00000378546 729 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
MMP28Q9H239 REPIN1-214ENST00000489432 2058 ntAPPRIS ALT2 TSL 2 BASIC20.4■□□□□ 0.86
MMP28Q9H239 AC105219.1-201ENST00000531565 1963 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
MMP28Q9H239 NEIL1-206ENST00000564784 2019 ntAPPRIS P1 TSL 2 BASIC20.4■□□□□ 0.86
MMP28Q9H239 AC004812.2-201ENST00000611079 2094 ntBASIC20.4■□□□□ 0.86
MMP28Q9H239 SPATA33-209ENST00000579310 1490 ntAPPRIS ALT2 TSL 2 BASIC20.39■□□□□ 0.85
MMP28Q9H239 TMEM200B-201ENST00000420504 2553 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
MMP28Q9H239 PARD6A-201ENST00000219255 1248 ntAPPRIS P3 TSL 1 (best) BASIC20.39■□□□□ 0.85
MMP28Q9H239 GRPEL2-204ENST00000513661 546 ntTSL 2 BASIC20.39■□□□□ 0.85
MMP28Q9H239 AC148477.6-201ENST00000623746 465 ntBASIC20.39■□□□□ 0.85
MMP28Q9H239 DCUN1D2-208ENST00000478244 2045 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
MMP28Q9H239 RNF223-201ENST00000453464 1902 ntAPPRIS P1 TSL 2 BASIC20.39■□□□□ 0.85
MMP28Q9H239 ATAD3A-202ENST00000378755 2612 ntTSL 2 BASIC20.39■□□□□ 0.85
MMP28Q9H239 TMEM259-201ENST00000333175 2581 ntAPPRIS P3 TSL 1 (best) BASIC20.39■□□□□ 0.85
MMP28Q9H239 AUTS2-203ENST00000406775 5950 ntAPPRIS ALT2 TSL 1 (best) BASIC20.39■□□□□ 0.85
MMP28Q9H239 C9orf50-201ENST00000372478 1620 ntAPPRIS P2 TSL 2 BASIC20.38■□□□□ 0.85
MMP28Q9H239 S1PR4-201ENST00000246115 1565 ntAPPRIS P1 BASIC20.38■□□□□ 0.85
MMP28Q9H239 LACTBL1-202ENST00000618559 1500 ntAPPRIS ALT2 TSL 5 BASIC20.38■□□□□ 0.85
MMP28Q9H239 NKX6-2-201ENST00000368592 2673 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
MMP28Q9H239 SARDH-203ENST00000371868 2266 ntTSL 2 BASIC20.38■□□□□ 0.85
MMP28Q9H239 ITGB1BP1-203ENST00000359712 2126 ntTSL 2 BASIC20.38■□□□□ 0.85
MMP28Q9H239 MXRA7-201ENST00000355797 5661 ntAPPRIS P4 TSL 2 BASIC20.37■□□□□ 0.85
MMP28Q9H239 ACSF2-207ENST00000504392 1881 ntTSL 2 BASIC20.37■□□□□ 0.85
MMP28Q9H239 AC098864.1-205ENST00000315302 2260 ntTSL 2 BASIC20.37■□□□□ 0.85
MMP28Q9H239 TTBK2-205ENST00000567274 1777 ntTSL 5 BASIC20.37■□□□□ 0.85
MMP28Q9H239 TRIM67-203ENST00000449018 2166 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
MMP28Q9H239 AC018413.1-201ENST00000581996 1200 ntTSL 2 BASIC20.37■□□□□ 0.85
MMP28Q9H239 AC233723.2-201ENST00000623798 2106 ntBASIC20.37■□□□□ 0.85
MMP28Q9H239 NPAS3-210ENST00000551492 2817 ntAPPRIS ALT2 TSL 5 BASIC20.37■□□□□ 0.85
MMP28Q9H239 MAPKAP1-207ENST00000394060 1586 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
MMP28Q9H239 PEX10-204ENST00000507596 1941 ntAPPRIS ALT1 TSL 5 BASIC20.37■□□□□ 0.85
MMP28Q9H239 TST-202ENST00000403892 1797 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
MMP28Q9H239 NHLRC4-202ENST00000540585 2071 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
MMP28Q9H239 TANGO2-201ENST00000327374 2273 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
MMP28Q9H239 CLTA-207ENST00000470744 1102 ntTSL 2 BASIC20.36■□□□□ 0.85
MMP28Q9H239 CHST11-203ENST00000547956 936 ntTSL 2 BASIC20.36■□□□□ 0.85
MMP28Q9H239 C16orf95-205ENST00000567970 1031 ntAPPRIS ALT2 TSL 5 BASIC20.36■□□□□ 0.85
MMP28Q9H239 METRNL-202ENST00000570778 967 ntTSL 5 BASIC20.36■□□□□ 0.85
