Protein–RNA interactions for Protein: Q9UM47

NOTCH3, Neurogenic locus notch homolog protein 3, humanhuman

Predictions only

Length 2,321 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NOTCH3Q9UM47 FAM149A-205ENST00000502970 1990 ntAPPRIS P2 TSL 5 BASIC22.35■■□□□ 1.17
NOTCH3Q9UM47 LFNG-203ENST00000359574 1377 ntAPPRIS ALT1 TSL 1 (best) BASIC22.34■■□□□ 1.17
NOTCH3Q9UM47 MPND-207ENST00000599840 1611 ntAPPRIS ALT2 TSL 5 BASIC22.33■■□□□ 1.17
NOTCH3Q9UM47 ANKRD65-203ENST00000454272 1506 ntAPPRIS P1 TSL 5 BASIC22.32■■□□□ 1.16
NOTCH3Q9UM47 LINC01578-203ENST00000554669 578 ntTSL 5 BASIC22.32■■□□□ 1.16
NOTCH3Q9UM47 ECHS1-201ENST00000368547 1617 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
NOTCH3Q9UM47 HOXB3-211ENST00000490677 1109 ntTSL 1 (best) BASIC22.3■■□□□ 1.16
NOTCH3Q9UM47 CDK2AP1-203ENST00000535979 1281 ntTSL 3 BASIC22.29■■□□□ 1.16
NOTCH3Q9UM47 RARRES2P7-201ENST00000567349 469 ntBASIC22.29■■□□□ 1.16
NOTCH3Q9UM47 NRGN-202ENST00000412681 1106 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
NOTCH3Q9UM47 AL360182.2-201ENST00000451656 470 ntTSL 3 BASIC22.26■■□□□ 1.15
NOTCH3Q9UM47 CAPNS1-217ENST00000629983 799 ntTSL 5 BASIC22.26■■□□□ 1.15
NOTCH3Q9UM47 AL031258.1-201ENST00000623562 325 ntBASIC22.25■■□□□ 1.15
NOTCH3Q9UM47 DRD4-201ENST00000176183 1375 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
NOTCH3Q9UM47 MZT2B-202ENST00000409255 769 ntAPPRIS ALT2 TSL 5 BASIC22.24■■□□□ 1.15
NOTCH3Q9UM47 ZNF358-202ENST00000597229 1954 ntAPPRIS P1 TSL 2 BASIC22.23■■□□□ 1.15
NOTCH3Q9UM47 LINC01578-204ENST00000554894 556 ntTSL 3 BASIC22.22■■□□□ 1.15
NOTCH3Q9UM47 LINC01578-207ENST00000556895 802 ntTSL 2 BASIC22.22■■□□□ 1.15
NOTCH3Q9UM47 TNK2-201ENST00000333602 5270 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.15
NOTCH3Q9UM47 NRTN-201ENST00000303212 1109 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
NOTCH3Q9UM47 COPS6-201ENST00000303904 1432 ntAPPRIS P2 TSL 1 (best) BASIC22.19■■□□□ 1.14
NOTCH3Q9UM47 AL133346.1-201ENST00000435287 495 ntTSL 2 BASIC22.19■■□□□ 1.14
NOTCH3Q9UM47 LY6K-203ENST00000519387 963 ntAPPRIS ALT2 TSL 2 BASIC22.17■■□□□ 1.14
NOTCH3Q9UM47 NMB-201ENST00000360476 1007 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
NOTCH3Q9UM47 SH3GL1-202ENST00000417295 1404 ntTSL 2 BASIC22.15■■□□□ 1.14
NOTCH3Q9UM47 CACNG6-202ENST00000346968 645 ntTSL 5 BASIC22.13■■□□□ 1.13
NOTCH3Q9UM47 HAGHL-204ENST00000549114 1820 ntTSL 5 BASIC22.13■■□□□ 1.13
NOTCH3Q9UM47 MACROD1-201ENST00000255681 1205 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
NOTCH3Q9UM47 RNF126-201ENST00000292363 1694 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
NOTCH3Q9UM47 TXN-202ENST00000374517 869 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
NOTCH3Q9UM47 ECI1-201ENST00000301729 1541 ntAPPRIS P2 TSL 1 (best) BASIC22.09■■□□□ 1.13
NOTCH3Q9UM47 PDCD2-215ENST00000614056 1287 ntTSL 2 BASIC22.08■■□□□ 1.13
