Protein–RNA interactions for Protein: O75161

NPHP4, Nephrocystin-4, humanhuman

Predicted RBP Predictions only

Length 1,426 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4O75161 RHOF-204ENST00000537265 699 ntTSL 2 BASIC33.58■■■□□ 2.97
NPHP4O75161 HERC2P4-206ENST00000568097 1062 ntTSL 5 BASIC33.58■■■□□ 2.97
NPHP4O75161 C6orf89-201ENST00000355190 1309 ntAPPRIS P3 TSL 1 (best) BASIC33.58■■■□□ 2.97
NPHP4O75161 ARL4D-201ENST00000320033 1612 ntAPPRIS P1 TSL 1 (best) BASIC33.58■■■□□ 2.97
NPHP4O75161 TMEM179-204ENST00000556573 1430 ntAPPRIS P1 TSL 3 BASIC33.58■■■□□ 2.97
NPHP4O75161 BSCL2-205ENST00000403550 1693 ntAPPRIS P3 TSL 5 BASIC33.57■■■□□ 2.96
NPHP4O75161 CTU1-201ENST00000421832 2087 ntAPPRIS P1 TSL 2 BASIC33.57■■■□□ 2.96
NPHP4O75161 C14orf80-205ENST00000392523 1845 ntAPPRIS ALT2 TSL 1 (best) BASIC33.57■■■□□ 2.96
NPHP4O75161 RRAD-201ENST00000299759 1569 ntAPPRIS P1 TSL 1 (best) BASIC33.56■■■□□ 2.96
NPHP4O75161 BCL2L12-201ENST00000246784 990 ntAPPRIS ALT2 TSL 1 (best) BASIC33.56■■■□□ 2.96
NPHP4O75161 BAD-203ENST00000394532 1157 ntAPPRIS P1 TSL 1 (best) BASIC33.56■■■□□ 2.96
NPHP4O75161 ASB1-202ENST00000409297 878 ntTSL 5 BASIC33.56■■■□□ 2.96
NPHP4O75161 AC062017.1-203ENST00000413029 455 ntTSL 2 BASIC33.56■■■□□ 2.96
NPHP4O75161 AC080013.1-202ENST00000465477 674 ntTSL 5 BASIC33.56■■■□□ 2.96
NPHP4O75161 TMEM218-209ENST00000529583 848 ntAPPRIS P1 TSL 3 BASIC33.56■■■□□ 2.96
NPHP4O75161 AC022517.1-201ENST00000592429 346 ntBASIC33.56■■■□□ 2.96
NPHP4O75161 GLRX3-201ENST00000331244 1302 ntAPPRIS P1 TSL 1 (best) BASIC33.56■■■□□ 2.96
NPHP4O75161 DRD5P2-201ENST00000421395 2012 ntBASIC33.56■■■□□ 2.96
NPHP4O75161 PAOX-203ENST00000357296 1633 ntTSL 1 (best) BASIC33.56■■■□□ 2.96
NPHP4O75161 HOMER2-202ENST00000450735 1950 ntAPPRIS ALT2 TSL 1 (best) BASIC33.55■■■□□ 2.96
NPHP4O75161 AC092437.1-201ENST00000624794 1048 ntBASIC33.55■■■□□ 2.96
NPHP4O75161 CT47B1-201ENST00000371311 1328 ntAPPRIS P1 TSL 5 BASIC33.55■■■□□ 2.96
NPHP4O75161 BHLHA9-201ENST00000391429 902 ntAPPRIS P1 BASIC33.54■■■□□ 2.96
NPHP4O75161 LINC01942-201ENST00000521373 513 ntTSL 4 BASIC33.54■■■□□ 2.96
NPHP4O75161 FPGS-202ENST00000373228 1383 ntTSL 5 BASIC33.54■■■□□ 2.96
NPHP4O75161 STOML1-202ENST00000316911 1891 ntTSL 1 (best) BASIC33.54■■■□□ 2.96
NPHP4O75161 PPP1CC-206ENST00000550991 1882 ntTSL 2 BASIC33.54■■■□□ 2.96
NPHP4O75161 ARPC5L-201ENST00000259477 1325 ntAPPRIS P1 TSL 1 (best) BASIC33.53■■■□□ 2.96
NPHP4O75161 NGEF-203ENST00000409079 1022 ntTSL 1 (best) BASIC33.53■■■□□ 2.96
NPHP4O75161 TMEM170A-206ENST00000569276 609 ntTSL 2 BASIC33.53■■■□□ 2.96
NPHP4O75161 AC005410.1-201ENST00000579522 462 ntTSL 3 BASIC33.53■■■□□ 2.96
NPHP4O75161 AL137784.2-201ENST00000607332 1000 ntBASIC33.53■■■□□ 2.96