MMP28Q9H239 R3HDM4-208ENST00000626716 138 ntTSL 5 BASIC20.36■□□□□ 0.85
MMP28Q9H239 MIR219A2-201ENST00000608502 1504 ntBASIC20.36■□□□□ 0.85
MMP28Q9H239 PCDH1-204ENST00000503492 2373 ntTSL 5 BASIC20.36■□□□□ 0.85
MMP28Q9H239 EGR4-202ENST00000545030 2372 ntAPPRIS P2 TSL 1 (best) BASIC20.36■□□□□ 0.85
MMP28Q9H239 GOLGA7-201ENST00000357743 2027 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
MMP28Q9H239 B3GNT6-202ENST00000622824 2503 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
MMP28Q9H239 CMTM4-201ENST00000330687 3414 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
MMP28Q9H239 REPS2-202ENST00000357277 7953 ntAPPRIS P3 TSL 1 (best) BASIC20.35■□□□□ 0.85
MMP28Q9H239 SSX2IP-203ENST00000437941 5843 ntTSL 2 BASIC20.35■□□□□ 0.85
MMP28Q9H239 TTC9-201ENST00000256367 5217 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
MMP28Q9H239 PPAN-202ENST00000393793 1575 ntTSL 5 BASIC20.34■□□□□ 0.85
MMP28Q9H239 CHST13-201ENST00000319340 1789 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
MMP28Q9H239 MAPK12-211ENST00000622558 1779 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
MMP28Q9H239 CNN3-201ENST00000370206 2165 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
MMP28Q9H239 TMEM104-205ENST00000582773 1740 ntTSL 2 BASIC20.34■□□□□ 0.85
MMP28Q9H239 CACYBP-201ENST00000367679 2766 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
MMP28Q9H239 COPZ2-210ENST00000621465 895 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
MMP28Q9H239 SOS2-201ENST00000216373 5498 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
MMP28Q9H239 AK8-201ENST00000298545 2072 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
MMP28Q9H239 IQANK1-201ENST00000527139 1803 ntAPPRIS P1 TSL 5 BASIC20.34■□□□□ 0.85
MMP28Q9H239 KCTD8-201ENST00000360029 2587 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
MMP28Q9H239 FAM72A-202ENST00000367128 2398 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
MMP28Q9H239 FAM72D-201ENST00000400889 2397 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
MMP28Q9H239 KCNIP2-206ENST00000356640 1989 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
MMP28Q9H239 TSPAN17-207ENST00000508164 2457 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
MMP28Q9H239 DTNBP1-212ENST00000622898 1305 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
MMP28Q9H239 AC073111.5-206ENST00000642087 859 ntAPPRIS P1 BASIC20.33■□□□□ 0.85
MMP28Q9H239 SLC9A3-203ENST00000514375 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC20.33■□□□□ 0.84
MMP28Q9H239 SAV1-201ENST00000324679 3063 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
MMP28Q9H239 ANKHD1-204ENST00000394722 2035 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
MMP28Q9H239 PGF-203ENST00000553716 1699 ntAPPRIS ALT2 TSL 1 (best) BASIC20.32■□□□□ 0.84
MMP28Q9H239 PLEKHA8-208ENST00000622102 2140 ntTSL 5 BASIC20.32■□□□□ 0.84
MMP28Q9H239 HSD17B1P1-201ENST00000590052 955 ntBASIC20.32■□□□□ 0.84
MMP28Q9H239 C16orf74-204ENST00000602719 1002 ntAPPRIS ALT2 TSL 3 BASIC20.32■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 77.4 ms