Protein–RNA interactions for Protein: P40938

RFC3, Replication factor C subunit 3, humanhuman

Predictions only

Length 356 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFC3P40938 CCKBR-201ENST00000334619 2121 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
RFC3P40938 RUNDC3A-201ENST00000225441 1821 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
RFC3P40938 ZNF747-203ENST00000568028 1511 ntAPPRIS P1 TSL 2 BASIC21.46■■□□□ 1.03
RFC3P40938 SNHG7-204ENST00000447221 2157 ntTSL 2 BASIC21.46■■□□□ 1.03
RFC3P40938 CHKB-AS1-201ENST00000380711 578 ntTSL 2 BASIC21.46■■□□□ 1.03
RFC3P40938 MRPS34-202ENST00000397375 1024 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
RFC3P40938 OSBP-201ENST00000263847 5083 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
RFC3P40938 CIRBP-216ENST00000588090 1459 ntAPPRIS P3 TSL 3 BASIC21.45■■□□□ 1.03
RFC3P40938 MAPKAP1-207ENST00000394060 1586 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
RFC3P40938 WIPI2-204ENST00000404704 1663 ntTSL 5 BASIC21.45■■□□□ 1.02
RFC3P40938 MOSPD3-204ENST00000424091 1115 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
RFC3P40938 TRAF7-203ENST00000565383 799 ntTSL 5 BASIC21.45■■□□□ 1.02
RFC3P40938 TUBBP5-204ENST00000635438 565 ntTSL 4 BASIC21.45■■□□□ 1.02
RFC3P40938 MADCAM1-202ENST00000346144 1309 ntAPPRIS ALT2 TSL 1 (best) BASIC21.45■■□□□ 1.02
RFC3P40938 AC021242.3-201ENST00000607598 1377 ntBASIC21.45■■□□□ 1.02
RFC3P40938 AC097639.1-201ENST00000565519 1891 ntBASIC21.45■■□□□ 1.02
RFC3P40938 MTNR1B-201ENST00000257068 1565 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
RFC3P40938 DRAM2-211ENST00000539140 1883 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
RFC3P40938 HMGA2-202ENST00000393577 611 ntTSL 3 BASIC21.44■■□□□ 1.02
RFC3P40938 RPL31-208ENST00000409733 825 ntAPPRIS P3 TSL 1 (best) BASIC21.44■■□□□ 1.02
RFC3P40938 KRT16P3-201ENST00000439127 1283 ntBASIC21.44■■□□□ 1.02
RFC3P40938 CCDC194-202ENST00000636079 705 ntAPPRIS P1 TSL 5 BASIC21.44■■□□□ 1.02
RFC3P40938 KAZALD1-201ENST00000370200 1913 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
RFC3P40938 SHD-201ENST00000543264 2577 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
RFC3P40938 KCNQ3-202ENST00000519445 2801 ntAPPRIS ALT2 TSL 5 BASIC21.44■■□□□ 1.02
RFC3P40938 ZNF428-201ENST00000300811 1412 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
RFC3P40938 SLC9A3R2-201ENST00000424542 2194 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
RFC3P40938 MORF4L1-202ENST00000379535 2274 ntTSL 2 BASIC21.43■■□□□ 1.02
RFC3P40938 FEZ1-202ENST00000366139 1053 ntTSL 2 BASIC21.43■■□□□ 1.02
RFC3P40938 MTURN-203ENST00000409688 843 ntTSL 2 BASIC21.43■■□□□ 1.02
RFC3P40938 TRAPPC5-202ENST00000426877 765 ntAPPRIS P1 TSL 2 BASIC21.43■■□□□ 1.02
RFC3P40938 CHTF8-205ENST00000519520 856 ntTSL 2 BASIC21.43■■□□□ 1.02
RFC3P40938 TCEA1-214ENST00000640382 1234 ntTSL 5 BASIC21.43■■□□□ 1.02
RFC3P40938 PYCR1-203ENST00000402252 1346 ntTSL 2 BASIC21.43■■□□□ 1.02
RFC3P40938 SNRNP70-206ENST00000598441 1574 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
RFC3P40938 YRDC-201ENST00000373044 1826 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
RFC3P40938 LINC01970-201ENST00000581489 1810 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
RFC3P40938 BTBD6-205ENST00000536364 1973 ntAPPRIS P2 TSL 5 BASIC21.43■■□□□ 1.02
RFC3P40938 MAZ-201ENST00000219782 2698 ntAPPRIS P4 TSL 1 (best) BASIC21.42■■□□□ 1.02
RFC3P40938 KIAA2013-201ENST00000376572 2815 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
RFC3P40938 ANKRD53-201ENST00000272421 2185 ntAPPRIS P3 TSL 1 (best) BASIC21.42■■□□□ 1.02
RFC3P40938 ROM1-201ENST00000278833 1878 ntAPPRIS P2 TSL 1 (best) BASIC21.42■■□□□ 1.02
RFC3P40938 RRAD-201ENST00000299759 1569 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
RFC3P40938 FHL2-203ENST00000358129 1578 ntTSL 5 BASIC21.42■■□□□ 1.02
RFC3P40938 BAMBI-201ENST00000375533 1877 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
RFC3P40938 GYG2-205ENST00000398806 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC21.42■■□□□ 1.02
RFC3P40938 LINC00588-201ENST00000521663 1875 ntTSL 2 BASIC21.42■■□□□ 1.02
RFC3P40938 AP002893.1-201ENST00000528885 684 ntTSL 2 BASIC21.42■■□□□ 1.02
RFC3P40938 TMEM260-202ENST00000538838 1638 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
