Protein–RNA interactions for Protein: O60885

BRD4, Bromodomain-containing protein 4, humanhuman

Predicted RBP Predictions only

Length 1,362 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRD4O60885 SNTA1-201ENST00000217381 2342 ntAPPRIS P1 TSL 1 (best) BASIC32.73■■■□□ 2.83
BRD4O60885 RFWD2-201ENST00000308769 2124 ntTSL 1 (best) BASIC32.73■■■□□ 2.83
BRD4O60885 SPTSSA-201ENST00000298130 2777 ntAPPRIS P1 TSL 1 (best) BASIC32.72■■■□□ 2.83
BRD4O60885 PCYT2-202ENST00000538721 1765 ntAPPRIS P1 TSL 1 (best) BASIC32.72■■■□□ 2.83
BRD4O60885 CRACR2B-201ENST00000450448 1663 ntTSL 1 (best) BASIC32.72■■■□□ 2.83
BRD4O60885 FEZ1-202ENST00000366139 1053 ntTSL 2 BASIC32.71■■■□□ 2.83
BRD4O60885 MIR663AHG-233ENST00000609248 830 ntTSL 5 BASIC32.71■■■□□ 2.83
BRD4O60885 PDPK1-204ENST00000441549 1729 ntTSL 1 (best) BASIC32.71■■■□□ 2.83
BRD4O60885 PHF23-212ENST00000576955 1944 ntTSL 2 BASIC32.71■■■□□ 2.83
BRD4O60885 SH2B1-205ENST00000538342 1532 ntTSL 2 BASIC32.71■■■□□ 2.83
BRD4O60885 NEUROG3-201ENST00000242462 1376 ntAPPRIS P1 TSL 1 (best) BASIC32.71■■■□□ 2.83
BRD4O60885 TSPOAP1-AS1-205ENST00000580022 2337 ntTSL 2 BASIC32.71■■■□□ 2.83
BRD4O60885 PNCK-204ENST00000370150 1612 ntAPPRIS P1 TSL 5 BASIC32.7■■■□□ 2.83
BRD4O60885 SLC15A3-201ENST00000227880 2115 ntAPPRIS P1 TSL 1 (best) BASIC32.7■■■□□ 2.83
BRD4O60885 AC011511.4-201ENST00000586529 1850 ntAPPRIS P1 TSL 5 BASIC32.7■■■□□ 2.83
BRD4O60885 AC096887.2-201ENST00000623443 1957 ntBASIC32.7■■■□□ 2.82
BRD4O60885 PPP1R14C-201ENST00000361131 2152 ntAPPRIS P1 TSL 1 (best) BASIC32.7■■■□□ 2.82
BRD4O60885 AC009531.1-201ENST00000442323 580 ntTSL 4 BASIC32.7■■■□□ 2.82
BRD4O60885 RABL6-202ENST00000357466 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC32.69■■■□□ 2.82
BRD4O60885 VAX1-202ENST00000369206 1723 ntAPPRIS P1 TSL 5 BASIC32.69■■■□□ 2.82
BRD4O60885 TMEM185A-207ENST00000600449 2840 ntAPPRIS P1 TSL 1 (best) BASIC32.68■■■□□ 2.82
BRD4O60885 ACSS1-203ENST00000432802 2438 ntTSL 2 BASIC32.68■■■□□ 2.82
BRD4O60885 BCKDHB-202ENST00000356489 1514 ntAPPRIS P1 TSL 1 (best) BASIC32.68■■■□□ 2.82
BRD4O60885 AC090587.2-201ENST00000430222 527 ntTSL 2 BASIC32.68■■■□□ 2.82
BRD4O60885 KLHL26-202ENST00000595182 522 ntTSL 4 BASIC32.68■■■□□ 2.82
BRD4O60885 DNAH9-209ENST00000579828 1986 ntTSL 2 BASIC32.67■■■□□ 2.82
BRD4O60885 CIRBP-216ENST00000588090 1459 ntAPPRIS P3 TSL 3 BASIC32.67■■■□□ 2.82
BRD4O60885 ARMC10-205ENST00000428183 2445 ntTSL 1 (best) BASIC32.67■■■□□ 2.82
BRD4O60885 CCDC71L-201ENST00000315965 1575 ntAPPRIS ALT2 TSL 5 BASIC32.67■■■□□ 2.82
BRD4O60885 MROH6-211ENST00000534459 1789 ntAPPRIS ALT2 TSL 2 BASIC32.66■■■□□ 2.82
BRD4O60885 RAB20-201ENST00000267328 1518 ntAPPRIS P1 TSL 1 (best) BASIC32.66■■■□□ 2.82