NOTCH3Q9UM47 RPS2P35-201ENST00000443417 897 ntBASIC22.08■■□□□ 1.12
NOTCH3Q9UM47 AC009133.5-201ENST00000562594 473 ntTSL 4 BASIC22.05■■□□□ 1.12
NOTCH3Q9UM47 AC097358.2-201ENST00000607541 1159 ntBASIC22.03■■□□□ 1.12
NOTCH3Q9UM47 FBXO2-201ENST00000354287 1560 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
NOTCH3Q9UM47 FEZF2-203ENST00000486811 2001 ntAPPRIS P1 TSL 5 BASIC22.02■■□□□ 1.12
NOTCH3Q9UM47 AC136428.2-201ENST00000563187 214 ntBASIC22.01■■□□□ 1.11
NOTCH3Q9UM47 EBPL-203ENST00000378270 579 ntTSL 2 BASIC22.01■■□□□ 1.11
NOTCH3Q9UM47 RAB12-201ENST00000329286 2137 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
NOTCH3Q9UM47 PARD6A-202ENST00000458121 1260 ntAPPRIS ALT1 TSL 1 (best) BASIC22■■□□□ 1.11
NOTCH3Q9UM47 SSBP4-206ENST00000599699 793 ntTSL 2 BASIC21.98■■□□□ 1.11
NOTCH3Q9UM47 ZFAND2B-204ENST00000409217 886 ntTSL 2 BASIC21.97■■□□□ 1.11
NOTCH3Q9UM47 FAM89A-201ENST00000366654 1495 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
NOTCH3Q9UM47 AC025431.1-201ENST00000559684 874 ntTSL 3 BASIC21.96■■□□□ 1.11
NOTCH3Q9UM47 MSX2-202ENST00000507785 1188 ntTSL 2 BASIC21.94■■□□□ 1.1
NOTCH3Q9UM47 SUZ12P1-203ENST00000578195 985 ntBASIC21.93■■□□□ 1.1
NOTCH3Q9UM47 KLF16-203ENST00000592313 508 ntTSL 3 BASIC21.93■■□□□ 1.1
NOTCH3Q9UM47 SETD8P1-201ENST00000623146 1180 ntBASIC21.93■■□□□ 1.1
NOTCH3Q9UM47 TRIP10-202ENST00000313285 2035 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
NOTCH3Q9UM47 C11orf84-201ENST00000294244 2024 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
NOTCH3Q9UM47 AC068152.1-207ENST00000573341 647 ntTSL 2 BASIC21.89■■□□□ 1.1
NOTCH3Q9UM47 NADK2-210ENST00000514504 1233 ntTSL 5 BASIC21.89■■□□□ 1.09
NOTCH3Q9UM47 AC092755.2-201ENST00000560199 402 ntTSL 3 BASIC21.88■■□□□ 1.09
NOTCH3Q9UM47 HOPX-206ENST00000503639 1248 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
NOTCH3Q9UM47 FAM19A5-203ENST00000402357 1508 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
NOTCH3Q9UM47 Z97634.1-201ENST00000412293 1715 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
NOTCH3Q9UM47 CD151-202ENST00000397420 1648 ntAPPRIS P2 TSL 1 (best) BASIC21.83■■□□□ 1.08
NOTCH3Q9UM47 CMC4-202ENST00000369484 1107 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.08
NOTCH3Q9UM47 LMO1-202ENST00000428101 1038 ntAPPRIS ALT1 TSL 1 (best) BASIC21.83■■□□□ 1.08
NOTCH3Q9UM47 AC068152.1-210ENST00000574741 836 ntTSL 3 BASIC21.83■■□□□ 1.08
NOTCH3Q9UM47 NT5M-201ENST00000389022 1617 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
NOTCH3Q9UM47 LY6K-202ENST00000518841 855 ntAPPRIS ALT2 TSL 2 BASIC21.81■■□□□ 1.08
NOTCH3Q9UM47 LRRC75B-201ENST00000318753 1238 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
NOTCH3Q9UM47 S100A10-202ENST00000368811 1202 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.07
NOTCH3Q9UM47 AC006486.1-201ENST00000594664 634 ntAPPRIS P1 TSL 3 BASIC21.75■■□□□ 1.07