RFC3P40938 CCER2-201ENST00000571838 1057 ntAPPRIS P2 TSL 5 BASIC21.42■■□□□ 1.02
RFC3P40938 AC011551.1-201ENST00000614101 683 ntBASIC21.42■■□□□ 1.02
RFC3P40938 POLE2-201ENST00000216367 1776 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
RFC3P40938 CHST13-201ENST00000319340 1789 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
RFC3P40938 KAT8-202ENST00000448516 1789 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
RFC3P40938 FANCE-201ENST00000229769 2554 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
RFC3P40938 KISS1-201ENST00000367194 709 ntAPPRIS P2 TSL 1 (best) BASIC21.41■■□□□ 1.02
RFC3P40938 AC103702.2-201ENST00000433510 1270 ntTSL 2 BASIC21.41■■□□□ 1.02
RFC3P40938 TMEM165-204ENST00000506198 828 ntTSL 2 BASIC21.41■■□□□ 1.02
RFC3P40938 DTWD2-204ENST00000515439 1275 ntTSL 5 BASIC21.41■■□□□ 1.02
RFC3P40938 KLHL26-202ENST00000595182 522 ntTSL 4 BASIC21.41■■□□□ 1.02
RFC3P40938 AJAP1-201ENST00000378190 2383 ntAPPRIS P1 TSL 5 BASIC21.41■■□□□ 1.02
RFC3P40938 FAM107B-205ENST00000378467 2374 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
RFC3P40938 ANKS3-204ENST00000585773 1946 ntTSL 2 BASIC21.41■■□□□ 1.02
RFC3P40938 FSD1-201ENST00000221856 1831 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
RFC3P40938 NAPA-201ENST00000263354 1839 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
RFC3P40938 TMIE-201ENST00000326431 1824 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
RFC3P40938 NR6A1-201ENST00000344523 1846 ntAPPRIS ALT2 TSL 5 BASIC21.41■■□□□ 1.02
RFC3P40938 RINL-202ENST00000591812 1910 ntAPPRIS ALT2 TSL 2 BASIC21.4■■□□□ 1.02
RFC3P40938 PCMTD2-202ENST00000299468 1049 ntTSL 5 BASIC21.4■■□□□ 1.02
RFC3P40938 AC009531.1-201ENST00000442323 580 ntTSL 4 BASIC21.4■■□□□ 1.02
RFC3P40938 ZDHHC16-206ENST00000370854 1798 ntAPPRIS P4 TSL 1 (best) BASIC21.4■■□□□ 1.02
RFC3P40938 SAC3D1-201ENST00000398846 1566 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
RFC3P40938 NPAS3-203ENST00000357798 2763 ntAPPRIS ALT2 TSL 1 (best) BASIC21.39■■□□□ 1.02
RFC3P40938 PHF23-205ENST00000571362 1768 ntTSL 2 BASIC21.39■■□□□ 1.01
RFC3P40938 MDK-202ENST00000395565 951 ntAPPRIS P2 TSL 2 BASIC21.39■■□□□ 1.01
RFC3P40938 CUL4A-209ENST00000488558 1111 ntTSL 3 BASIC21.39■■□□□ 1.01
RFC3P40938 AP001267.3-203ENST00000554407 579 ntTSL 2 BASIC21.39■■□□□ 1.01
RFC3P40938 NAA30-203ENST00000555166 1294 ntAPPRIS ALT2 TSL 2 BASIC21.39■■□□□ 1.01
RFC3P40938 MCRIP1-210ENST00000576431 577 ntTSL 5 BASIC21.39■■□□□ 1.01
RFC3P40938 AC092028.1-203ENST00000608262 953 ntBASIC21.39■■□□□ 1.01
RFC3P40938 H2AFB1-201ENST00000620016 587 ntAPPRIS P1 BASIC21.39■■□□□ 1.01
RFC3P40938 MSANTD2-201ENST00000239614 2495 ntTSL 2 BASIC21.39■■□□□ 1.01
RFC3P40938 GNB2-203ENST00000393926 1641 ntAPPRIS P1 TSL 5 BASIC21.39■■□□□ 1.01
RFC3P40938 SCARA5-204ENST00000524352 1945 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
RFC3P40938 MAD2L2-201ENST00000235310 1860 ntAPPRIS P1 TSL 2 BASIC21.39■■□□□ 1.01
RFC3P40938 PPP1CC-206ENST00000550991 1882 ntTSL 2 BASIC21.39■■□□□ 1.01
RFC3P40938 RMI2-201ENST00000312499 1457 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
RFC3P40938 KLC1-225ENST00000557575 2188 ntTSL 5 BASIC21.38■■□□□ 1.01
RFC3P40938 TRIM14-203ENST00000375098 1792 ntAPPRIS P1 TSL 2 BASIC21.38■■□□□ 1.01
RFC3P40938 PLEKHJ1-213ENST00000591099 1092 ntTSL 2 BASIC21.38■■□□□ 1.01
RFC3P40938 EPCAM-201ENST00000263735 1724 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
RFC3P40938 MOB4-204ENST00000409360 1447 ntTSL 5 BASIC21.38■■□□□ 1.01
RFC3P40938 BIN1-210ENST00000393041 2272 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
RFC3P40938 ARL4D-201ENST00000320033 1612 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
RFC3P40938 NRXN1-205ENST00000401710 2873 ntTSL 5 BASIC21.37■■□□□ 1.01
RFC3P40938 CDKN2B-202ENST00000380142 859 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
RFC3P40938 AQP1-202ENST00000409611 1140 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
RFC3P40938 HMCES-204ENST00000502878 1952 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
RFC3P40938 FBXL6-202ENST00000455319 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC21.37■■□□□ 1.01
RFC3P40938 MRAP2-201ENST00000257776 2153 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
Retrieved 100 of 98,524 protein–RNA pairs in 28.3 ms