BRD4O60885 HABP4-202ENST00000375251 2304 ntTSL 1 (best) BASIC32.66■■■□□ 2.82
BRD4O60885 ARPC4-208ENST00000498623 942 ntTSL 2 BASIC32.65■■■□□ 2.82
BRD4O60885 CLDN15-201ENST00000308344 1370 ntAPPRIS P1 TSL 1 (best) BASIC32.65■■■□□ 2.82
BRD4O60885 TMEM203-201ENST00000343666 1557 ntAPPRIS P1 BASIC32.65■■■□□ 2.82
BRD4O60885 ST6GALNAC6-204ENST00000373144 2406 ntAPPRIS ALT1 TSL 1 (best) BASIC32.65■■■□□ 2.82
BRD4O60885 PAIP1-208ENST00000514514 1603 ntTSL 5 BASIC32.65■■■□□ 2.82
BRD4O60885 TSPY9P-201ENST00000440215 945 ntBASIC32.64■■■□□ 2.82
BRD4O60885 TSPY11P-201ENST00000442607 1045 ntBASIC32.64■■■□□ 2.82
BRD4O60885 TSPAN13-201ENST00000262067 2093 ntAPPRIS P1 TSL 1 (best) BASIC32.63■■■□□ 2.81
BRD4O60885 FOXA3-201ENST00000302177 1989 ntAPPRIS P1 TSL 1 (best) BASIC32.63■■■□□ 2.81
BRD4O60885 TSPAN17-204ENST00000503045 1019 ntTSL 5 BASIC32.63■■■□□ 2.81
BRD4O60885 CDKN3-207ENST00000543789 610 ntTSL 5 BASIC32.63■■■□□ 2.81
BRD4O60885 LRMDA-215ENST00000611255 1040 ntAPPRIS ALT2 TSL 5 BASIC32.63■■■□□ 2.81
BRD4O60885 POLE2-201ENST00000216367 1776 ntAPPRIS P1 TSL 1 (best) BASIC32.62■■■□□ 2.81
BRD4O60885 TTBK2-205ENST00000567274 1777 ntTSL 5 BASIC32.62■■■□□ 2.81
BRD4O60885 GDF6-202ENST00000620978 973 ntTSL 1 (best) BASIC32.62■■■□□ 2.81
BRD4O60885 SHISA5-201ENST00000296444 2369 ntTSL 1 (best) BASIC32.62■■■□□ 2.81
BRD4O60885 SNX5-201ENST00000377759 2270 ntAPPRIS P1 TSL 1 (best) BASIC32.62■■■□□ 2.81
BRD4O60885 MADCAM1-202ENST00000346144 1309 ntAPPRIS ALT2 TSL 1 (best) BASIC32.61■■■□□ 2.81
BRD4O60885 EIF4EBP1-201ENST00000338825 1020 ntAPPRIS P1 TSL 1 (best) BASIC32.61■■■□□ 2.81
BRD4O60885 KAT8-206ENST00000543774 1846 ntAPPRIS P1 TSL 5 BASIC32.61■■■□□ 2.81
BRD4O60885 LRRC14B-201ENST00000328278 1573 ntAPPRIS P1 TSL 1 (best) BASIC32.61■■■□□ 2.81
BRD4O60885 MRPL4-207ENST00000590669 1423 ntTSL 1 (best) BASIC32.61■■■□□ 2.81
BRD4O60885 IGFBP7-203ENST00000514062 1251 ntAPPRIS ALT2 TSL 2 BASIC32.6■■■□□ 2.81
BRD4O60885 AC131281.2-201ENST00000520478 145 ntBASIC32.6■■■□□ 2.81
BRD4O60885 SYT7-202ENST00000535826 1621 ntTSL 5 BASIC32.6■■■□□ 2.81
BRD4O60885 MEIS2-204ENST00000397620 2295 ntTSL 2 BASIC32.6■■■□□ 2.81
BRD4O60885 SLC35B2-204ENST00000537814 1715 ntTSL 2 BASIC32.6■■■□□ 2.81
BRD4O60885 PABPC1L-202ENST00000217074 1263 ntTSL 5 BASIC32.59■■■□□ 2.81
BRD4O60885 HM13-AS1-201ENST00000412178 489 ntTSL 3 BASIC32.59■■■□□ 2.81
BRD4O60885 GSK3A-201ENST00000222330 2188 ntAPPRIS P2 TSL 1 (best) BASIC32.59■■■□□ 2.81
BRD4O60885 BSCL2-205ENST00000403550 1693 ntAPPRIS P3 TSL 5 BASIC32.59■■■□□ 2.81
BRD4O60885 AC020928.2-201ENST00000588717 2197 ntBASIC32.59■■■□□ 2.81
BRD4O60885 RDH14-201ENST00000381249 1587 ntAPPRIS P1 TSL 1 (best) BASIC32.59■■■□□ 2.81
BRD4O60885 NAA30-203ENST00000555166 1294 ntAPPRIS ALT2 TSL 2 BASIC32.58■■■□□ 2.81