NOTCH3Q9UM47 RAB43-207ENST00000476465 1627 ntTSL 3 BASIC21.74■■□□□ 1.07
NOTCH3Q9UM47 CGGBP1-206ENST00000482016 1147 ntAPPRIS P1 TSL 2 BASIC21.74■■□□□ 1.07
NOTCH3Q9UM47 ILK-212ENST00000532063 1617 ntTSL 2 BASIC21.74■■□□□ 1.07
NOTCH3Q9UM47 HAPLN2-201ENST00000255039 1771 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
NOTCH3Q9UM47 PCYT2-205ENST00000570391 1857 ntTSL 2 BASIC21.69■■□□□ 1.06
NOTCH3Q9UM47 HNRNPAB-207ENST00000514633 1571 ntAPPRIS ALT2 TSL 5 BASIC21.68■■□□□ 1.06
NOTCH3Q9UM47 ATPAF1-201ENST00000329231 1241 ntTSL 2 BASIC21.68■■□□□ 1.06
NOTCH3Q9UM47 AC145285.7-201ENST00000614819 1539 ntBASIC21.67■■□□□ 1.06
NOTCH3Q9UM47 B4GALT2-203ENST00000372324 2203 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
NOTCH3Q9UM47 PPP1CC-202ENST00000340766 1472 ntTSL 2 BASIC21.64■■□□□ 1.06
NOTCH3Q9UM47 FGF3-201ENST00000334134 892 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
NOTCH3Q9UM47 AC079305.1-201ENST00000428541 499 ntTSL 3 BASIC21.63■■□□□ 1.05
NOTCH3Q9UM47 FTCDNL1-201ENST00000416668 944 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
NOTCH3Q9UM47 ARRDC1-201ENST00000371421 1586 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
NOTCH3Q9UM47 AC004080.1-201ENST00000523608 757 ntTSL 2 BASIC21.61■■□□□ 1.05
NOTCH3Q9UM47 IL13RA1-201ENST00000371642 1096 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
NOTCH3Q9UM47 AL391121.1-201ENST00000607967 1349 ntBASIC21.56■■□□□ 1.04
NOTCH3Q9UM47 TP53I13-201ENST00000301057 1530 ntAPPRIS P2 TSL 1 (best) BASIC21.55■■□□□ 1.04
NOTCH3Q9UM47 BRF1-213ENST00000548421 1452 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
NOTCH3Q9UM47 NRG1-221ENST00000614767 762 ntTSL 5 BASIC21.55■■□□□ 1.04
NOTCH3Q9UM47 GSC2-201ENST00000086933 1033 ntAPPRIS P1 TSL 5 BASIC21.54■■□□□ 1.04
NOTCH3Q9UM47 LYNX1-208ENST00000615007 1293 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
NOTCH3Q9UM47 FOXD1-202ENST00000615637 2272 ntAPPRIS P1 BASIC21.53■■□□□ 1.04
NOTCH3Q9UM47 PCBD2-201ENST00000254908 1223 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
NOTCH3Q9UM47 HNRNPLP2-201ENST00000568980 1570 ntBASIC21.51■■□□□ 1.03
NOTCH3Q9UM47 AL162393.1-201ENST00000437852 946 ntBASIC21.51■■□□□ 1.03
NOTCH3Q9UM47 PPP2CB-201ENST00000221138 2006 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
NOTCH3Q9UM47 AP006261.1-201ENST00000584783 668 ntBASIC21.5■■□□□ 1.03
NOTCH3Q9UM47 RASSF7-201ENST00000397582 1731 ntAPPRIS ALT2 TSL 2 BASIC21.49■■□□□ 1.03
NOTCH3Q9UM47 BHLHE23-201ENST00000370346 1057 ntAPPRIS P1 BASIC21.49■■□□□ 1.03
NOTCH3Q9UM47 CAHM-201ENST00000604200 896 ntBASIC21.49■■□□□ 1.03
NOTCH3Q9UM47 LMO2-202ENST00000395833 1687 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
NOTCH3Q9UM47 MVK-208ENST00000539696 608 ntTSL 5 BASIC21.47■■□□□ 1.03
NOTCH3Q9UM47 KHSRP-213ENST00000619396 2226 ntAPPRIS ALT2 TSL 5 BASIC21.47■■□□□ 1.03
Retrieved 100 of 98,524 protein–RNA pairs in 53.4 ms