NPHP4O75161 SP2-202ENST00000613139 908 ntTSL 5 BASIC33.53■■■□□ 2.96
NPHP4O75161 FOXO3B-201ENST00000395675 1928 ntBASIC33.53■■■□□ 2.96
NPHP4O75161 AC092171.4-201ENST00000609130 632 ntBASIC33.53■■■□□ 2.96
NPHP4O75161 IFNGR2-201ENST00000290219 2221 ntAPPRIS P3 TSL 1 (best) BASIC33.52■■■□□ 2.96
NPHP4O75161 HDGF-210ENST00000537739 2073 ntAPPRIS P1 TSL 1 (best) BASIC33.52■■■□□ 2.96
NPHP4O75161 LKAAEAR1-201ENST00000302096 761 ntAPPRIS ALT2 TSL 2 BASIC33.52■■■□□ 2.96
NPHP4O75161 LKAAEAR1-202ENST00000308906 868 ntAPPRIS P2 TSL 1 (best) BASIC33.52■■■□□ 2.96
NPHP4O75161 DENND3-207ENST00000518347 850 ntTSL 2 BASIC33.52■■■□□ 2.96
NPHP4O75161 ACAP1-206ENST00000571471 320 ntTSL 2 BASIC33.52■■■□□ 2.96
NPHP4O75161 MYDGF-203ENST00000599630 713 ntTSL 2 BASIC33.52■■■□□ 2.96
NPHP4O75161 FBXL6-201ENST00000331890 1785 ntAPPRIS P3 TSL 1 (best) BASIC33.52■■■□□ 2.96
NPHP4O75161 ECHDC1-203ENST00000368291 1354 ntTSL 2 BASIC33.51■■■□□ 2.95
NPHP4O75161 HACD1-201ENST00000326961 773 ntTSL 2 BASIC33.51■■■□□ 2.95
NPHP4O75161 CTAG2-202ENST00000369585 748 ntAPPRIS P1 TSL 1 (best) BASIC33.51■■■□□ 2.95
NPHP4O75161 CTNNAL1-202ENST00000374593 761 ntTSL 3 BASIC33.51■■■□□ 2.95
NPHP4O75161 CLPSL2-202ENST00000403376 405 ntAPPRIS P3 TSL 1 (best) BASIC33.51■■■□□ 2.95
NPHP4O75161 LBH-205ENST00000407930 756 ntTSL 2 BASIC33.51■■■□□ 2.95
NPHP4O75161 AC099791.1-201ENST00000416440 715 ntBASIC33.51■■■□□ 2.95
NPHP4O75161 AP006621.3-202ENST00000530083 765 ntTSL 3 BASIC33.51■■■□□ 2.95
NPHP4O75161 CRACR2B-202ENST00000525077 1578 ntAPPRIS P1 TSL 1 (best) BASIC33.51■■■□□ 2.95
NPHP4O75161 CCNJL-201ENST00000257536 1848 ntAPPRIS P1 TSL 2 BASIC33.5■■■□□ 2.95
NPHP4O75161 FUS-202ENST00000380244 1818 ntAPPRIS ALT2 TSL 1 (best) BASIC33.5■■■□□ 2.95
NPHP4O75161 COL13A1-214ENST00000522165 2061 ntAPPRIS ALT2 TSL 5 BASIC33.5■■■□□ 2.95
NPHP4O75161 ACYP2-202ENST00000394666 993 ntAPPRIS P1 TSL 1 (best) BASIC33.5■■■□□ 2.95
NPHP4O75161 PTCHD3P2-201ENST00000424937 1205 ntBASIC33.5■■■□□ 2.95
NPHP4O75161 KRT18P5-201ENST00000436075 1291 ntBASIC33.5■■■□□ 2.95
NPHP4O75161 AC034268.1-201ENST00000441047 882 ntBASIC33.5■■■□□ 2.95
NPHP4O75161 PRELID1-203ENST00000503216 1171 ntTSL 1 (best) BASIC33.5■■■□□ 2.95
NPHP4O75161 AC011298.3-201ENST00000615796 283 ntBASIC33.5■■■□□ 2.95
NPHP4O75161 BBC3-204ENST00000449228 1827 ntTSL 1 (best) BASIC33.5■■■□□ 2.95
NPHP4O75161 SLC52A2-208ENST00000527078 1790 ntAPPRIS P1 TSL 5 BASIC33.5■■■□□ 2.95
NPHP4O75161 C7orf25-205ENST00000438029 1743 ntAPPRIS P1 TSL 2 BASIC33.5■■■□□ 2.95
NPHP4O75161 AC008764.7-201ENST00000593779 1081 ntBASIC33.49■■■□□ 2.95
NPHP4O75161 TRAF4-217ENST00000618771 543 ntTSL 5 BASIC33.49■■■□□ 2.95