BRD4O60885 HNRNPUL1-222ENST00000617774 451 ntTSL 5 BASIC32.58■■■□□ 2.81
BRD4O60885 TMUB1-203ENST00000462940 1549 ntAPPRIS P1 TSL 1 (best) BASIC32.58■■■□□ 2.81
BRD4O60885 TRIM54-201ENST00000296098 2027 ntTSL 1 (best) BASIC32.58■■■□□ 2.81
BRD4O60885 CLPTM1L-201ENST00000320895 2500 ntAPPRIS P1 TSL 1 (best) BASIC32.58■■■□□ 2.81
BRD4O60885 IL15RA-214ENST00000525219 1850 ntAPPRIS ALT2 TSL 1 (best) BASIC32.58■■■□□ 2.81
BRD4O60885 CHKA-202ENST00000356135 1755 ntAPPRIS ALT2 TSL 1 (best) BASIC32.58■■■□□ 2.81
BRD4O60885 C8orf58-206ENST00000614574 1955 ntAPPRIS ALT2 TSL 5 BASIC32.58■■■□□ 2.81
BRD4O60885 PLEK2-201ENST00000216446 1549 ntAPPRIS P1 TSL 1 (best) BASIC32.58■■■□□ 2.81
BRD4O60885 LRRC61-205ENST00000493307 1456 ntAPPRIS P1 TSL 5 BASIC32.57■■■□□ 2.81
BRD4O60885 ZNF428-201ENST00000300811 1412 ntAPPRIS P1 TSL 1 (best) BASIC32.57■■■□□ 2.8
BRD4O60885 MAD2L2-201ENST00000235310 1860 ntAPPRIS P1 TSL 2 BASIC32.57■■■□□ 2.8
BRD4O60885 LRRC1-201ENST00000370882 808 ntTSL 3 BASIC32.57■■■□□ 2.8
BRD4O60885 MIR638-201ENST00000385237 100 ntBASIC32.57■■■□□ 2.8
BRD4O60885 RPP21-222ENST00000433076 577 ntTSL 2 BASIC32.57■■■□□ 2.8
BRD4O60885 SERTAD4-AS1-202ENST00000475406 591 ntTSL 2 BASIC32.57■■■□□ 2.8
BRD4O60885 LINC01881-206ENST00000614114 957 ntTSL 2 BASIC32.57■■■□□ 2.8
BRD4O60885 IFNL4-201ENST00000606380 1637 ntAPPRIS P5 TSL 1 (best) BASIC32.57■■■□□ 2.8
BRD4O60885 ATPAF1-213ENST00000574428 1760 ntTSL 1 (best) BASIC32.56■■■□□ 2.8
BRD4O60885 KREMEN2-205ENST00000575769 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC32.56■■■□□ 2.8
BRD4O60885 CLTB-201ENST00000310418 1215 ntAPPRIS P4 TSL 1 (best) BASIC32.56■■■□□ 2.8
BRD4O60885 CLTB-202ENST00000345807 1161 ntAPPRIS ALT1 TSL 1 (best) BASIC32.56■■■□□ 2.8
BRD4O60885 SENP5-202ENST00000419026 973 ntTSL 3 BASIC32.56■■■□□ 2.8
BRD4O60885 AL117332.1-201ENST00000622628 974 ntBASIC32.56■■■□□ 2.8
BRD4O60885 GAK-223ENST00000628912 497 ntTSL 5 BASIC32.56■■■□□ 2.8
BRD4O60885 KLF3-AS1-202ENST00000440181 2368 ntTSL 2 BASIC32.55■■■□□ 2.8
BRD4O60885 MAST4-206ENST00000406374 1066 ntTSL 1 (best) BASIC32.55■■■□□ 2.8
BRD4O60885 MIR3621-201ENST00000580529 85 ntBASIC32.55■■■□□ 2.8
BRD4O60885 H2AFB1-201ENST00000620016 587 ntAPPRIS P1 BASIC32.55■■■□□ 2.8
BRD4O60885 GCLC-209ENST00000514004 2356 ntTSL 1 (best) BASIC32.54■■■□□ 2.8
BRD4O60885 SSSCA1-AS1-201ENST00000567594 614 ntBASIC32.54■■■□□ 2.8
BRD4O60885 MIR6724-1-201ENST00000616420 92 ntBASIC32.54■■■□□ 2.8
BRD4O60885 MIR6724-2-201ENST00000616483 92 ntBASIC32.54■■■□□ 2.8
BRD4O60885 MIR6724-4-201ENST00000617390 92 ntBASIC32.54■■■□□ 2.8
BRD4O60885 MIR6724-3-201ENST00000622482 92 ntBASIC32.54■■■□□ 2.8
Retrieved 100 of 98,524 protein–RNA pairs in 55.7 ms