NPHP4O75161 CUL4A-202ENST00000375440 2364 ntAPPRIS P1 TSL 1 (best) BASIC33.49■■■□□ 2.95
NPHP4O75161 ZDHHC23-206ENST00000498275 2055 ntAPPRIS ALT2 TSL 2 BASIC33.49■■■□□ 2.95
NPHP4O75161 WDR86-AS1-204ENST00000489632 751 ntTSL 3 BASIC33.48■■■□□ 2.95
NPHP4O75161 CDC37L1-202ENST00000381858 1244 ntTSL 5 BASIC33.47■■■□□ 2.95
NPHP4O75161 AC068580.1-201ENST00000446489 252 ntTSL 3 BASIC33.47■■■□□ 2.95
NPHP4O75161 AC108002.2-201ENST00000519782 340 ntTSL 4 BASIC33.47■■■□□ 2.95
NPHP4O75161 LINC01003-201ENST00000564834 1764 ntBASIC33.47■■■□□ 2.95
NPHP4O75161 TMUB1-202ENST00000392818 1563 ntAPPRIS P1 TSL 1 (best) BASIC33.47■■■□□ 2.95
NPHP4O75161 AC090877.2-201ENST00000558441 1738 ntBASIC33.47■■■□□ 2.95
NPHP4O75161 LINC00588-201ENST00000521663 1875 ntTSL 2 BASIC33.47■■■□□ 2.95
NPHP4O75161 ENKD1-206ENST00000602644 1353 ntTSL 5 BASIC33.47■■■□□ 2.95
NPHP4O75161 TRADD-201ENST00000345057 1877 ntAPPRIS P1 TSL 1 (best) BASIC33.46■■■□□ 2.95
NPHP4O75161 CBLN1-201ENST00000219197 2435 ntAPPRIS P1 TSL 1 (best) BASIC33.46■■■□□ 2.95
NPHP4O75161 NEBL-AS1-202ENST00000439097 661 ntTSL 2 BASIC33.45■■■□□ 2.95
NPHP4O75161 SIRT3-215ENST00000532956 1235 ntTSL 2 BASIC33.45■■■□□ 2.95
NPHP4O75161 SLC30A10-202ENST00000366926 1915 ntAPPRIS P1 TSL 1 (best) BASIC33.45■■■□□ 2.95
NPHP4O75161 C11orf80-218ENST00000540737 1786 ntAPPRIS ALT2 TSL 2 BASIC33.45■■■□□ 2.95
NPHP4O75161 CYB561D2-205ENST00000425346 1319 ntAPPRIS P1 TSL 1 (best) BASIC33.45■■■□□ 2.95
NPHP4O75161 COMMD7-201ENST00000278980 1900 ntAPPRIS P3 TSL 1 (best) BASIC33.45■■■□□ 2.94
NPHP4O75161 NRG2-203ENST00000340391 1944 ntTSL 5 BASIC33.45■■■□□ 2.94
NPHP4O75161 STEAP2-207ENST00000402625 1372 ntTSL 5 BASIC33.44■■■□□ 2.94
NPHP4O75161 SPEF1-201ENST00000379756 1580 ntAPPRIS P1 TSL 1 (best) BASIC33.44■■■□□ 2.94
NPHP4O75161 EVA1C-203ENST00000401402 1558 ntTSL 5 BASIC33.44■■■□□ 2.94
NPHP4O75161 TIGD3-201ENST00000309880 2012 ntAPPRIS P1 TSL 2 BASIC33.44■■■□□ 2.94
NPHP4O75161 SPI1-201ENST00000227163 1168 ntAPPRIS ALT1 TSL 2 BASIC33.44■■■□□ 2.94
NPHP4O75161 CD47-202ENST00000361309 1285 ntTSL 1 (best) BASIC33.44■■■□□ 2.94
NPHP4O75161 ID1-201ENST00000376105 1233 ntBASIC33.44■■■□□ 2.94
NPHP4O75161 AL138963.3-201ENST00000610057 588 ntTSL 4 BASIC33.44■■■□□ 2.94
NPHP4O75161 SLC35A3-216ENST00000639221 1032 ntTSL 5 BASIC33.44■■■□□ 2.94
NPHP4O75161 NR6A1-201ENST00000344523 1846 ntAPPRIS ALT2 TSL 5 BASIC33.44■■■□□ 2.94
NPHP4O75161 VEGFC-202ENST00000618562 2064 ntAPPRIS P1 TSL 1 (best) BASIC33.43■■■□□ 2.94
NPHP4O75161 SDHAP1-204ENST00000427415 559 ntTSL 4 BASIC33.43■■■□□ 2.94
NPHP4O75161 CBWD3-212ENST00000616550 721 ntTSL 2 BASIC33.43■■■□□ 2.94
NPHP4O75161 CBWD6-216ENST00000617933 721 ntTSL 3 BASIC33.43■■■□□ 2.94
Retrieved 100 of 98,524 protein–RNA pairs in 43.2 ms